pycom03g19210

Alpha-1,3 1,6-mannosyltransferase

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr3
Physical Location & Seq
Forward (+)
19885599 .. 19886152
554 bp
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UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 354 bp
ATGTCCGATGTTTTAGGTGGCTTTGATAATCGTTTGAGAGAAAATGTTGAGTACTTAGAGGATGAGCACTTTGGCATTGTACCTCTGGAGGCAATGGCTGCTCATAAACCTGTCATTGCGTGCAACAGTGGGGGCCCTGTAGAGACAATGAAGAATGGTGAGACGGGATTTCTGTGTGATTGTAACCCAAGAGAGTTCTCTTTGGCTAAGGCTAAACTCATAACAGACCCGCAGATGGCTCAGAGAAGGGGCATAGAAGCACGACGGCATGTCACAGGGTCATTCTCTACGAAAATATTTGGTCAGCACTTGAATCAATACATTGTTGATGTTGCTCGGACCAAAAGAGACTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
Pfam Domains
Protein Families

Protein Analysis

118

Amino Acids

13.06

Weight (kDa)

6.41

Isoelectric Point (pI)

38.68

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Glycos_transf_1 PF00534 21 - 89 3.2e-17 Glycosyl transferases group 1
Glyco_trans_1_4 PF13692 21 - 76 1e-10 Glycosyl transferases group 1
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Orthologous Genes (Group: OG0029245)

Species Orthologous Gene IDs
pyrus_communis pycom03g19170 pycom03g19210

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 230
AfaI GTAC 2 cut(s) 53, 81
AfiI CCNNNNNNNGG 1 cut(s) 235
AgsI TTSAA 1 cut(s) 313
AhdI GACNNNNNGTC 1 cut(s) 269
Alw21I GWGCWC 1 cut(s) 69
Alw26I GTCTC 3 cut(s) 137, 155, 342
AoxI GGCC 1 cut(s) 133
ApaI GGGCCC 1 cut(s) 137
ApeKI GCWGC 1 cut(s) 98
AspS9I GGNCC 3 cut(s) 133, 134, 339
AsuHPI GGTGA 1 cut(s) 170
AvaII GGWCC 1 cut(s) 339
BaeGI GKGCMC 1 cut(s) 137
BanII GRGCYC 1 cut(s) 137
Bbv12I GWGCWC 1 cut(s) 69
BbvI GCAGC 1 cut(s) 85
BccI CCATC 1 cut(s) 229
BceAI ACGGC 1 cut(s) 281
BcoDI GTCTC 3 cut(s) 137, 155, 342
BfmI CTRYAG 1 cut(s) 138
BisI GCNGC 1 cut(s) 99
BlsI GCNGC 1 cut(s) 100
BmcAI AGTACT 1 cut(s) 53
Bme18I GGWCC 1 cut(s) 339
BmeRI GACNNNNNGTC 1 cut(s) 269
BmgT120I GGNCC 3 cut(s) 133, 134, 339
BmiI GGNNCC 2 cut(s) 134, 135
BpmI CTGGAG 1 cut(s) 107
Bpu10I CCTNAGC 1 cut(s) 207
Bsc4I CCNNNNNNNGG 1 cut(s) 235
Bse3DI GCAATG 2 cut(s) 99, 114
BseGI GGATG 1 cut(s) 67
BseLI CCNNNNNNNGG 1 cut(s) 235
BseMI GCAATG 2 cut(s) 99, 114
BseMII CTCAG 1 cut(s) 254
BseSI GKGCMC 1 cut(s) 137
BseXI GCAGC 1 cut(s) 85
BshFI GGCC 1 cut(s) 135
BsiHKAI GWGCWC 1 cut(s) 69
BslI CCNNNNNNNGG 1 cut(s) 235
BsmAI GTCTC 3 cut(s) 137, 155, 342
BsmBI CGTCTC 1 cut(s) 155
BsnI GGCC 1 cut(s) 135
Bsp120I GGGCCC 1 cut(s) 133
Bsp1286I GDGCHC 2 cut(s) 69, 137
BspACI CCGC 1 cut(s) 230
BspANI GGCC 1 cut(s) 135
BspCNI CTCAG 1 cut(s) 253
BspLI GGNNCC 2 cut(s) 134, 135
BsrDI GCAATG 2 cut(s) 99, 114
Bst4CI ACNGT 1 cut(s) 128
BstAPI GCANNNNNTGC 1 cut(s) 98
BstC8I GCNNGC 1 cut(s) 121
BstDEI CTNAG 3 cut(s) 55, 207, 240
BstF5I GGATG 1 cut(s) 67
BstMAI GTCTC 3 cut(s) 137, 155, 342
BstMWI GCNNNNNNNGC 1 cut(s) 98
BstNSI RCATGY 1 cut(s) 272
BstSFI CTRYAG 1 cut(s) 138
BstSLI GKGCMC 1 cut(s) 137
BstV1I GCAGC 1 cut(s) 85
BsuRI GGCC 1 cut(s) 135
BtsCI GGATG 1 cut(s) 67
BtsIMutI CAGTG 1 cut(s) 133
Cac8I GCNNGC 1 cut(s) 121
Cfr13I GGNCC 3 cut(s) 133, 134, 339
Csp6I GTAC 2 cut(s) 52, 80
CviAII CATG 1 cut(s) 269
CviJI RGCY 6 cut(s) 21, 98, 135, 206, 212, 239
CviKI_1 RGCY 6 cut(s) 21, 98, 135, 206, 212, 239
CviQI GTAC 2 cut(s) 52, 80
DdeI CTNAG 3 cut(s) 55, 207, 240
DriI GACNNNNNGTC 1 cut(s) 269
Eam1105I GACNNNNNGTC 1 cut(s) 269
Eco24I GRGCYC 1 cut(s) 137
Eco47I GGWCC 1 cut(s) 339
EcoO109I RGGNCCY 2 cut(s) 133, 134
EcoT38I GRGCYC 1 cut(s) 137
Esp3I CGTCTC 1 cut(s) 155
FaeI CATG 1 cut(s) 272
FaiI YATR 4 cut(s) 105, 221, 254, 270
FatI CATG 1 cut(s) 268
FauI CCCGC 1 cut(s) 237
Fnu4HI GCNGC 1 cut(s) 99
FokI GGATG 1 cut(s) 74
FriOI GRGCYC 1 cut(s) 137
Fsp4HI GCNGC 1 cut(s) 99
GluI GCNGC 1 cut(s) 99
GsuI CTGGAG 1 cut(s) 107
HaeIII GGCC 1 cut(s) 135
Hin1II CATG 1 cut(s) 272
HinfI GANTC 1 cut(s) 313
HphI GGTGA 1 cut(s) 170
Hpy188I TCNGA 3 cut(s) 7, 243, 339
Hpy188III TCNNGA 1 cut(s) 86
Hpy99I CGWCG 1 cut(s) 267
HpyAV CCTTC 1 cut(s) 240
HpyCH4III ACNGT 1 cut(s) 128
HpyCH4V TGCA 1 cut(s) 123
HpyF10VI GCNNNNNNNGC 1 cut(s) 98
HpyF3I CTNAG 3 cut(s) 55, 207, 240
Hsp92II CATG 1 cut(s) 272
LpnPI CCDG 4 cut(s) 71, 123, 150, 261
Lsp1109I GCAGC 1 cut(s) 85
MaeIII GTNAC 2 cut(s) 182, 271
MboII GAAGA 1 cut(s) 163
MhlI GDGCHC 2 cut(s) 69, 137
MnlI CCTC 3 cut(s) 52, 82, 93
MwoI GCNNNNNNNGC 1 cut(s) 98
NlaIII CATG 1 cut(s) 272
NlaIV GGNNCC 2 cut(s) 134, 135
NmuCI GTSAC 1 cut(s) 271
NspI RCATGY 1 cut(s) 272
PfeI GAWTC 1 cut(s) 313
PkrI GCNGC 1 cut(s) 100
PspN4I GGNNCC 2 cut(s) 134, 135
PspOMI GGGCCC 1 cut(s) 133
PspPI GGNCC 3 cut(s) 133, 134, 339
RsaI GTAC 2 cut(s) 53, 81
RsaNI GTAC 2 cut(s) 52, 80
SatI GCNGC 1 cut(s) 99
Sau96I GGNCC 3 cut(s) 133, 134, 339
ScaI AGTACT 1 cut(s) 53
SduI GDGCHC 2 cut(s) 69, 137
SetI ASST 3 cut(s) 19, 85, 112
SfcI CTRYAG 1 cut(s) 138
SinI GGWCC 1 cut(s) 339
SsiI CCGC 1 cut(s) 230
SspI AATATT 1 cut(s) 297
TaaI ACNGT 1 cut(s) 128
TatI WGTACW 1 cut(s) 51
TfiI GAWTC 1 cut(s) 313
TscAI CASTG 1 cut(s) 133
TseFI GTSAC 1 cut(s) 271
TseI GCWGC 1 cut(s) 98
Tsp45I GTSAC 1 cut(s) 271
TspDTI ATGAA 1 cut(s) 164
TspRI CASTG 1 cut(s) 133
VpaK11BI GGWCC 1 cut(s) 339
XceI RCATGY 1 cut(s) 272
ZrmI AGTACT 1 cut(s) 53
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.