Auxin response factors (ARFs) are transcriptional factors that bind specifically to the DNA sequence 5'-TGTCTC-3' found in the auxin-responsive promoter elements (AuxREs)
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| Species | Orthologous Gene IDs |
|---|---|
| malus_domestica | MD12G1118300.v1.1 |
| pyrus_communis | pycom04g09210 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AciI | CCGC | 1 cut(s) | 50 |
| AclWI | GGATC | 1 cut(s) | 205 |
| AfaI | GTAC | 4 cut(s) | 222, 257, 380, 451 |
| AfeI | AGCGCT | 1 cut(s) | 230 |
| AluBI | AGCT | 2 cut(s) | 55, 108 |
| AluI | AGCT | 2 cut(s) | 55, 108 |
| Alw21I | GWGCWC | 1 cut(s) | 438 |
| Alw26I | GTCTC | 2 cut(s) | 127, 413 |
| AlwI | GGATC | 1 cut(s) | 205 |
| Aor51HI | AGCGCT | 1 cut(s) | 230 |
| ApeKI | GCWGC | 4 cut(s) | 52, 88, 105, 537 |
| Asp700I | GAANNNNTTC | 1 cut(s) | 145 |
| AspLEI | GCGC | 1 cut(s) | 231 |
| AsuHPI | GGTGA | 2 cut(s) | 117, 200 |
| BbsI | GAAGAC | 2 cut(s) | 304, 333 |
| Bbv12I | GWGCWC | 1 cut(s) | 438 |
| BbvI | GCAGC | 4 cut(s) | 64, 100, 117, 549 |
| BccI | CCATC | 2 cut(s) | 149, 440 |
| BceAI | ACGGC | 1 cut(s) | 519 |
| BcgI | CGANNNNNNTGC | 2 cut(s) | 143, 177 |
| BciVI | GTATCC | 1 cut(s) | 256 |
| BcoDI | GTCTC | 2 cut(s) | 127, 413 |
| BfoI | RGCGCY | 1 cut(s) | 232 |
| BfuI | GTATCC | 1 cut(s) | 256 |
| BglII | AGATCT | 1 cut(s) | 93 |
| BisI | GCNGC | 4 cut(s) | 53, 89, 106, 538 |
| BlsI | GCNGC | 4 cut(s) | 54, 90, 107, 539 |
| BoxI | GACNNNNGTC | 1 cut(s) | 333 |
| BpiI | GAAGAC | 2 cut(s) | 304, 333 |
| Bse1I | ACTGG | 5 cut(s) | 128, 142, 301, 393, 457 |
| BseGI | GGATG | 1 cut(s) | 149 |
| BseMII | CTCAG | 3 cut(s) | 75, 92, 408 |
| BseNI | ACTGG | 5 cut(s) | 128, 142, 301, 393, 457 |
| BseXI | GCAGC | 4 cut(s) | 64, 100, 117, 549 |
| BsgI | GTGCAG | 2 cut(s) | 186, 477 |
| BsiHKAI | GWGCWC | 1 cut(s) | 438 |
| BsmAI | GTCTC | 2 cut(s) | 127, 413 |
| BsmI | GAATGC | 1 cut(s) | 166 |
| Bsp1286I | GDGCHC | 1 cut(s) | 438 |
| Bsp1407I | TGTACA | 2 cut(s) | 220, 378 |
| Bsp143I | GATC | 2 cut(s) | 93, 197 |
| BspACI | CCGC | 1 cut(s) | 50 |
| BspCNI | CTCAG | 3 cut(s) | 76, 93, 409 |
| BspHI | TCATGA | 1 cut(s) | 495 |
| BspPI | GGATC | 1 cut(s) | 205 |
| BsrGI | TGTACA | 2 cut(s) | 220, 378 |
| BsrI | ACTGG | 5 cut(s) | 128, 142, 301, 393, 457 |
| BssMI | GATC | 2 cut(s) | 93, 197 |
| Bst4CI | ACNGT | 2 cut(s) | 121, 305 |
| BstAUI | TGTACA | 2 cut(s) | 220, 378 |
| BstDEI | CTNAG | 4 cut(s) | 84, 101, 284, 417 |
| BstF5I | GGATG | 1 cut(s) | 149 |
| BstH2I | RGCGCY | 1 cut(s) | 232 |
| BstHHI | GCGC | 1 cut(s) | 231 |
| BstKTI | GATC | 2 cut(s) | 96, 200 |
| BstMAI | GTCTC | 2 cut(s) | 127, 413 |
| BstMBI | GATC | 2 cut(s) | 93, 197 |
| BstMWI | GCNNNNNNNGC | 2 cut(s) | 52, 111 |
| BstPAI | GACNNNNGTC | 1 cut(s) | 333 |
| BstV1I | GCAGC | 4 cut(s) | 64, 100, 117, 549 |
| BstV2I | GAAGAC | 2 cut(s) | 304, 333 |
| BstX2I | RGATCY | 2 cut(s) | 93, 197 |
| BstYI | RGATCY | 2 cut(s) | 93, 197 |
| BsuI | GTATCC | 1 cut(s) | 256 |
| BtsCI | GGATG | 1 cut(s) | 149 |
| BtsIMutI | CAGTG | 3 cut(s) | 301, 422, 493 |
| CciI | TCATGA | 1 cut(s) | 495 |
| CfoI | GCGC | 1 cut(s) | 231 |
| Csp6I | GTAC | 4 cut(s) | 221, 256, 379, 450 |
| CviAII | CATG | 3 cut(s) | 316, 431, 496 |
| CviJI | RGCY | 4 cut(s) | 46, 55, 73, 108 |
| CviKI_1 | RGCY | 4 cut(s) | 46, 55, 73, 108 |
| CviQI | GTAC | 4 cut(s) | 221, 256, 379, 450 |
| DdeI | CTNAG | 4 cut(s) | 84, 101, 284, 417 |
| DpnI | GATC | 2 cut(s) | 95, 199 |
| DpnII | GATC | 2 cut(s) | 93, 197 |
| DraI | TTTAAA | 1 cut(s) | 42 |
| Eco47III | AGCGCT | 1 cut(s) | 230 |
| FaeI | CATG | 3 cut(s) | 319, 434, 499 |
| FaiI | YATR | 7 cut(s) | 59, 317, 369, 398, 407, 432, 497 |
| FatI | CATG | 3 cut(s) | 315, 430, 495 |
| Fnu4HI | GCNGC | 4 cut(s) | 53, 89, 106, 538 |
| FokI | GGATG | 1 cut(s) | 136 |
| Fsp4HI | GCNGC | 4 cut(s) | 53, 89, 106, 538 |
| GlaI | GCGC | 1 cut(s) | 230 |
| GluI | GCNGC | 4 cut(s) | 53, 89, 106, 538 |
| HaeII | RGCGCY | 1 cut(s) | 232 |
| HhaI | GCGC | 1 cut(s) | 231 |
| Hin1II | CATG | 3 cut(s) | 319, 434, 499 |
| Hin6I | GCGC | 1 cut(s) | 229 |
| HinP1I | GCGC | 1 cut(s) | 229 |
| HinfI | GANTC | 3 cut(s) | 320, 520, 530 |
| HphI | GGTGA | 2 cut(s) | 117, 200 |
| Hpy166II | GTNNAC | 1 cut(s) | 221 |
| Hpy188I | TCNGA | 5 cut(s) | 102, 154, 187, 325, 418 |
| Hpy188III | TCNNGA | 5 cut(s) | 195, 290, 344, 443, 496 |
| Hpy8I | GTNNAC | 1 cut(s) | 221 |
| HpyAV | CCTTC | 1 cut(s) | 236 |
| HpyCH4III | ACNGT | 2 cut(s) | 121, 305 |
| HpyCH4IV | ACGT | 2 cut(s) | 330, 546 |
| HpyCH4V | TGCA | 3 cut(s) | 164, 203, 458 |
| HpyF10VI | GCNNNNNNNGC | 2 cut(s) | 52, 111 |
| HpyF3I | CTNAG | 4 cut(s) | 84, 101, 284, 417 |
| HpySE526I | ACGT | 2 cut(s) | 330, 546 |
| Hsp92II | CATG | 3 cut(s) | 319, 434, 499 |
| HspAI | GCGC | 1 cut(s) | 229 |
| Kzo9I | GATC | 2 cut(s) | 93, 197 |
| Lsp1109I | GCAGC | 4 cut(s) | 64, 100, 117, 549 |
| MaeII | ACGT | 2 cut(s) | 330, 546 |
| MaeIII | GTNAC | 3 cut(s) | 3, 299, 488 |
| MalI | GATC | 2 cut(s) | 95, 199 |
| MboI | GATC | 2 cut(s) | 93, 197 |
| MboII | GAAGA | 2 cut(s) | 304, 338 |
| MflI | RGATCY | 2 cut(s) | 93, 197 |
| MhlI | GDGCHC | 1 cut(s) | 438 |
| MluCI | AATT | 3 cut(s) | 190, 374, 412 |
| MroXI | GAANNNNTTC | 1 cut(s) | 145 |
| MseI | TTAA | 2 cut(s) | 41, 462 |
| Mva1269I | GAATGC | 1 cut(s) | 166 |
| MwoI | GCNNNNNNNGC | 2 cut(s) | 52, 111 |
| NdeII | GATC | 2 cut(s) | 93, 197 |
| NlaIII | CATG | 3 cut(s) | 319, 434, 499 |
| NmuCI | GTSAC | 3 cut(s) | 3, 299, 488 |
| PagI | TCATGA | 1 cut(s) | 495 |
| PctI | GAATGC | 1 cut(s) | 166 |
| PdmI | GAANNNNTTC | 1 cut(s) | 145 |
| PfeI | GAWTC | 3 cut(s) | 320, 520, 530 |
| PkrI | GCNGC | 4 cut(s) | 54, 90, 107, 539 |
| PshAI | GACNNNNGTC | 1 cut(s) | 333 |
| PsuI | RGATCY | 2 cut(s) | 93, 197 |
| RsaI | GTAC | 4 cut(s) | 222, 257, 380, 451 |
| RsaNI | GTAC | 4 cut(s) | 221, 256, 379, 450 |
| SaqAI | TTAA | 2 cut(s) | 41, 462 |
| SatI | GCNGC | 4 cut(s) | 53, 89, 106, 538 |
| Sau3AI | GATC | 2 cut(s) | 93, 197 |
| SduI | GDGCHC | 1 cut(s) | 438 |
| SetI | ASST | 9 cut(s) | 34, 57, 110, 247, 333, 337, 351, 484, 549 |
| Sse9I | AATT | 3 cut(s) | 190, 374, 412 |
| SsiI | CCGC | 1 cut(s) | 50 |
| TaaI | ACNGT | 2 cut(s) | 121, 305 |
| TaiI | ACGT | 2 cut(s) | 333, 549 |
| TaqI | TCGA | 2 cut(s) | 268, 442 |
| TasI | AATT | 3 cut(s) | 190, 374, 412 |
| TatI | WGTACW | 2 cut(s) | 220, 378 |
| TfiI | GAWTC | 3 cut(s) | 320, 520, 530 |
| Tru1I | TTAA | 2 cut(s) | 41, 462 |
| Tru9I | TTAA | 2 cut(s) | 41, 462 |
| TscAI | CASTG | 3 cut(s) | 308, 429, 493 |
| TseFI | GTSAC | 3 cut(s) | 3, 299, 488 |
| TseI | GCWGC | 4 cut(s) | 52, 88, 105, 537 |
| Tsp45I | GTSAC | 3 cut(s) | 3, 299, 488 |
| TspDTI | ATGAA | 7 cut(s) | 138, 288, 304, 387, 484, 492, 512 |
| TspRI | CASTG | 3 cut(s) | 308, 429, 493 |
| XmnI | GAANNNNTTC | 1 cut(s) | 145 |