Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr4

Orthogroup ID

OG0029261

Physical Location & Seq

Genomic Coordinates Forward (+)

16208593 .. 16211499

Gene Structure 2907 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom04g13240.7

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1404 bp

ATGGAATCCGCAGCGATTAGGGCTTTTCTGATCTGTCTAATTCTCTGCGCCGGTTCGAGCTTCGTTCATGGCGAGGAGCCGGCGAAGAATAAGTTCCGGGAACGAGAGGCCAGCGACGACGCCCTTGGATATCCGAACATAGATGAGGATGCCTTGTTGAATTCGCGGTGCCCTGCGAAATTGGAGCTCCGATGGCAAACGGAAGTTAGTTCCAGTATATATGCTACACCCTTGATCGCCGATATCAATAGTGATGGAAAGCTTGAGATCGTGGTTCCTTCTTTCGTTCACTATCTTGAAGTTCTTGAAGGTGCTGATGGAGACAAACATCCAGGTTGGCCTGCTTTCCACCAGTCAACGGTACATGCTAGTCCTCTCCTGTATGATATTGACAAGGATGGTGTGAGAGAAATAACTTTGGCAACCTACAATGGGGAAGTTTTATTTTTCAGGGTCTCAGGTTACATGATGGTAGATAAACTTGTAGTACCTCGTAGGAAAGTTAAAAAGAACTGGTATGGGGGCTTGCATTCGGATCCCGTGGATCGTACTCATCCAGATGTCCATGATGATTCTCTTGTCATGGAGGCTATGGAATCAGCTCATCAAACAAATGGAAGTACAGCTAAGTTAAACAATTCTGCTTCTATTTCAACTCCCGATTCCAACACTTCAGCTACTATTTCAACTCCTGATTTAAACAATTCAACAACTATTTCAAAAGAGAGCAACCTTGGCATGGTAAATGCATCAAATCCAGAGAATAAAGGGGAAACAAATTCAAGTCAGGTGGAAACAGTCATCAAGCTGCCTACGGGCATGGACAATTCTGCTGTAAAAAATGTGTCAGAGGAAACTGTTAATGTAGTGAATGGAACTAGATCTGGTAGACGACTTTTAGAAGATAAAAATTCAAGTGAATCACAGGATGGTGGTTCTGGATCCAAAGAGAATAATAAGGAGGATGTTCCTGTTGCAACTGTACAAAATGAGGGAAGCTTGGAAGCAGATGCTGATTCATCGTTTGAGTTGTTCCGTGACAGTGAGGAACTTGCCGATGAGTATAGTTATGACTACGATGATTATGTTGATGAATCAATGTGGGGAGATGAGGAATGGGCTGAAGGGCAGCACGAGAAAATGGAGGATTATGTCAATGTTGATGCACACATCCTCTGCACTCCTGTCATAGCGGACATTGATAATGATGGAGTATCAGAAATGGTTGTTGCTGTATCTTACTTCTTTGATCACGAGTATTACGAGTCCAATGAAGATCATCGGAAGGAATTGGGTGACATTGATCTTACAAAATATGTTGCTGGCTCAGTAGTTGTTTTTAATCTCGACACAAAGCAAGTTAAGTGGACTTCGGAAGTGCCTAGATCTGAGTACAGAGACTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005488 GO:0005509 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005783 GO:0007275 GO:0008150 GO:0009555 GO:0009653 GO:0009987 GO:0010208 GO:0010584 GO:0010927 GO:0012505 GO:0016020 GO:0016043 GO:0022607 GO:0030198 GO:0032501 GO:0032502 GO:0032989 GO:0043062 GO:0043167 GO:0043169 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044085 GO:0044424 GO:0044444 GO:0044464 GO:0045229 GO:0046872 GO:0048229 GO:0048646 GO:0048856 GO:0048869 GO:0071840 GO:0085029

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

FG-GAP VCBS

Protein Analysis

468

Amino Acids

51.76

Weight (kDa)

4.46

Isoelectric Point (pI)

39.98

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0029261)

Species	Orthologous Gene IDs
pyrus_communis	pycom04g13240 pycom12g15170

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	168
AccI	GTMKAC	1 cut(s)	889
AccII	CGCG	1 cut(s)	166
AciI	CCGC	3 cut(s)	9, 166, 1193
AclWI	GGATC	5 cut(s)	530, 543, 552, 936, 949
AcsI	RAATTY	3 cut(s)	160, 778, 910
AcuI	CTGAAG	2 cut(s)	657, 1143
AcyI	GRCGYC	1 cut(s)	120
AfaI	GTAC	6 cut(s)	363, 489, 550, 622, 984, 1394
AfiI	CCNNNNNNNGG	3 cut(s)	358, 432, 739
AgsI	TTSAA	9 cut(s)	160, 299, 308, 654, 687, 708, 720, 783, 915
AjnI	CCWGG	1 cut(s)	331
AluBI	AGCT	8 cut(s)	60, 187, 262, 602, 626, 677, 808, 999
AluI	AGCT	8 cut(s)	60, 187, 262, 602, 626, 677, 808, 999
Alw21I	GWGCWC	1 cut(s)	189
Alw26I	GTCTC	3 cut(s)	315, 460, 1392
AlwI	GGATC	5 cut(s)	530, 543, 552, 936, 949
AlwNI	CAGNNNCTG	2 cut(s)	1013, 1401
AoxI	GGCC	2 cut(s)	108, 338
ApeKI	GCWGC	3 cut(s)	11, 808, 1129
ApoI	RAATTY	3 cut(s)	160, 778, 910
Asp700I	GAANNNNTTC	1 cut(s)	92
AspLEI	GCGC	1 cut(s)	50
AsuC2I	CCSGG	1 cut(s)	98
AsuHPI	GGTGA	1 cut(s)	1307
BaeGI	GKGCMC	1 cut(s)	173
BamHI	GGATCC	2 cut(s)	535, 941
BanI	GGYRCC	1 cut(s)	168
BanII	GRGCYC	1 cut(s)	189
BauI	CACGAG	2 cut(s)	1133, 1253
Bbv12I	GWGCWC	1 cut(s)	189
BbvI	GCAGC	3 cut(s)	23, 795, 1141
BccI	CCATC	7 cut(s)	186, 248, 311, 392, 463, 923, 1202
BciT130I	CCWGG	1 cut(s)	333
BclI	TGATCA	1 cut(s)	1249
BcnI	CCSGG	1 cut(s)	98
BcoDI	GTCTC	3 cut(s)	315, 460, 1392
BfaI	CTAG	3 cut(s)	369, 879, 1383
BglII	AGATCT	2 cut(s)	881, 1385
BisI	GCNGC	3 cut(s)	12, 809, 1130
BlsI	GCNGC	3 cut(s)	13, 810, 1131
Bme1390I	CCNGG	2 cut(s)	98, 333
BmiI	GGNNCC	5 cut(s)	78, 170, 276, 537, 943
BmrFI	CCNGG	2 cut(s)	98, 333
BmsI	GCATC	4 cut(s)	139, 758, 1000, 1153
BpuEI	CTTGAG	1 cut(s)	284
BpuMI	CCSGG	1 cut(s)	98
BsaHI	GRCGYC	1 cut(s)	120
BsaI	GGTCTC	1 cut(s)	460
BsaJI	CCNNGG	3 cut(s)	124, 540, 733
Bsc4I	CCNNNNNNNGG	3 cut(s)	358, 432, 739
Bse118I	RCCGGY	2 cut(s)	50, 79
Bse1I	ACTGG	3 cut(s)	213, 352, 518
BseBI	CCWGG	1 cut(s)	333
BseDI	CCNNGG	3 cut(s)	124, 540, 733
BseGI	GGATG	7 cut(s)	154, 328, 403, 553, 934, 970, 1170
BseLI	CCNNNNNNNGG	3 cut(s)	358, 432, 739
BseMII	CTCAG	3 cut(s)	471, 1341, 1380
BseNI	ACTGG	3 cut(s)	213, 352, 518
BseRI	GAGGAG	1 cut(s)	89
BseSI	GKGCMC	1 cut(s)	173
BseXI	GCAGC	3 cut(s)	23, 795, 1141
BsgI	GTGCAG	1 cut(s)	1162
Bsh1236I	CGCG	1 cut(s)	166
BshFI	GGCC	2 cut(s)	110, 340
BshNI	GGYRCC	1 cut(s)	168
BsiHKAI	GWGCWC	1 cut(s)	189
BsiSI	CCGG	3 cut(s)	51, 80, 97
BslI	CCNNNNNNNGG	3 cut(s)	358, 432, 739
BsmAI	GTCTC	3 cut(s)	315, 460, 1392
BsmI	GAATGC	1 cut(s)	529
BsnI	GGCC	2 cut(s)	110, 340
Bso31I	GGTCTC	1 cut(s)	460
Bsp1286I	GDGCHC	2 cut(s)	173, 189
Bsp1407I	TGTACA	1 cut(s)	982
BspACI	CCGC	3 cut(s)	9, 166, 1193
BspANI	GGCC	2 cut(s)	110, 340
BspCNI	CTCAG	3 cut(s)	470, 1340, 1381
BspFNI	CGCG	1 cut(s)	166
BspLI	GGNNCC	5 cut(s)	78, 170, 276, 537, 943
BspPI	GGATC	5 cut(s)	530, 543, 552, 936, 949
BspT107I	GGYRCC	1 cut(s)	168
BspTNI	GGTCTC	1 cut(s)	460
BsrFI	RCCGGY	2 cut(s)	50, 79
BsrGI	TGTACA	1 cut(s)	982
BsrI	ACTGG	3 cut(s)	213, 352, 518
BssAI	RCCGGY	2 cut(s)	50, 79
BssECI	CCNNGG	3 cut(s)	124, 540, 733
BssNI	GRCGYC	1 cut(s)	120
BssSI	CACGAG	2 cut(s)	1133, 1253
BssT1I	CCWWGG	2 cut(s)	124, 733
Bst2BI	CACGAG	2 cut(s)	1133, 1253
Bst2UI	CCWGG	1 cut(s)	333
Bst4CI	ACNGT	5 cut(s)	361, 799, 859, 982, 1043
BstACI	GRCGYC	1 cut(s)	120
BstAUI	TGTACA	1 cut(s)	982
BstC8I	GCNNGC	5 cut(s)	81, 112, 342, 527, 1324
BstDEI	CTNAG	4 cut(s)	457, 627, 1327, 1389
BstDSI	CCRYGG	1 cut(s)	540
BstF5I	GGATG	7 cut(s)	154, 328, 403, 553, 934, 970, 1170
BstFNI	CGCG	1 cut(s)	166
BstHHI	GCGC	1 cut(s)	50
BstMAI	GTCTC	3 cut(s)	315, 460, 1392
BstMWI	GCNNNNNNNGC	3 cut(s)	20, 193, 735
BstNI	CCWGG	1 cut(s)	333
BstNSI	RCATGY	1 cut(s)	368
BstSCI	CCNGG	2 cut(s)	96, 331
BstSLI	GKGCMC	1 cut(s)	173
BstUI	CGCG	1 cut(s)	166
BstV1I	GCAGC	3 cut(s)	23, 795, 1141
BstX2I	RGATCY	4 cut(s)	535, 881, 941, 1385
BstYI	RGATCY	4 cut(s)	535, 881, 941, 1385
BsuRI	GGCC	2 cut(s)	110, 340
BtgI	CCRYGG	1 cut(s)	540
BtsCI	GGATG	7 cut(s)	154, 328, 403, 553, 934, 970, 1170
BtsIMutI	CAGTG	1 cut(s)	1048
Cac8I	GCNNGC	5 cut(s)	81, 112, 342, 527, 1324
CaiI	CAGNNNCTG	2 cut(s)	1013, 1401
CfoI	GCGC	1 cut(s)	50
Cfr10I	RCCGGY	2 cut(s)	50, 79
CseI	GACGC	1 cut(s)	128
Csp6I	GTAC	6 cut(s)	362, 488, 549, 621, 983, 1393
CspCI	CAANNNNNGTGG	4 cut(s)	771, 806, 1346, 1381
CviAII	CATG	7 cut(s)	68, 365, 466, 566, 583, 739, 820
CviQI	GTAC	6 cut(s)	362, 488, 549, 621, 983, 1393
DdeI	CTNAG	4 cut(s)	457, 627, 1327, 1389
DraI	TTTAAA	1 cut(s)	699
Ecl136II	GAGCTC	1 cut(s)	187
Eco130I	CCWWGG	2 cut(s)	124, 733
Eco24I	GRGCYC	1 cut(s)	189
Eco31I	GGTCTC	1 cut(s)	460
Eco32I	GATATC	2 cut(s)	131, 244
Eco53kI	GAGCTC	1 cut(s)	187
Eco57I	CTGAAG	2 cut(s)	657, 1143
EcoICRI	GAGCTC	1 cut(s)	187
EcoRI	GAATTC	1 cut(s)	160
EcoRII	CCWGG	1 cut(s)	331
EcoRV	GATATC	2 cut(s)	131, 244
EcoT14I	CCWWGG	2 cut(s)	124, 733
EcoT22I	ATGCAT	1 cut(s)	751
EcoT38I	GRGCYC	1 cut(s)	189
ErhI	CCWWGG	2 cut(s)	124, 733
FaeI	CATG	7 cut(s)	71, 368, 469, 569, 586, 742, 823
FatI	CATG	7 cut(s)	67, 364, 465, 565, 582, 738, 819
FbaI	TGATCA	1 cut(s)	1249
FblI	GTMKAC	1 cut(s)	889
Fnu4HI	GCNGC	3 cut(s)	12, 809, 1130
FokI	GGATG	7 cut(s)	161, 315, 410, 540, 941, 977, 1157
FriOI	GRGCYC	1 cut(s)	189
Fsp4HI	GCNGC	3 cut(s)	12, 809, 1130
FspBI	CTAG	3 cut(s)	369, 879, 1383
GlaI	GCGC	1 cut(s)	49
GluI	GCNGC	3 cut(s)	12, 809, 1130
HaeIII	GGCC	2 cut(s)	110, 340
HapII	CCGG	3 cut(s)	51, 80, 97
HgaI	GACGC	1 cut(s)	128
HhaI	GCGC	1 cut(s)	50
Hin1I	GRCGYC	1 cut(s)	120
Hin1II	CATG	7 cut(s)	71, 368, 469, 569, 586, 742, 823
Hin6I	GCGC	1 cut(s)	48
HinP1I	GCGC	1 cut(s)	48
HincII	GTYRAC	1 cut(s)	357
HindII	GTYRAC	1 cut(s)	357
HindIII	AAGCTT	2 cut(s)	260, 997
HinfI	GANTC	8 cut(s)	5, 572, 596, 662, 920, 1016, 1094, 1265
HpaII	CCGG	3 cut(s)	51, 80, 97
HphI	GGTGA	1 cut(s)	1307
Hpy166II	GTNNAC	4 cut(s)	289, 357, 890, 1368
Hpy188I	TCNGA	9 cut(s)	30, 135, 191, 535, 850, 1219, 1284, 1375, 1390
Hpy188III	TCNNGA	9 cut(s)	296, 305, 557, 659, 692, 758, 939, 1253, 1346
Hpy8I	GTNNAC	4 cut(s)	289, 357, 890, 1368
Hpy99I	CGWCG	2 cut(s)	119, 122
HpyAV	CCTTC	4 cut(s)	288, 302, 1118, 1279
HpyCH4III	ACNGT	5 cut(s)	361, 799, 859, 982, 1043
HpyCH4V	TGCA	5 cut(s)	529, 749, 977, 1166, 1179
HpyF10VI	GCNNNNNNNGC	3 cut(s)	20, 193, 735
HpyF3I	CTNAG	4 cut(s)	457, 627, 1327, 1389
Hsp92I	GRCGYC	1 cut(s)	120
Hsp92II	CATG	7 cut(s)	71, 368, 469, 569, 586, 742, 823
HspAI	GCGC	1 cut(s)	48
KroI	GCCGGC	1 cut(s)	79
KroNI	GCCGGC	1 cut(s)	81
Ksp22I	TGATCA	1 cut(s)	1249
LmnI	GCTCC	3 cut(s)	76, 184, 192
Lsp1109I	GCAGC	3 cut(s)	23, 795, 1141
LweI	GCATC	4 cut(s)	139, 758, 1000, 1153
MaeI	CTAG	3 cut(s)	369, 879, 1383
MaeIII	GTNAC	3 cut(s)	461, 1037, 1295
MboII	GAAGA	3 cut(s)	97, 914, 1286
MflI	RGATCY	4 cut(s)	535, 881, 941, 1385
MhlI	GDGCHC	2 cut(s)	173, 189
MluCI	AATT	9 cut(s)	39, 160, 179, 637, 703, 778, 826, 910, 1289
MlyI	GAGTC	1 cut(s)	1274
MmeI	TCCRAC	1 cut(s)	690
Mph1103I	ATGCAT	1 cut(s)	751
MroNI	GCCGGC	1 cut(s)	79
MroXI	GAANNNNTTC	1 cut(s)	92
MseI	TTAA	6 cut(s)	504, 632, 698, 861, 1341, 1362
MslI	CAYNNNNRTG	1 cut(s)	558
MspI	CCGG	3 cut(s)	51, 80, 97
MspR9I	CCNGG	2 cut(s)	98, 333
Mva1269I	GAATGC	1 cut(s)	529
MvaI	CCWGG	1 cut(s)	333
MvnI	CGCG	1 cut(s)	166
MwoI	GCNNNNNNNGC	3 cut(s)	20, 193, 735
NaeI	GCCGGC	1 cut(s)	81
NciI	CCSGG	1 cut(s)	98
NgoMIV	GCCGGC	1 cut(s)	79
NlaIII	CATG	7 cut(s)	71, 368, 469, 569, 586, 742, 823
NlaIV	GGNNCC	5 cut(s)	78, 170, 276, 537, 943
NmuCI	GTSAC	2 cut(s)	1037, 1295
NsiI	ATGCAT	1 cut(s)	751
NspI	RCATGY	1 cut(s)	368
PcsI	WCGNNNNNNNCGW	2 cut(s)	69, 1260
PctI	GAATGC	1 cut(s)	529
PdiI	GCCGGC	1 cut(s)	81
PdmI	GAANNNNTTC	1 cut(s)	92
PfeI	GAWTC	7 cut(s)	5, 572, 596, 662, 920, 1016, 1094
PfoI	TCCNGGA	1 cut(s)	96
PkrI	GCNGC	3 cut(s)	13, 810, 1131
PleI	GAGTC	1 cut(s)	1273
PpsI	GAGTC	1 cut(s)	1273
Psp124BI	GAGCTC	1 cut(s)	189
Psp6I	CCWGG	1 cut(s)	331
PspGI	CCWGG	1 cut(s)	331
PspN4I	GGNNCC	5 cut(s)	78, 170, 276, 537, 943
PstNI	CAGNNNCTG	2 cut(s)	1013, 1401
PsuI	RGATCY	4 cut(s)	535, 881, 941, 1385
RsaI	GTAC	6 cut(s)	363, 489, 550, 622, 984, 1394
RsaNI	GTAC	6 cut(s)	362, 488, 549, 621, 983, 1393
RseI	CAYNNNNRTG	1 cut(s)	558
SacI	GAGCTC	1 cut(s)	189
SaqAI	TTAA	6 cut(s)	504, 632, 698, 861, 1341, 1362
SatI	GCNGC	3 cut(s)	12, 809, 1130
SchI	GAGTC	1 cut(s)	1274
ScrFI	CCNGG	2 cut(s)	98, 333
SduI	GDGCHC	2 cut(s)	173, 189
SfaNI	GCATC	4 cut(s)	139, 758, 1000, 1153
SmiMI	CAYNNNNRTG	1 cut(s)	558
SmlI	CTYRAG	1 cut(s)	263
SmoI	CTYRAG	1 cut(s)	263
Sse9I	AATT	9 cut(s)	39, 160, 179, 637, 703, 778, 826, 910, 1289
SsiI	CCGC	3 cut(s)	9, 166, 1193
SspMI	CTAG	3 cut(s)	369, 879, 1383
SstI	GAGCTC	1 cut(s)	189
StyD4I	CCNGG	2 cut(s)	96, 331
StyI	CCWWGG	2 cut(s)	124, 733
TaaI	ACNGT	5 cut(s)	361, 799, 859, 982, 1043
TaqI	TCGA	2 cut(s)	56, 1347
TasI	AATT	9 cut(s)	39, 160, 179, 637, 703, 778, 826, 910, 1289
TatI	WGTACW	3 cut(s)	620, 982, 1392
TfiI	GAWTC	7 cut(s)	5, 572, 596, 662, 920, 1016, 1094
Tru1I	TTAA	6 cut(s)	504, 632, 698, 861, 1341, 1362
Tru9I	TTAA	6 cut(s)	504, 632, 698, 861, 1341, 1362
TscAI	CASTG	1 cut(s)	1048
TseFI	GTSAC	2 cut(s)	1037, 1295
TseI	GCWGC	3 cut(s)	11, 808, 1129
Tsp45I	GTSAC	2 cut(s)	1037, 1295
TspDTI	ATGAA	4 cut(s)	56, 1008, 1107, 1287
TspGWI	ACGGA	2 cut(s)	215, 1025
TspRI	CASTG	1 cut(s)	1048
XapI	RAATTY	3 cut(s)	160, 778, 910
XceI	RCATGY	1 cut(s)	368
XmiI	GTMKAC	1 cut(s)	889
XmnI	GAANNNNTTC	1 cut(s)	92
XspI	CTAG	3 cut(s)	369, 879, 1383
Zsp2I	ATGCAT	1 cut(s)	751

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.