Rmu_co8095814.1_g000001

Abnormal spindle-like microcephaly-associated protein homolog

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_co8095814.1
OG0029255
Physical Location & Seq
Forward (+)
1 .. 597
597 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_co8095814.1_g000001.1.cds

Sequence Viewer

Length: 382 bp
atatggctacaaggtattctcaaaaatgttgtgaaagactcgtggatgctggagcaatcaaaactttgctgaagctcattcgctcaggcagccgaagtatacccgatcaggaggttctaaagcacgcactgtcaactctaagaaaccttgctcgctatccacacttggttgaagtactaattgattgtgaagggtctgtagaaactgttctctgggagttgctaaggaacaaggaagaaggttatttcattgcttctgaacttctgaagaagatatgctctagtcataaaggtgctgaagctgtacgcaagtcacctgcccatttgaaaaggctgcgcagtcttgtggaggaacttggaaggaagtcatgcaatgagaagag
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Arm CH IQ

Protein Analysis

126

Amino Acids

14.26

Weight (kDa)

9.32

Isoelectric Point (pI)

46.23

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0029255)

Species Orthologous Gene IDs
pyrus_communis pycom04g05040
rosa_multiflora Rmu_co8095814.1_g000001

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 324
Acc16I TGCGCA 1 cut(s) 337
Acc36I ACCTGC 1 cut(s) 324
AccI GTMKAC 1 cut(s) 99
AcuI CTGAAG 3 cut(s) 91, 286, 317
AfaI GTAC 2 cut(s) 176, 305
AgsI TTSAA 2 cut(s) 172, 327
AluBI AGCT 2 cut(s) 75, 301
AluI AGCT 2 cut(s) 75, 301
ApeKI GCWGC 2 cut(s) 89, 333
Asp700I GAANNNNTTC 1 cut(s) 206
AspLEI GCGC 1 cut(s) 338
AsuHPI GGTGA 1 cut(s) 305
BauI CACGAG 1 cut(s) 40
BbvI GCAGC 2 cut(s) 101, 320
BfaI CTAG 1 cut(s) 281
BfmI CTRYAG 1 cut(s) 197
BfuAI ACCTGC 1 cut(s) 324
BisI GCNGC 2 cut(s) 90, 334
BlsI GCNGC 2 cut(s) 91, 335
BmcAI AGTACT 1 cut(s) 176
BmsI GCATC 1 cut(s) 36
BpmI CTGGAG 1 cut(s) 71
Bpu10I CCTNAGC 2 cut(s) 84, 223
Bse3DI GCAATG 2 cut(s) 248, 378
BseGI GGATG 1 cut(s) 51
BseMI GCAATG 2 cut(s) 248, 378
BseMII CTCAG 1 cut(s) 98
BseXI GCAGC 2 cut(s) 101, 320
Bsp143I GATC 1 cut(s) 105
BspCNI CTCAG 1 cut(s) 97
BspMI ACCTGC 1 cut(s) 324
BsrDI GCAATG 2 cut(s) 248, 378
BssMI GATC 1 cut(s) 105
BssNAI GTATAC 1 cut(s) 100
BssSI CACGAG 1 cut(s) 40
Bst1107I GTATAC 1 cut(s) 100
Bst2BI CACGAG 1 cut(s) 40
Bst4CI ACNGT 2 cut(s) 131, 207
Bst6I CTCTTC 1 cut(s) 373
BstC8I GCNNGC 2 cut(s) 125, 153
BstDEI CTNAG 3 cut(s) 84, 139, 223
BstF5I GGATG 1 cut(s) 51
BstHHI GCGC 1 cut(s) 338
BstKTI GATC 1 cut(s) 108
BstMBI GATC 1 cut(s) 105
BstMWI GCNNNNNNNGC 1 cut(s) 89
BstSFI CTRYAG 1 cut(s) 197
BstV1I GCAGC 2 cut(s) 101, 320
BstZ17I GTATAC 1 cut(s) 100
BtsCI GGATG 1 cut(s) 51
BtsIMutI CAGTG 1 cut(s) 127
BveI ACCTGC 1 cut(s) 324
Cac8I GCNNGC 2 cut(s) 125, 153
CfoI GCGC 1 cut(s) 338
Csp6I GTAC 2 cut(s) 175, 304
CviAII CATG 1 cut(s) 368
CviJI RGCY 5 cut(s) 7, 75, 92, 301, 333
CviKI_1 RGCY 5 cut(s) 7, 75, 92, 301, 333
CviQI GTAC 2 cut(s) 175, 304
DdeI CTNAG 3 cut(s) 84, 139, 223
DpnI GATC 1 cut(s) 107
DpnII GATC 1 cut(s) 105
Eam1104I CTCTTC 1 cut(s) 373
EarI CTCTTC 1 cut(s) 373
Eco57I CTGAAG 3 cut(s) 91, 286, 317
FaeI CATG 1 cut(s) 371
FaiI YATR 5 cut(s) 4, 100, 276, 287, 369
FatI CATG 1 cut(s) 367
FblI GTMKAC 1 cut(s) 99
Fnu4HI GCNGC 2 cut(s) 90, 334
FokI GGATG 1 cut(s) 58
Fsp4HI GCNGC 2 cut(s) 90, 334
FspBI CTAG 1 cut(s) 281
FspI TGCGCA 1 cut(s) 337
GlaI GCGC 1 cut(s) 337
GluI GCNGC 2 cut(s) 90, 334
GsuI CTGGAG 1 cut(s) 71
HhaI GCGC 1 cut(s) 338
Hin1II CATG 1 cut(s) 371
Hin6I GCGC 1 cut(s) 336
HinP1I GCGC 1 cut(s) 336
HincII GTYRAC 1 cut(s) 134
HindII GTYRAC 1 cut(s) 134
HinfI GANTC 1 cut(s) 38
HphI GGTGA 1 cut(s) 305
Hpy166II GTNNAC 2 cut(s) 100, 134
Hpy188I TCNGA 2 cut(s) 258, 266
Hpy188III TCNNGA 1 cut(s) 109
Hpy8I GTNNAC 2 cut(s) 100, 134
HpyAV CCTTC 3 cut(s) 184, 232, 353
HpyCH4III ACNGT 2 cut(s) 131, 207
HpyCH4V TGCA 1 cut(s) 371
HpyF10VI GCNNNNNNNGC 1 cut(s) 89
HpyF3I CTNAG 3 cut(s) 84, 139, 223
Hsp92II CATG 1 cut(s) 371
HspAI GCGC 1 cut(s) 336
Kzo9I GATC 1 cut(s) 105
LmnI GCTCC 1 cut(s) 52
LpnPI CCDG 5 cut(s) 35, 71, 94, 198, 329
Lsp1109I GCAGC 2 cut(s) 101, 320
LweI GCATC 1 cut(s) 36
MaeI CTAG 1 cut(s) 281
MaeIII GTNAC 1 cut(s) 311
MalI GATC 1 cut(s) 107
MboI GATC 1 cut(s) 105
MboII GAAGA 3 cut(s) 247, 279, 282
MluCI AATT 1 cut(s) 179
MlyI GAGTC 1 cut(s) 32
MnlI CCTC 2 cut(s) 105, 342
MroXI GAANNNNTTC 1 cut(s) 206
MslI CAYNNNNRTG 1 cut(s) 290
MwoI GCNNNNNNNGC 1 cut(s) 89
NdeII GATC 1 cut(s) 105
NlaIII CATG 1 cut(s) 371
NmuCI GTSAC 1 cut(s) 311
NsbI TGCGCA 1 cut(s) 337
PaqCI CACCTGC 1 cut(s) 324
PdmI GAANNNNTTC 1 cut(s) 206
PkrI GCNGC 2 cut(s) 91, 335
PleI GAGTC 1 cut(s) 32
PpsI GAGTC 1 cut(s) 32
PsrI GAACNNNNNNTAC 2 cut(s) 191, 223
RsaI GTAC 2 cut(s) 176, 305
RsaNI GTAC 2 cut(s) 175, 304
RseI CAYNNNNRTG 1 cut(s) 290
SatI GCNGC 2 cut(s) 90, 334
Sau3AI GATC 1 cut(s) 105
ScaI AGTACT 1 cut(s) 176
SchI GAGTC 1 cut(s) 32
SetI ASST 8 cut(s) 16, 77, 116, 149, 243, 294, 303, 318
SfaNI GCATC 1 cut(s) 36
SfcI CTRYAG 1 cut(s) 197
SmiMI CAYNNNNRTG 1 cut(s) 290
Sse9I AATT 1 cut(s) 179
SspMI CTAG 1 cut(s) 281
TaaI ACNGT 2 cut(s) 131, 207
TasI AATT 1 cut(s) 179
TatI WGTACW 1 cut(s) 174
TscAI CASTG 1 cut(s) 134
TseFI GTSAC 1 cut(s) 311
TseI GCWGC 2 cut(s) 89, 333
Tsp45I GTSAC 1 cut(s) 311
TspDTI ATGAA 1 cut(s) 237
TspRI CASTG 1 cut(s) 134
XmiI GTMKAC 1 cut(s) 99
XmnI GAANNNNTTC 1 cut(s) 206
XspI CTAG 1 cut(s) 281
ZrmI AGTACT 1 cut(s) 176
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.