pycom04g01430

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr4
OG0024629
Physical Location & Seq
Forward (+)
1315930 .. 1316352
423 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom04g01430.1

Sequence Viewer

Length: 423 bp
ATGTATCAGGCTGCTGCTTCGTCTCCTTTTGCTTTCTATTCTACCGGTAGTTCTGTTGGTGGTTCGTCTAATGGACGTGATGGTCAGTCTTCTCGACACAATGGTGCTTCTGGTTACAATCAGGCTCCTCGCAATAATGGTGGTGGACGTTCCAATCAGCATGGTGGTAGTAGGCGATATGGTCAGCGTCGTGCTATGCAGCAACAACGCCATGGTATTCTTGAACCAGCCCCTGTCAACCGTGGGCCTCTGTGTTGGGCCTGCAACCATATTGGTGAATTGTGTCCTCAAGCTACTCGGTCAGATGACGATACTTCTTGTGCTTTTGCTGGCATGCATATTGCTTCTCCCTCTTATCCAACATGGTATCCGGATACTGATGGTACTCATCATATGACGAGTGATGCTCGCTCGATGACTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

141

Amino Acids

14.99

Weight (kDa)

8.84

Isoelectric Point (pI)

75.84

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0024629)

Species Orthologous Gene IDs
pyrus_communis pycom04g01430 pycom06g06150 pycom14g10910

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 81
AccIII TCCGGA 1 cut(s) 370
AfaI GTAC 1 cut(s) 385
AgeI ACCGGT 1 cut(s) 44
AgsI TTSAA 1 cut(s) 224
AjiI CACGTC 1 cut(s) 77
AleI CACNNNNGTG 1 cut(s) 102
AluBI AGCT 1 cut(s) 293
AluI AGCT 1 cut(s) 293
Alw26I GTCTC 1 cut(s) 27
AlwNI CAGNNNCTG 1 cut(s) 233
Aor13HI TCCGGA 1 cut(s) 370
AoxI GGCC 2 cut(s) 245, 258
ApeKI GCWGC 3 cut(s) 11, 14, 199
AsiGI ACCGGT 1 cut(s) 44
AspS9I GGNCC 2 cut(s) 245, 258
AsuHPI GGTGA 1 cut(s) 287
BbsI GAAGAC 1 cut(s) 81
BbvI GCAGC 1 cut(s) 211
BccI CCATC 2 cut(s) 74, 374
BciVI GTATCC 2 cut(s) 367, 378
BcoDI GTCTC 1 cut(s) 27
BfuI GTATCC 2 cut(s) 367, 378
BisI GCNGC 3 cut(s) 12, 15, 200
BlsI GCNGC 3 cut(s) 13, 16, 201
BmgBI CACGTC 1 cut(s) 77
BmgT120I GGNCC 2 cut(s) 245, 258
BmiI GGNNCC 1 cut(s) 126
BmsI GCATC 1 cut(s) 394
BpiI GAAGAC 1 cut(s) 81
BplI GAGNNNNNCTC 2 cut(s) 391, 423
BpuEI CTTGAG 1 cut(s) 273
BsaJI CCNNGG 2 cut(s) 211, 241
BsaWI WCCGGW 2 cut(s) 44, 370
Bse118I RCCGGY 1 cut(s) 44
BseAI TCCGGA 1 cut(s) 370
BseDI CCNNGG 2 cut(s) 211, 241
BseRI GAGGAG 1 cut(s) 117
BseXI GCAGC 1 cut(s) 211
BshFI GGCC 2 cut(s) 247, 260
BshTI ACCGGT 1 cut(s) 44
BsiSI CCGG 2 cut(s) 45, 371
BsmAI GTCTC 1 cut(s) 27
BsmBI CGTCTC 1 cut(s) 27
BsnI GGCC 2 cut(s) 247, 260
Bsp13I TCCGGA 1 cut(s) 370
Bsp19I CCATGG 1 cut(s) 211
BspANI GGCC 2 cut(s) 247, 260
BspEI TCCGGA 1 cut(s) 370
BspLI GGNNCC 1 cut(s) 126
BsrFI RCCGGY 1 cut(s) 44
BssAI RCCGGY 1 cut(s) 44
BssECI CCNNGG 2 cut(s) 211, 241
BssT1I CCWWGG 1 cut(s) 211
Bst4CI ACNGT 1 cut(s) 242
BstC8I GCNNGC 4 cut(s) 262, 331, 335, 409
BstDEI CTNAG 1 cut(s) 420
BstDSI CCRYGG 2 cut(s) 211, 241
BstMAI GTCTC 1 cut(s) 27
BstNSI RCATGY 1 cut(s) 337
BstV1I GCAGC 1 cut(s) 211
BstV2I GAAGAC 1 cut(s) 81
BsuI GTATCC 2 cut(s) 367, 378
BsuRI GGCC 2 cut(s) 247, 260
BtgI CCRYGG 2 cut(s) 211, 241
BtrI CACGTC 1 cut(s) 77
Cac8I GCNNGC 4 cut(s) 262, 331, 335, 409
CaiI CAGNNNCTG 1 cut(s) 233
Cfr10I RCCGGY 1 cut(s) 44
Cfr13I GGNCC 2 cut(s) 245, 258
CseI GACGC 1 cut(s) 176
Csp6I GTAC 1 cut(s) 384
CspAI ACCGGT 1 cut(s) 44
CspCI CAANNNNNGTGG 2 cut(s) 121, 156
CviAII CATG 4 cut(s) 161, 212, 334, 363
CviJI RGCY 6 cut(s) 11, 125, 230, 247, 260, 293
CviKI_1 RGCY 6 cut(s) 11, 125, 230, 247, 260, 293
CviQI GTAC 1 cut(s) 384
DdeI CTNAG 1 cut(s) 420
DrdI GACNNNNNNGTC 1 cut(s) 81
DseDI GACNNNNNNGTC 1 cut(s) 81
Eco130I CCWWGG 1 cut(s) 211
EcoT14I CCWWGG 1 cut(s) 211
EcoT22I ATGCAT 1 cut(s) 339
ErhI CCWWGG 1 cut(s) 211
Esp3I CGTCTC 1 cut(s) 27
FaeI CATG 4 cut(s) 164, 215, 337, 366
FatI CATG 4 cut(s) 160, 211, 333, 362
FauNDI CATATG 1 cut(s) 393
Fnu4HI GCNGC 3 cut(s) 12, 15, 200
Fsp4HI GCNGC 3 cut(s) 12, 15, 200
GluI GCNGC 3 cut(s) 12, 15, 200
HaeIII GGCC 2 cut(s) 247, 260
HapII CCGG 2 cut(s) 45, 371
HgaI GACGC 1 cut(s) 176
Hin1II CATG 4 cut(s) 164, 215, 337, 366
HincII GTYRAC 1 cut(s) 238
HindII GTYRAC 1 cut(s) 238
HpaII CCGG 2 cut(s) 45, 371
HphI GGTGA 1 cut(s) 287
Hpy166II GTNNAC 2 cut(s) 146, 238
Hpy188I TCNGA 1 cut(s) 304
Hpy188III TCNNGA 3 cut(s) 93, 221, 371
Hpy8I GTNNAC 2 cut(s) 146, 238
Hpy99I CGWCG 1 cut(s) 192
HpyCH4III ACNGT 1 cut(s) 242
HpyCH4IV ACGT 2 cut(s) 76, 148
HpyCH4V TGCA 3 cut(s) 199, 264, 337
HpyF3I CTNAG 1 cut(s) 420
HpySE526I ACGT 2 cut(s) 76, 148
Hsp92II CATG 4 cut(s) 164, 215, 337, 366
Kpn2I TCCGGA 1 cut(s) 370
LmnI GCTCC 1 cut(s) 130
LpnPI CCDG 8 cut(s) 58, 96, 107, 240, 246, 274, 315, 384
Lsp1109I GCAGC 1 cut(s) 211
LweI GCATC 1 cut(s) 394
MaeII ACGT 2 cut(s) 76, 148
MaeIII GTNAC 1 cut(s) 113
MboII GAAGA 1 cut(s) 81
MluCI AATT 1 cut(s) 278
MmeI TCCRAC 1 cut(s) 383
MnlI CCTC 4 cut(s) 138, 258, 297, 361
Mph1103I ATGCAT 1 cut(s) 339
MroI TCCGGA 1 cut(s) 370
MslI CAYNNNNRTG 2 cut(s) 102, 273
MspI CCGG 2 cut(s) 45, 371
NcoI CCATGG 1 cut(s) 211
NdeI CATATG 1 cut(s) 393
NlaIII CATG 4 cut(s) 164, 215, 337, 366
NlaIV GGNNCC 1 cut(s) 126
NsiI ATGCAT 1 cut(s) 339
NspI RCATGY 1 cut(s) 337
OliI CACNNNNGTG 1 cut(s) 102
PaeI GCATGC 1 cut(s) 337
PinAI ACCGGT 1 cut(s) 44
PkrI GCNGC 3 cut(s) 13, 16, 201
PspN4I GGNNCC 1 cut(s) 126
PspPI GGNCC 2 cut(s) 245, 258
PstNI CAGNNNCTG 1 cut(s) 233
RsaI GTAC 1 cut(s) 385
RsaNI GTAC 1 cut(s) 384
RseI CAYNNNNRTG 2 cut(s) 102, 273
SatI GCNGC 3 cut(s) 12, 15, 200
Sau96I GGNCC 2 cut(s) 245, 258
SetI ASST 3 cut(s) 79, 151, 295
SfaNI GCATC 1 cut(s) 394
SmiMI CAYNNNNRTG 2 cut(s) 102, 273
SmlI CTYRAG 1 cut(s) 288
SmoI CTYRAG 1 cut(s) 288
SphI GCATGC 1 cut(s) 337
Sse9I AATT 1 cut(s) 278
StyI CCWWGG 1 cut(s) 211
TaaI ACNGT 1 cut(s) 242
TaiI ACGT 2 cut(s) 79, 151
TaqI TCGA 2 cut(s) 94, 413
TaqII GACCGA 1 cut(s) 288
TasI AATT 1 cut(s) 278
TseI GCWGC 3 cut(s) 11, 14, 199
XceI RCATGY 1 cut(s) 337
Zsp2I ATGCAT 1 cut(s) 339
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.