pycom04g10120

DRG Family Regulatory Proteins, Tma46

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr4
Physical Location & Seq
Reverse (-)
12895323 .. 12897050
1728 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom04g10120.2

Sequence Viewer

Length: 252 bp
ATGCTGTTGGCGAAGAAGCAAAAGATCGTAGAGGACAAGACCTTCGGGCTCAAGAACAAGAACAAGAGCAAGAATGTCCAGAAGTATGTTCAGATCCTCAAGCAATCTGTCCAGCCGAAACCCGATCCTTCCAAGACCGCCGCTAAGCACATCAGCAAGCAAGAGCCTAACTACACATCCAAAGTGCCAATCCCTTGGGGAGCTGTGCTAAGAGCTGAGGAGCCGTCTCCGGAGGAATCTTCTCCCGAATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

84

Amino Acids

9.34

Weight (kDa)

9.74

Isoelectric Point (pI)

74.74

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0029258)

Species Orthologous Gene IDs
pyrus_communis pycom04g10120
rosa_samantha Rh1CG302900

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccIII TCCGGA 1 cut(s) 229
AciI CCGC 2 cut(s) 138, 141
AclWI GGATC 2 cut(s) 88, 119
AluBI AGCT 2 cut(s) 203, 215
AluI AGCT 2 cut(s) 203, 215
Alw26I GTCTC 1 cut(s) 231
AlwI GGATC 2 cut(s) 88, 119
Aor13HI TCCGGA 1 cut(s) 229
ArsI GACNNNNNNTTYG 2 cut(s) 26, 58
BanII GRGCYC 1 cut(s) 51
BbvCI CCTCAGC 1 cut(s) 216
BceAI ACGGC 1 cut(s) 208
BcoDI GTCTC 1 cut(s) 231
BisI GCNGC 1 cut(s) 141
BlpI GCTNAGC 1 cut(s) 144
BlsI GCNGC 1 cut(s) 142
BmiI GGNNCC 1 cut(s) 222
Bpu10I CCTNAGC 1 cut(s) 216
Bpu1102I GCTNAGC 1 cut(s) 144
BpuEI CTTGAG 2 cut(s) 35, 83
BsaJI CCNNGG 1 cut(s) 194
BsaWI WCCGGW 1 cut(s) 229
BseAI TCCGGA 1 cut(s) 229
BseDI CCNNGG 1 cut(s) 194
BseGI GGATG 1 cut(s) 176
BseMII CTCAG 1 cut(s) 207
BseRI GAGGAG 1 cut(s) 233
BsiSI CCGG 1 cut(s) 230
BsmAI GTCTC 1 cut(s) 231
BsmBI CGTCTC 1 cut(s) 231
Bsp1286I GDGCHC 1 cut(s) 51
Bsp13I TCCGGA 1 cut(s) 229
Bsp143I GATC 3 cut(s) 24, 93, 124
Bsp1720I GCTNAGC 1 cut(s) 144
BspACI CCGC 2 cut(s) 138, 141
BspCNI CTCAG 1 cut(s) 208
BspEI TCCGGA 1 cut(s) 229
BspLI GGNNCC 1 cut(s) 222
BspPI GGATC 2 cut(s) 88, 119
BssECI CCNNGG 1 cut(s) 194
BssMI GATC 3 cut(s) 24, 93, 124
BssT1I CCWWGG 1 cut(s) 194
BstC8I GCNNGC 1 cut(s) 158
BstDEI CTNAG 3 cut(s) 144, 209, 216
BstF5I GGATG 1 cut(s) 176
BstKTI GATC 3 cut(s) 27, 96, 127
BstMAI GTCTC 1 cut(s) 231
BstMBI GATC 3 cut(s) 24, 93, 124
BstX2I RGATCY 1 cut(s) 93
BstXI CCANNNNNNTGG 1 cut(s) 195
BstYI RGATCY 1 cut(s) 93
BtsCI GGATG 1 cut(s) 176
Cac8I GCNNGC 1 cut(s) 158
CviJI RGCY 6 cut(s) 49, 115, 166, 203, 215, 223
CviKI_1 RGCY 6 cut(s) 49, 115, 166, 203, 215, 223
DdeI CTNAG 3 cut(s) 144, 209, 216
DpnI GATC 3 cut(s) 26, 95, 126
DpnII GATC 3 cut(s) 24, 93, 124
Eco130I CCWWGG 1 cut(s) 194
Eco24I GRGCYC 1 cut(s) 51
EcoT14I CCWWGG 1 cut(s) 194
EcoT38I GRGCYC 1 cut(s) 51
ErhI CCWWGG 1 cut(s) 194
Esp3I CGTCTC 1 cut(s) 231
FaiI YATR 1 cut(s) 87
Fnu4HI GCNGC 1 cut(s) 141
FokI GGATG 1 cut(s) 163
FriOI GRGCYC 1 cut(s) 51
Fsp4HI GCNGC 1 cut(s) 141
GluI GCNGC 1 cut(s) 141
HapII CCGG 1 cut(s) 230
HinfI GANTC 1 cut(s) 236
HpaII CCGG 1 cut(s) 230
Hpy188I TCNGA 1 cut(s) 93
Hpy188III TCNNGA 4 cut(s) 52, 79, 230, 245
HpyAV CCTTC 2 cut(s) 52, 138
HpyF3I CTNAG 3 cut(s) 144, 209, 216
Kpn2I TCCGGA 1 cut(s) 229
Kzo9I GATC 3 cut(s) 24, 93, 124
LmnI GCTCC 2 cut(s) 200, 220
LpnPI CCDG 3 cut(s) 92, 125, 243
MalI GATC 3 cut(s) 26, 95, 126
MboI GATC 3 cut(s) 24, 93, 124
MboII GAAGA 2 cut(s) 25, 231
MflI RGATCY 1 cut(s) 93
MhlI GDGCHC 1 cut(s) 51
MnlI CCTC 4 cut(s) 25, 107, 211, 226
MroI TCCGGA 1 cut(s) 229
MspI CCGG 1 cut(s) 230
NdeII GATC 3 cut(s) 24, 93, 124
NlaIV GGNNCC 1 cut(s) 222
PfeI GAWTC 1 cut(s) 236
PkrI GCNGC 1 cut(s) 142
PspN4I GGNNCC 1 cut(s) 222
PsuI RGATCY 1 cut(s) 93
SatI GCNGC 1 cut(s) 141
Sau3AI GATC 3 cut(s) 24, 93, 124
SduI GDGCHC 1 cut(s) 51
SetI ASST 3 cut(s) 44, 205, 217
SmlI CTYRAG 2 cut(s) 50, 98
SmoI CTYRAG 2 cut(s) 50, 98
SsiI CCGC 2 cut(s) 138, 141
StyI CCWWGG 1 cut(s) 194
TauI GCSGC 1 cut(s) 143
TfiI GAWTC 1 cut(s) 236
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.