pycom04g05040

Abnormal spindle-like microcephaly-associated protein homolog

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr4
OG0029255
Physical Location & Seq
Forward (+)
4675289 .. 4675865
577 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 459 bp
ATGTCTTTCCATTATTCCTACATGAAATGTAATCCTAGCATGGTGTACTTAAGTTATAATCCTGCACATTCTCAGAAATGTTGTGAAAAACTCGTGGAGGAAGGAGCTATTAAAACATTGCTGAAGATTTTTGCCTCAGCCACCCGAAGTATACCCGATCAGGAGGTTCAAAAACACTTGCTCTCAACTCTAAGGAACCTTGCCCGGTATCCACACCTGGTAGAAGTGCTAATTGACAGTCCGTGCATGGATCTGAACAAGGAAGAGGGTTATTTCACCGCTTCAGAAGTTCTAAAGAAGGTTTGTGCTAGCCGTAAAGGCGTTGAAGCTGTGCGTAAATCGCCCGCTCTTTTGAAAAGGCTACACAATCTTGTTAAGGAACTTAGTAGGAAGGCTGGCAACAATGACAAGAGGTCAGATTTGAGCAAAGAATCTCTCGTTTTTTCTTCGGAAACTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Arm CH IQ

Protein Analysis

153

Amino Acids

17.21

Weight (kDa)

9.19

Isoelectric Point (pI)

52.1

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0029255)

Species Orthologous Gene IDs
pyrus_communis pycom04g05040
rosa_multiflora Rmu_co8095814.1_g000001

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 57
AccBSI CCGCTC 1 cut(s) 347
AccI GTMKAC 1 cut(s) 151
AciI CCGC 2 cut(s) 279, 345
AclWI GGATC 1 cut(s) 258
AcuI CTGAAG 2 cut(s) 143, 267
AfaI GTAC 1 cut(s) 47
AflII CTTAAG 1 cut(s) 49
AgsI TTSAA 3 cut(s) 170, 326, 355
AhdI GACNNNNNGTC 1 cut(s) 412
AjnI CCWGG 1 cut(s) 216
AluBI AGCT 2 cut(s) 107, 329
AluI AGCT 2 cut(s) 107, 329
AlwI GGATC 1 cut(s) 258
AsuC2I CCSGG 1 cut(s) 205
AsuHPI GGTGA 1 cut(s) 268
AsuNHI GCTAGC 1 cut(s) 308
BauI CACGAG 1 cut(s) 92
BbvCI CCTCAGC 1 cut(s) 136
BceAI ACGGC 1 cut(s) 297
BciT130I CCWGG 1 cut(s) 218
BciVI GTATCC 1 cut(s) 219
BcnI CCSGG 1 cut(s) 205
BfaI CTAG 2 cut(s) 36, 309
BfrI CTTAAG 1 cut(s) 49
BfuI GTATCC 1 cut(s) 219
BglI GCCNNNNNGGC 1 cut(s) 318
Bme1390I CCNGG 2 cut(s) 205, 218
BmeRI GACNNNNNGTC 1 cut(s) 412
BmiI GGNNCC 1 cut(s) 197
BmrFI CCNGG 2 cut(s) 205, 218
BmtI GCTAGC 1 cut(s) 312
Bpu10I CCTNAGC 1 cut(s) 136
BpuMI CCSGG 1 cut(s) 205
Bse3DI GCAATG 1 cut(s) 116
BseBI CCWGG 1 cut(s) 218
BseMI GCAATG 1 cut(s) 116
BseMII CTCAG 2 cut(s) 86, 150
BsgI GTGCAG 1 cut(s) 48
BsiSI CCGG 1 cut(s) 205
Bsp143I GATC 2 cut(s) 157, 250
BspACI CCGC 2 cut(s) 279, 345
BspCNI CTCAG 2 cut(s) 85, 149
BspLI GGNNCC 1 cut(s) 197
BspOI GCTAGC 1 cut(s) 312
BspPI GGATC 1 cut(s) 258
BspTI CTTAAG 1 cut(s) 49
BsrBI CCGCTC 1 cut(s) 347
BsrDI GCAATG 1 cut(s) 116
BssMI GATC 2 cut(s) 157, 250
BssNAI GTATAC 1 cut(s) 152
BssSI CACGAG 1 cut(s) 92
Bst1107I GTATAC 1 cut(s) 152
Bst2BI CACGAG 1 cut(s) 92
Bst2UI CCWGG 1 cut(s) 218
Bst4CI ACNGT 1 cut(s) 239
Bst6I CTCTTC 1 cut(s) 258
BstAFI CTTAAG 1 cut(s) 49
BstC8I GCNNGC 3 cut(s) 310, 345, 397
BstDEI CTNAG 4 cut(s) 72, 136, 191, 383
BstKTI GATC 2 cut(s) 160, 253
BstMBI GATC 2 cut(s) 157, 250
BstMWI GCNNNNNNNGC 2 cut(s) 318, 340
BstNI CCWGG 1 cut(s) 218
BstSCI CCNGG 2 cut(s) 203, 216
BstX2I RGATCY 1 cut(s) 250
BstYI RGATCY 1 cut(s) 250
BstZ17I GTATAC 1 cut(s) 152
BsuI GTATCC 1 cut(s) 219
Cac8I GCNNGC 3 cut(s) 310, 345, 397
CsiI ACCWGGT 1 cut(s) 216
Csp6I GTAC 1 cut(s) 46
CviAII CATG 3 cut(s) 22, 40, 247
CviJI RGCY 6 cut(s) 107, 140, 312, 329, 361, 395
CviKI_1 RGCY 6 cut(s) 107, 140, 312, 329, 361, 395
CviQI GTAC 1 cut(s) 46
DdeI CTNAG 4 cut(s) 72, 136, 191, 383
DpnI GATC 2 cut(s) 159, 252
DpnII GATC 2 cut(s) 157, 250
DriI GACNNNNNGTC 1 cut(s) 412
Eam1104I CTCTTC 1 cut(s) 258
Eam1105I GACNNNNNGTC 1 cut(s) 412
EarI CTCTTC 1 cut(s) 258
Eco57I CTGAAG 2 cut(s) 143, 267
EcoRII CCWGG 1 cut(s) 216
FaeI CATG 3 cut(s) 25, 43, 250
FaiI YATR 5 cut(s) 23, 41, 57, 152, 248
FatI CATG 3 cut(s) 21, 39, 246
FauI CCCGC 1 cut(s) 352
FblI GTMKAC 1 cut(s) 151
FspBI CTAG 2 cut(s) 36, 309
HapII CCGG 1 cut(s) 205
Hin1II CATG 3 cut(s) 25, 43, 250
HinfI GANTC 1 cut(s) 431
HpaII CCGG 1 cut(s) 205
HphI GGTGA 1 cut(s) 268
Hpy166II GTNNAC 2 cut(s) 46, 152
Hpy188I TCNGA 5 cut(s) 75, 255, 286, 418, 451
Hpy188III TCNNGA 1 cut(s) 161
Hpy8I GTNNAC 2 cut(s) 46, 152
HpyAV CCTTC 3 cut(s) 95, 292, 385
HpyCH4III ACNGT 1 cut(s) 239
HpyCH4V TGCA 2 cut(s) 65, 246
HpyF10VI GCNNNNNNNGC 2 cut(s) 318, 340
HpyF3I CTNAG 4 cut(s) 72, 136, 191, 383
Hsp92II CATG 3 cut(s) 25, 43, 250
Kzo9I GATC 2 cut(s) 157, 250
LmnI GCTCC 1 cut(s) 104
LpnPI CCDG 6 cut(s) 75, 146, 203, 218, 230, 381
MabI ACCWGGT 1 cut(s) 216
MaeI CTAG 2 cut(s) 36, 309
MalI GATC 2 cut(s) 159, 252
MbiI CCGCTC 1 cut(s) 347
MboI GATC 2 cut(s) 157, 250
MboII GAAGA 3 cut(s) 136, 275, 438
MflI RGATCY 1 cut(s) 250
MluCI AATT 1 cut(s) 231
MnlI CCTC 5 cut(s) 91, 145, 157, 259, 405
MseI TTAA 4 cut(s) 50, 111, 375, 457
MspCI CTTAAG 1 cut(s) 49
MspI CCGG 1 cut(s) 205
MspR9I CCNGG 2 cut(s) 205, 218
MvaI CCWGG 1 cut(s) 218
MwoI GCNNNNNNNGC 2 cut(s) 318, 340
NciI CCSGG 1 cut(s) 205
NdeII GATC 2 cut(s) 157, 250
NheI GCTAGC 1 cut(s) 308
NlaIII CATG 3 cut(s) 25, 43, 250
NlaIV GGNNCC 1 cut(s) 197
PfeI GAWTC 1 cut(s) 431
PsiI TTATAA 1 cut(s) 57
Psp6I CCWGG 1 cut(s) 216
PspGI CCWGG 1 cut(s) 216
PspN4I GGNNCC 1 cut(s) 197
PsuI RGATCY 1 cut(s) 250
RsaI GTAC 1 cut(s) 47
RsaNI GTAC 1 cut(s) 46
SaqAI TTAA 4 cut(s) 50, 111, 375, 457
Sau3AI GATC 2 cut(s) 157, 250
ScrFI CCNGG 2 cut(s) 205, 218
SetI ASST 7 cut(s) 109, 168, 201, 219, 303, 331, 416
SexAI ACCWGGT 1 cut(s) 216
SmlI CTYRAG 1 cut(s) 49
SmoI CTYRAG 1 cut(s) 49
Sse9I AATT 1 cut(s) 231
SsiI CCGC 2 cut(s) 279, 345
SspMI CTAG 2 cut(s) 36, 309
StyD4I CCNGG 2 cut(s) 203, 216
TaaI ACNGT 1 cut(s) 239
TasI AATT 1 cut(s) 231
TatI WGTACW 1 cut(s) 45
TfiI GAWTC 1 cut(s) 431
Tru1I TTAA 4 cut(s) 50, 111, 375, 457
Tru9I TTAA 4 cut(s) 50, 111, 375, 457
TspDTI ATGAA 1 cut(s) 38
TspGWI ACGGA 1 cut(s) 231
Vha464I CTTAAG 1 cut(s) 49
XmiI GTMKAC 1 cut(s) 151
XspI CTAG 2 cut(s) 36, 309
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.