Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr4

Orthogroup ID

OG0019808

Physical Location & Seq

Genomic Coordinates Forward (+)

630479 .. 631281

Gene Structure 803 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 429 bp

ATGCTGAAGCCCAACAACGGCTTCTGGGCACCATTCGATCACAATACTCTGCTCCGCACTTGCTCGCTCCTTCATGGATCTCCATCTTCTTCTGCACCACCGCCATGTGGTGGCACTAGCATTTACATGGGTGCCAACAAGGATGACTGGATCATCACACTCGCCCAGTTTGCAGTAGACCAGCACAATCAAAAAGAGAGTAAGCATCTTCGATATGTGAGGGTGGTGGGGGCAAGCCACACTACGGTTTCTAGCATATTGTACCATATTACACTGGAGGCAGTTGATGCTAATAGGCCTAAGATTTACCATGCAGTTGTTTGGTTGCAGATATTAAAGAACTTCATGGAGTTGCTTGTGTGGAACCCTGTTAACGATCGCTTGTTGGTTCATGGTGTTAAATGTGGTGAGTACATTCAAGTCCAGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0002020 GO:0003674 GO:0004857 GO:0004866 GO:0004869 GO:0005488 GO:0005515 GO:0008150 GO:0009892 GO:0010466 GO:0010605 GO:0010951 GO:0019222 GO:0019899 GO:0030162 GO:0030234 GO:0030414 GO:0031323 GO:0031324 GO:0032268 GO:0032269 GO:0043086 GO:0044092 GO:0045861 GO:0048519 GO:0048523 GO:0050789 GO:0050790 GO:0050794 GO:0051171 GO:0051172 GO:0051246 GO:0051248 GO:0051336 GO:0051346 GO:0052547 GO:0052548 GO:0060255 GO:0061134 GO:0061135 GO:0065007 GO:0065009 GO:0080090 GO:0098772 GO:2000116 GO:2000117

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Cystatin SQAPI

Protein Analysis

143

Amino Acids

15.99

Weight (kDa)

8.48

Isoelectric Point (pI)

36.71

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
SQAPI	PF16845	47 - 122	3.6e-11	Aspartic acid proteinase inhibitor
Cystatin	PF00031	48 - 107	2.4e-06	Cystatin domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0019808)

Species	Orthologous Gene IDs
prunus_persica	Prupe.1G008200_v2.0.a1 Prupe.1G008200_v2.0.a1 Prupe.1G008200_v2.0.a1 Prupe.1G008200_v2.0.a1 Prupe.1G008200_v2.0.a1 Prupe.1G008200_v2.0.a1
pyrus_communis	pycom04g00680

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	2 cut(s)	28, 131
AccB7I	CCANNNNNTGG	1 cut(s)	110
AccI	GTMKAC	1 cut(s)	177
AciI	CCGC	2 cut(s)	55, 101
AclWI	GGATC	2 cut(s)	85, 158
AcuI	CTGAAG	1 cut(s)	26
AfaI	GTAC	2 cut(s)	263, 413
AfiI	CCNNNNNNNGG	4 cut(s)	17, 107, 110, 244
AgsI	TTSAA	1 cut(s)	419
AjuI	GAANNNNNNNTTGG	1 cut(s)	37
AlwI	GGATC	2 cut(s)	85, 158
AoxI	GGCC	1 cut(s)	296
AsuHPI	GGTGA	1 cut(s)	419
BaeGI	GKGCMC	1 cut(s)	31
BanI	GGYRCC	2 cut(s)	28, 131
BccI	CCATC	1 cut(s)	91
BceAI	ACGGC	1 cut(s)	34
BfaI	CTAG	2 cut(s)	117, 252
BmiI	GGNNCC	3 cut(s)	30, 133, 365
BmrI	ACTGGG	1 cut(s)	160
BmsI	GCATC	2 cut(s)	214, 277
BmuI	ACTGGG	1 cut(s)	160
BpmI	CTGGAG	1 cut(s)	296
BsaBI	GATNNNNATC	1 cut(s)	82
Bsc4I	CCNNNNNNNGG	4 cut(s)	17, 107, 110, 244
Bse1I	ACTGG	4 cut(s)	152, 166, 279, 424
Bse8I	GATNNNNATC	1 cut(s)	82
BseGI	GGATG	1 cut(s)	148
BseJI	GATNNNNATC	1 cut(s)	82
BseLI	CCNNNNNNNGG	4 cut(s)	17, 107, 110, 244
BseNI	ACTGG	4 cut(s)	152, 166, 279, 424
BseSI	GKGCMC	1 cut(s)	31
BsgI	GTGCAG	1 cut(s)	78
Bsh1285I	CGRYCG	1 cut(s)	379
BshFI	GGCC	1 cut(s)	298
BshNI	GGYRCC	2 cut(s)	28, 131
BsiEI	CGRYCG	1 cut(s)	379
BslI	CCNNNNNNNGG	4 cut(s)	17, 107, 110, 244
BsnI	GGCC	1 cut(s)	298
Bsp1286I	GDGCHC	1 cut(s)	31
Bsp143I	GATC	4 cut(s)	37, 77, 150, 376
BspACI	CCGC	2 cut(s)	55, 101
BspANI	GGCC	1 cut(s)	298
BspLI	GGNNCC	3 cut(s)	30, 133, 365
BspPI	GGATC	2 cut(s)	85, 158
BspT107I	GGYRCC	2 cut(s)	28, 131
BsrI	ACTGG	4 cut(s)	152, 166, 279, 424
BssMI	GATC	4 cut(s)	37, 77, 150, 376
Bst4CI	ACNGT	1 cut(s)	247
BstAPI	GCANNNNNTGC	1 cut(s)	287
BstC8I	GCNNGC	2 cut(s)	65, 235
BstDEI	CTNAG	1 cut(s)	300
BstF5I	GGATG	1 cut(s)	148
BstKTI	GATC	4 cut(s)	40, 80, 153, 379
BstMBI	GATC	4 cut(s)	37, 77, 150, 376
BstMCI	CGRYCG	1 cut(s)	379
BstMWI	GCNNNNNNNGC	2 cut(s)	170, 287
BstSLI	GKGCMC	1 cut(s)	31
BstX2I	RGATCY	1 cut(s)	77
BstYI	RGATCY	1 cut(s)	77
BsuRI	GGCC	1 cut(s)	298
BtsCI	GGATG	1 cut(s)	148
BtsIMutI	CAGTG	1 cut(s)	272
Cac8I	GCNNGC	2 cut(s)	65, 235
Csp6I	GTAC	2 cut(s)	262, 412
CviAII	CATG	6 cut(s)	74, 105, 127, 311, 346, 392
CviJI	RGCY	4 cut(s)	10, 21, 237, 298
CviKI_1	RGCY	4 cut(s)	10, 21, 237, 298
CviQI	GTAC	2 cut(s)	262, 412
DdeI	CTNAG	1 cut(s)	300
DpnI	GATC	4 cut(s)	39, 79, 152, 378
DpnII	GATC	4 cut(s)	37, 77, 150, 376
Eco147I	AGGCCT	1 cut(s)	298
Eco57I	CTGAAG	1 cut(s)	26
FaeI	CATG	6 cut(s)	77, 108, 130, 314, 349, 395
FaiI	YATR	9 cut(s)	75, 106, 128, 216, 257, 267, 312, 347, 393
FatI	CATG	6 cut(s)	73, 104, 126, 310, 345, 391
FblI	GTMKAC	1 cut(s)	177
FokI	GGATG	1 cut(s)	155
FspBI	CTAG	2 cut(s)	117, 252
GsuI	CTGGAG	1 cut(s)	296
HaeIII	GGCC	1 cut(s)	298
Hin1II	CATG	6 cut(s)	77, 108, 130, 314, 349, 395
HincII	GTYRAC	1 cut(s)	373
HindII	GTYRAC	1 cut(s)	373
HpaI	GTTAAC	1 cut(s)	373
HphI	GGTGA	1 cut(s)	419
Hpy166II	GTNNAC	2 cut(s)	178, 373
Hpy8I	GTNNAC	2 cut(s)	178, 373
HpyAV	CCTTC	1 cut(s)	80
HpyCH4III	ACNGT	1 cut(s)	247
HpyCH4V	TGCA	4 cut(s)	95, 173, 314, 328
HpyF10VI	GCNNNNNNNGC	2 cut(s)	170, 287
HpyF3I	CTNAG	1 cut(s)	300
Hsp92II	CATG	6 cut(s)	77, 108, 130, 314, 349, 395
KspAI	GTTAAC	1 cut(s)	373
Kzo9I	GATC	4 cut(s)	37, 77, 150, 376
LmnI	GCTCC	2 cut(s)	57, 72
LpnPI	CCDG	6 cut(s)	10, 133, 179, 194, 260, 381
LweI	GCATC	2 cut(s)	214, 277
MaeI	CTAG	2 cut(s)	117, 252
MalI	GATC	4 cut(s)	39, 79, 152, 378
MboI	GATC	4 cut(s)	37, 77, 150, 376
MboII	GAAGA	3 cut(s)	78, 81, 200
MflI	RGATCY	1 cut(s)	77
MhlI	GDGCHC	1 cut(s)	31
MnlI	CCTC	2 cut(s)	213, 271
MseI	TTAA	3 cut(s)	335, 372, 399
MslI	CAYNNNNRTG	2 cut(s)	103, 125
MwoI	GCNNNNNNNGC	2 cut(s)	170, 287
NdeII	GATC	4 cut(s)	37, 77, 150, 376
NlaIII	CATG	6 cut(s)	77, 108, 130, 314, 349, 395
NlaIV	GGNNCC	3 cut(s)	30, 133, 365
PceI	AGGCCT	1 cut(s)	298
PflMI	CCANNNNNTGG	1 cut(s)	110
Ple19I	CGATCG	1 cut(s)	379
PspN4I	GGNNCC	3 cut(s)	30, 133, 365
PsuI	RGATCY	1 cut(s)	77
PvuI	CGATCG	1 cut(s)	379
RsaI	GTAC	2 cut(s)	263, 413
RsaNI	GTAC	2 cut(s)	262, 412
RseI	CAYNNNNRTG	2 cut(s)	103, 125
SaqAI	TTAA	3 cut(s)	335, 372, 399
Sau3AI	GATC	4 cut(s)	37, 77, 150, 376
SduI	GDGCHC	1 cut(s)	31
SfaNI	GCATC	2 cut(s)	214, 277
SmiMI	CAYNNNNRTG	2 cut(s)	103, 125
SseBI	AGGCCT	1 cut(s)	298
SsiI	CCGC	2 cut(s)	55, 101
SspMI	CTAG	2 cut(s)	117, 252
StuI	AGGCCT	1 cut(s)	298
TaaI	ACNGT	1 cut(s)	247
TaqI	TCGA	2 cut(s)	36, 211
TatI	WGTACW	1 cut(s)	411
Tru1I	TTAA	3 cut(s)	335, 372, 399
Tru9I	TTAA	3 cut(s)	335, 372, 399
TscAI	CASTG	1 cut(s)	279
TspDTI	ATGAA	3 cut(s)	62, 334, 380
TspRI	CASTG	1 cut(s)	279
Van91I	CCANNNNNTGG	1 cut(s)	110
XmiI	GTMKAC	1 cut(s)	177
XspI	CTAG	2 cut(s)	117, 252

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.