Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr3

Orthogroup ID

OG0028495

Physical Location & Seq

Genomic Coordinates Forward (+)

22256624 .. 22258382

Gene Structure 1759 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 456 bp

ATGGTGGCACACAAGAGACGGCTGGACTTGAAAGTGGAGACCATGAAGCGTGAAATGAGGGCTGAAATTATGTTCGTGTTGAAGAATGCTGATGGAGACATGATAGAACCAAATGGAGTTGATTTGGAAGGTTTTGTTGTGGTGCAGAATATTGGCATGGATAATGAGATTGGGTATAATCCATGCATGATGAATGTTACTGGCATCAGGTTAGTGATGGCACCTGGCGGCAGCGGAGAAGGCGGTGGTGGAGGAGGGGGTGGAGGCGGTGGAGGCAGTGGAGGTGGTGGTGGTGGAGGTGGAGGTGGTGGTGGTGGTGCAGGTGGCGGTGGGGGAGGAGGGCCTGTAGGCAGAGGAGGAGGACCTGGAGGAGGCGGAAGAGCACATGTCAATGTCGCAGGAGAATCTAGCAGCGGTGCAGGAGTTGACAGTAGTGCTACTTGGAGTTCTTGGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko00053 ko00520 ko01100 ko01110 map00053 map00520 map01100 map01110

Pfam Domains

Protein Families

Epimerase GDP_Man_Dehyd Nucleotid_trans

Protein Analysis

152

Amino Acids

14.26

Weight (kDa)

5.29

Isoelectric Point (pI)

56.81

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0028495)

Species	Orthologous Gene IDs
malus_domestica	MD03G1276900.v1.1
pyrus_communis	pycom03g22060

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	311
Acc36I	ACCTGC	1 cut(s)	311
AccB1I	GGYRCC	1 cut(s)	220
AciI	CCGC	7 cut(s)	228, 234, 243, 267, 327, 375, 414
AfiI	CCNNNNNNNGG	1 cut(s)	371
AflIII	ACRYGT	1 cut(s)	385
AgsI	TTSAA	2 cut(s)	31, 82
AjnI	CCWGG	2 cut(s)	223, 364
Alw21I	GWGCWC	1 cut(s)	385
Alw26I	GTCTC	3 cut(s)	10, 32, 90
AoxI	GGCC	1 cut(s)	341
ApeKI	GCWGC	2 cut(s)	231, 411
AspS9I	GGNCC	2 cut(s)	341, 362
AvaII	GGWCC	1 cut(s)	362
BanI	GGYRCC	1 cut(s)	220
Bbv12I	GWGCWC	1 cut(s)	385
BbvI	GCAGC	2 cut(s)	243, 423
BccI	CCATC	2 cut(s)	86, 211
BceAI	ACGGC	1 cut(s)	35
BciT130I	CCWGG	2 cut(s)	225, 366
BcoDI	GTCTC	3 cut(s)	10, 32, 90
BfaI	CTAG	1 cut(s)	408
BfmI	CTRYAG	1 cut(s)	345
BfuAI	ACCTGC	1 cut(s)	311
BisI	GCNGC	3 cut(s)	229, 232, 412
BlsI	GCNGC	3 cut(s)	230, 233, 413
Bme1390I	CCNGG	2 cut(s)	225, 366
Bme18I	GGWCC	1 cut(s)	362
BmgT120I	GGNCC	2 cut(s)	341, 362
BmiI	GGNNCC	1 cut(s)	222
BmrFI	CCNGG	2 cut(s)	225, 366
BmsI	GCATC	1 cut(s)	213
BpmI	CTGGAG	1 cut(s)	387
BsaI	GGTCTC	1 cut(s)	32
BsaXI	ACNNNNNCTCC	2 cut(s)	330, 360
Bsc4I	CCNNNNNNNGG	1 cut(s)	371
Bse1I	ACTGG	1 cut(s)	205
BseBI	CCWGG	2 cut(s)	225, 366
BseLI	CCNNNNNNNGG	1 cut(s)	371
BseNI	ACTGG	1 cut(s)	205
BseRI	GAGGAG	5 cut(s)	267, 351, 369, 372, 384
BseXI	GCAGC	2 cut(s)	243, 423
BsgI	GTGCAG	3 cut(s)	164, 339, 438
BshFI	GGCC	1 cut(s)	343
BshNI	GGYRCC	1 cut(s)	220
BsiHKAI	GWGCWC	1 cut(s)	385
BslI	CCNNNNNNNGG	1 cut(s)	371
BsmAI	GTCTC	3 cut(s)	10, 32, 90
BsmBI	CGTCTC	1 cut(s)	10
BsmI	GAATGC	1 cut(s)	91
BsnI	GGCC	1 cut(s)	343
Bso31I	GGTCTC	1 cut(s)	32
Bsp1286I	GDGCHC	1 cut(s)	385
BspACI	CCGC	7 cut(s)	228, 234, 243, 267, 327, 375, 414
BspANI	GGCC	1 cut(s)	343
BspLI	GGNNCC	1 cut(s)	222
BspMI	ACCTGC	1 cut(s)	311
BspQI	GCTCTTC	1 cut(s)	373
BspT107I	GGYRCC	1 cut(s)	220
BspTNI	GGTCTC	1 cut(s)	32
BsrI	ACTGG	1 cut(s)	205
Bst2UI	CCWGG	2 cut(s)	225, 366
Bst4CI	ACNGT	1 cut(s)	431
Bst6I	CTCTTC	1 cut(s)	373
BstENI	CCTNNNNNAGG	1 cut(s)	369
BstMAI	GTCTC	3 cut(s)	10, 32, 90
BstMWI	GCNNNNNNNGC	2 cut(s)	240, 273
BstNI	CCWGG	2 cut(s)	225, 366
BstNSI	RCATGY	1 cut(s)	389
BstSCI	CCNGG	2 cut(s)	223, 364
BstSFI	CTRYAG	1 cut(s)	345
BstV1I	GCAGC	2 cut(s)	243, 423
BsuRI	GGCC	1 cut(s)	343
BtsI	GCAGTG	1 cut(s)	283
BtsIMutI	CAGTG	1 cut(s)	283
BveI	ACCTGC	1 cut(s)	311
Cfr13I	GGNCC	2 cut(s)	341, 362
CviAII	CATG	6 cut(s)	43, 100, 157, 183, 187, 386
CviJI	RGCY	3 cut(s)	22, 62, 343
CviKI_1	RGCY	3 cut(s)	22, 62, 343
Eam1104I	CTCTTC	1 cut(s)	373
EarI	CTCTTC	1 cut(s)	373
EciI	GGCGGA	1 cut(s)	390
Eco31I	GGTCTC	1 cut(s)	32
Eco47I	GGWCC	1 cut(s)	362
EcoNI	CCTNNNNNAGG	1 cut(s)	369
EcoO109I	RGGNCCY	2 cut(s)	341, 362
EcoRII	CCWGG	2 cut(s)	223, 364
EcoT22I	ATGCAT	1 cut(s)	188
Esp3I	CGTCTC	1 cut(s)	10
FaeI	CATG	6 cut(s)	46, 103, 160, 186, 190, 389
FaiI	YATR	8 cut(s)	44, 71, 101, 158, 177, 184, 188, 387
FatI	CATG	6 cut(s)	42, 99, 156, 182, 186, 385
Fnu4HI	GCNGC	3 cut(s)	229, 232, 412
Fsp4HI	GCNGC	3 cut(s)	229, 232, 412
FspBI	CTAG	1 cut(s)	408
GluI	GCNGC	3 cut(s)	229, 232, 412
GsuI	CTGGAG	1 cut(s)	387
HaeIII	GGCC	1 cut(s)	343
Hin1II	CATG	6 cut(s)	46, 103, 160, 186, 190, 389
HincII	GTYRAC	1 cut(s)	427
HindII	GTYRAC	1 cut(s)	427
HinfI	GANTC	1 cut(s)	404
Hpy166II	GTNNAC	1 cut(s)	427
Hpy8I	GTNNAC	1 cut(s)	427
HpyAV	CCTTC	2 cut(s)	122, 233
HpyCH4III	ACNGT	1 cut(s)	431
HpyCH4V	TGCA	4 cut(s)	145, 186, 320, 419
HpyF10VI	GCNNNNNNNGC	2 cut(s)	240, 273
Hsp92II	CATG	6 cut(s)	46, 103, 160, 186, 190, 389
LguI	GCTCTTC	1 cut(s)	373
Lsp1109I	GCAGC	2 cut(s)	243, 423
LweI	GCATC	1 cut(s)	213
MaeI	CTAG	1 cut(s)	408
MaeIII	GTNAC	1 cut(s)	196
MboII	GAAGA	2 cut(s)	94, 390
MhlI	GDGCHC	1 cut(s)	385
MluCI	AATT	1 cut(s)	66
Mph1103I	ATGCAT	1 cut(s)	188
MslI	CAYNNNNRTG	1 cut(s)	390
MspA1I	CMGCKG	2 cut(s)	234, 414
MspR9I	CCNGG	2 cut(s)	225, 366
Mva1269I	GAATGC	1 cut(s)	91
MvaI	CCWGG	2 cut(s)	225, 366
MwoI	GCNNNNNNNGC	2 cut(s)	240, 273
NlaIII	CATG	6 cut(s)	46, 103, 160, 186, 190, 389
NlaIV	GGNNCC	1 cut(s)	222
NsiI	ATGCAT	1 cut(s)	188
NspI	RCATGY	1 cut(s)	389
PaqCI	CACCTGC	1 cut(s)	311
PciI	ACATGT	1 cut(s)	385
PciSI	GCTCTTC	1 cut(s)	373
PctI	GAATGC	1 cut(s)	91
PfeI	GAWTC	1 cut(s)	404
PkrI	GCNGC	3 cut(s)	230, 233, 413
PpuMI	RGGWCCY	1 cut(s)	362
PscI	ACATGT	1 cut(s)	385
Psp5II	RGGWCCY	1 cut(s)	362
Psp6I	CCWGG	2 cut(s)	223, 364
PspGI	CCWGG	2 cut(s)	223, 364
PspN4I	GGNNCC	1 cut(s)	222
PspPI	GGNCC	2 cut(s)	341, 362
PspPPI	RGGWCCY	1 cut(s)	362
RseI	CAYNNNNRTG	1 cut(s)	390
SapI	GCTCTTC	1 cut(s)	373
SatI	GCNGC	3 cut(s)	229, 232, 412
Sau96I	GGNCC	2 cut(s)	341, 362
ScrFI	CCNGG	2 cut(s)	225, 366
SduI	GDGCHC	1 cut(s)	385
SetI	ASST	8 cut(s)	133, 212, 226, 286, 301, 307, 325, 367
SfaNI	GCATC	1 cut(s)	213
SfcI	CTRYAG	1 cut(s)	345
SinI	GGWCC	1 cut(s)	362
SmiMI	CAYNNNNRTG	1 cut(s)	390
Sse9I	AATT	1 cut(s)	66
SsiI	CCGC	7 cut(s)	228, 234, 243, 267, 327, 375, 414
SspI	AATATT	1 cut(s)	151
SspMI	CTAG	1 cut(s)	408
StyD4I	CCNGG	2 cut(s)	223, 364
TaaI	ACNGT	1 cut(s)	431
TasI	AATT	1 cut(s)	66
TauI	GCSGC	1 cut(s)	231
TfiI	GAWTC	1 cut(s)	404
TscAI	CASTG	1 cut(s)	283
TseI	GCWGC	2 cut(s)	231, 411
TspDTI	ATGAA	2 cut(s)	59, 206
TspRI	CASTG	1 cut(s)	283
VpaK11BI	GGWCC	1 cut(s)	362
XagI	CCTNNNNNAGG	1 cut(s)	369
XceI	RCATGY	1 cut(s)	389
XspI	CTAG	1 cut(s)	408
Zsp2I	ATGCAT	1 cut(s)	188

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.