Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr4

Orthogroup ID

OG0029262

Physical Location & Seq

Genomic Coordinates Forward (+)

16756453 .. 16757906

Gene Structure 1454 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 663 bp

ATGGAAGACCAACCGTCGTCTTCCTCCTCCTCCGCCTCCTCATCTTCTTCTTCTGCTGCTGCTTCGACCAGTAGGGACACTTCGGGCAGTGCTGCTGCTTCTGTCGCTACGACGTCGTCTTCGAACGCTTCCCAGGTGCGGGAAGAGGAGGACGATGACAATCGGTACCAGCAACACAACCATTTCCGGCATCCGGAGCTGGAGCAAAACCACGAATTCGGCACTTTGTACGGTGGAAATGTGCCGGCGTTCGATGAGGTGTCGACGGTGATTACGGATGACACGTGGTCCTGCATCATCGTCCTCCTCACCTTCTGGTTCTTCGTGTCGATGACTTTGATTTTGGGAGTTTACGGGTCTTCGAGTTTGGAACTTGGCCCTAATACTTCAATTCTTCTGCAACCTAACCCATTTTTTGTGCAGTCTATTCAGGTAGTACAAGAGCTGAATATATCAAATCCCGGACCTATACTATATGGTTTCTACAGTAGTCCACCTCTTGATACTGCCACCATTTGGTCTGAAACGCGTACTGTCTCGGTTCAAGCTGATTCCCATACGGCAAGACTGGATATATTACCTAAATGCGGGGTCTCAAATAAGTATATCATACAGCGTGAACTCTCCGAGCTCATCTGTTTTTCTTATTATCGCTCAAGGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000151 GO:0003674 GO:0003824 GO:0004842 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0006464 GO:0006807 GO:0008150 GO:0008152 GO:0009987 GO:0016567 GO:0016740 GO:0019538 GO:0019787 GO:0019899 GO:0031625 GO:0032446 GO:0032991 GO:0036211 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044389 GO:0044424 GO:0044464 GO:0070647 GO:0071704 GO:0140096 GO:1901564 GO:1902494 GO:1990234

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DUF4792 DUF4793 zf-C3HC4_3

Protein Analysis

221

Amino Acids

24.13

Weight (kDa)

4.57

Isoelectric Point (pI)

55.38

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0029262)

Species	Orthologous Gene IDs
pyrus_communis	pycom04g13860
rosa_multiflora	Rmu_co8268793.1_g000001

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	116
Acc65I	GGTACC	1 cut(s)	165
AccB1I	GGYRCC	1 cut(s)	165
AccB7I	CCANNNNNTGG	1 cut(s)	516
AccI	GTMKAC	1 cut(s)	263
AccII	CGCG	1 cut(s)	529
AccIII	TCCGGA	1 cut(s)	193
AciI	CCGC	3 cut(s)	33, 139, 588
AcsI	RAATTY	1 cut(s)	215
AcvI	CACGTG	1 cut(s)	285
AcyI	GRCGYC	1 cut(s)	113
AfaI	GTAC	4 cut(s)	167, 230, 438, 532
AfiI	CCNNNNNNNGG	5 cut(s)	138, 139, 193, 516, 587
AflIII	ACRYGT	2 cut(s)	282, 527
AgsI	TTSAA	2 cut(s)	390, 545
AhdI	GACNNNNNGTC	2 cut(s)	13, 286
AjnI	CCWGG	1 cut(s)	132
AluBI	AGCT	4 cut(s)	199, 445, 548, 631
AluI	AGCT	4 cut(s)	199, 445, 548, 631
Alw21I	GWGCWC	1 cut(s)	633
Alw26I	GTCTC	2 cut(s)	541, 598
Aor13HI	TCCGGA	1 cut(s)	193
AoxI	GGCC	1 cut(s)	376
ApeKI	GCWGC	4 cut(s)	56, 59, 92, 95
ApoI	RAATTY	1 cut(s)	215
ArsI	GACNNNNNNTTYG	4 cut(s)	103, 135, 325, 357
Asp718I	GGTACC	1 cut(s)	165
AspS9I	GGNCC	3 cut(s)	288, 377, 464
AsuC2I	CCSGG	1 cut(s)	462
AsuHPI	GGTGA	2 cut(s)	280, 301
AsuII	TTCGAA	1 cut(s)	122
AvaII	GGWCC	2 cut(s)	288, 464
BanI	GGYRCC	1 cut(s)	165
BanII	GRGCYC	1 cut(s)	633
BarI	GAAGNNNNNNTAC	2 cut(s)	64, 96
BbrPI	CACGTG	1 cut(s)	285
BbsI	GAAGAC	4 cut(s)	12, 12, 111, 351
Bbv12I	GWGCWC	1 cut(s)	633
BbvI	GCAGC	4 cut(s)	43, 46, 79, 82
BceAI	ACGGC	1 cut(s)	576
BciT130I	CCWGG	1 cut(s)	134
BcnI	CCSGG	1 cut(s)	462
BcoDI	GTCTC	2 cut(s)	541, 598
BfmI	CTRYAG	1 cut(s)	484
BisI	GCNGC	4 cut(s)	57, 60, 93, 96
BlsI	GCNGC	4 cut(s)	58, 61, 94, 97
Bme1390I	CCNGG	2 cut(s)	134, 462
Bme18I	GGWCC	2 cut(s)	288, 464
BmeRI	GACNNNNNGTC	2 cut(s)	13, 286
BmgT120I	GGNCC	3 cut(s)	288, 377, 464
BmiI	GGNNCC	1 cut(s)	167
BmrFI	CCNGG	2 cut(s)	134, 462
BmsI	GCATC	2 cut(s)	199, 303
BpiI	GAAGAC	4 cut(s)	12, 12, 111, 351
BpmI	CTGGAG	1 cut(s)	221
Bpu14I	TTCGAA	1 cut(s)	122
BpuEI	CTTGAG	1 cut(s)	640
BpuMI	CCSGG	1 cut(s)	462
BsaAI	YACGTR	1 cut(s)	285
BsaBI	GATNNNNATC	1 cut(s)	159
BsaHI	GRCGYC	1 cut(s)	113
BsaI	GGTCTC	1 cut(s)	598
BsaJI	CCNNGG	1 cut(s)	132
BsaWI	WCCGGW	1 cut(s)	193
Bsc4I	CCNNNNNNNGG	5 cut(s)	138, 139, 193, 516, 587
Bse118I	RCCGGY	1 cut(s)	244
Bse1I	ACTGG	2 cut(s)	69, 573
Bse8I	GATNNNNATC	1 cut(s)	159
BseAI	TCCGGA	1 cut(s)	193
BseBI	CCWGG	1 cut(s)	134
BseDI	CCNNGG	1 cut(s)	132
BseGI	GGATG	2 cut(s)	190, 283
BseJI	GATNNNNATC	1 cut(s)	159
BseLI	CCNNNNNNNGG	5 cut(s)	138, 139, 193, 516, 587
BseNI	ACTGG	2 cut(s)	69, 573
BseRI	GAGGAG	5 cut(s)	16, 19, 28, 161, 296
BseXI	GCAGC	4 cut(s)	43, 46, 79, 82
BsgI	GTGCAG	1 cut(s)	440
Bsh1236I	CGCG	1 cut(s)	529
BshFI	GGCC	1 cut(s)	378
BshNI	GGYRCC	1 cut(s)	165
BsiHKAI	GWGCWC	1 cut(s)	633
BsiSI	CCGG	4 cut(s)	187, 194, 245, 462
BslFI	GGGAC	1 cut(s)	89
BslI	CCNNNNNNNGG	5 cut(s)	138, 139, 193, 516, 587
BsmAI	GTCTC	2 cut(s)	541, 598
BsmFI	GGGAC	1 cut(s)	89
BsnI	GGCC	1 cut(s)	378
Bso31I	GGTCTC	1 cut(s)	598
Bsp119I	TTCGAA	1 cut(s)	122
Bsp1286I	GDGCHC	1 cut(s)	633
Bsp13I	TCCGGA	1 cut(s)	193
BspACI	CCGC	3 cut(s)	33, 139, 588
BspANI	GGCC	1 cut(s)	378
BspEI	TCCGGA	1 cut(s)	193
BspFNI	CGCG	1 cut(s)	529
BspLI	GGNNCC	1 cut(s)	167
BspT104I	TTCGAA	1 cut(s)	122
BspT107I	GGYRCC	1 cut(s)	165
BspTNI	GGTCTC	1 cut(s)	598
BsrFI	RCCGGY	1 cut(s)	244
BsrI	ACTGG	2 cut(s)	69, 573
BssAI	RCCGGY	1 cut(s)	244
BssECI	CCNNGG	1 cut(s)	132
BssNI	GRCGYC	1 cut(s)	113
Bst2UI	CCWGG	1 cut(s)	134
Bst4CI	ACNGT	5 cut(s)	15, 233, 268, 488, 535
Bst6I	CTCTTC	1 cut(s)	138
BstACI	GRCGYC	1 cut(s)	113
BstBAI	YACGTR	1 cut(s)	285
BstBI	TTCGAA	1 cut(s)	122
BstC8I	GCNNGC	1 cut(s)	246
BstF5I	GGATG	2 cut(s)	190, 283
BstFNI	CGCG	1 cut(s)	529
BstMAI	GTCTC	2 cut(s)	541, 598
BstMWI	GCNNNNNNNGC	2 cut(s)	104, 196
BstNI	CCWGG	1 cut(s)	134
BstSCI	CCNGG	2 cut(s)	132, 460
BstSFI	CTRYAG	1 cut(s)	484
BstUI	CGCG	1 cut(s)	529
BstV1I	GCAGC	4 cut(s)	43, 46, 79, 82
BstV2I	GAAGAC	4 cut(s)	12, 12, 111, 351
BsuRI	GGCC	1 cut(s)	378
BtsCI	GGATG	2 cut(s)	190, 283
BtsI	GCAGTG	1 cut(s)	94
BtsIMutI	CAGTG	1 cut(s)	94
Cac8I	GCNNGC	1 cut(s)	246
Cfr10I	RCCGGY	1 cut(s)	244
Cfr13I	GGNCC	3 cut(s)	288, 377, 464
Csp6I	GTAC	4 cut(s)	166, 229, 437, 531
CviJI	RGCY	5 cut(s)	199, 378, 445, 548, 631
CviKI_1	RGCY	5 cut(s)	199, 378, 445, 548, 631
CviQI	GTAC	4 cut(s)	166, 229, 437, 531
DriI	GACNNNNNGTC	2 cut(s)	13, 286
Eam1104I	CTCTTC	1 cut(s)	138
Eam1105I	GACNNNNNGTC	2 cut(s)	13, 286
EarI	CTCTTC	1 cut(s)	138
EciI	GGCGGA	1 cut(s)	22
Ecl136II	GAGCTC	1 cut(s)	631
Eco24I	GRGCYC	1 cut(s)	633
Eco31I	GGTCTC	1 cut(s)	598
Eco47I	GGWCC	2 cut(s)	288, 464
Eco53kI	GAGCTC	1 cut(s)	631
Eco72I	CACGTG	1 cut(s)	285
EcoICRI	GAGCTC	1 cut(s)	631
EcoRI	GAATTC	1 cut(s)	215
EcoRII	CCWGG	1 cut(s)	132
EcoT38I	GRGCYC	1 cut(s)	633
FaiI	YATR	8 cut(s)	452, 470, 475, 477, 558, 575, 606, 611
FaqI	GGGAC	1 cut(s)	89
FauI	CCCGC	2 cut(s)	132, 581
FblI	GTMKAC	1 cut(s)	263
Fnu4HI	GCNGC	4 cut(s)	57, 60, 93, 96
FokI	GGATG	2 cut(s)	177, 290
FriOI	GRGCYC	1 cut(s)	633
Fsp4HI	GCNGC	4 cut(s)	57, 60, 93, 96
GluI	GCNGC	4 cut(s)	57, 60, 93, 96
GsuI	CTGGAG	1 cut(s)	221
HaeIII	GGCC	1 cut(s)	378
HapII	CCGG	4 cut(s)	187, 194, 245, 462
Hin1I	GRCGYC	1 cut(s)	113
HincII	GTYRAC	1 cut(s)	264
HindII	GTYRAC	1 cut(s)	264
HinfI	GANTC	1 cut(s)	551
HpaII	CCGG	4 cut(s)	187, 194, 245, 462
HphI	GGTGA	2 cut(s)	280, 301
Hpy166II	GTNNAC	4 cut(s)	264, 352, 494, 620
Hpy188I	TCNGA	2 cut(s)	523, 628
Hpy188III	TCNNGA	2 cut(s)	194, 500
Hpy8I	GTNNAC	4 cut(s)	264, 352, 494, 620
Hpy99I	CGWCG	4 cut(s)	19, 115, 118, 268
HpyAV	CCTTC	1 cut(s)	322
HpyCH4III	ACNGT	5 cut(s)	15, 233, 268, 488, 535
HpyCH4IV	ACGT	2 cut(s)	113, 284
HpyCH4V	TGCA	3 cut(s)	294, 400, 421
HpyF10VI	GCNNNNNNNGC	2 cut(s)	104, 196
HpySE526I	ACGT	2 cut(s)	113, 284
Hsp92I	GRCGYC	1 cut(s)	113
Kpn2I	TCCGGA	1 cut(s)	193
KpnI	GGTACC	1 cut(s)	169
KroI	GCCGGC	1 cut(s)	244
KroNI	GCCGGC	1 cut(s)	246
LmnI	GCTCC	2 cut(s)	196, 202
Lsp1109I	GCAGC	4 cut(s)	43, 46, 79, 82
LweI	GCATC	2 cut(s)	199, 303
MaeII	ACGT	2 cut(s)	113, 284
MhlI	GDGCHC	1 cut(s)	633
MluCI	AATT	2 cut(s)	215, 390
MluI	ACGCGT	1 cut(s)	527
MroI	TCCGGA	1 cut(s)	193
MroNI	GCCGGC	1 cut(s)	244
MspI	CCGG	4 cut(s)	187, 194, 245, 462
MspR9I	CCNGG	2 cut(s)	134, 462
MvaI	CCWGG	1 cut(s)	134
MvnI	CGCG	1 cut(s)	529
MwoI	GCNNNNNNNGC	2 cut(s)	104, 196
NaeI	GCCGGC	1 cut(s)	246
NciI	CCSGG	1 cut(s)	462
NgoMIV	GCCGGC	1 cut(s)	244
NlaIV	GGNNCC	1 cut(s)	167
NspV	TTCGAA	1 cut(s)	122
PcsI	WCGNNNNNNNCGW	2 cut(s)	119, 281
PdiI	GCCGGC	1 cut(s)	246
PfeI	GAWTC	1 cut(s)	551
PflFI	GACNNNGTC	1 cut(s)	115
PflMI	CCANNNNNTGG	1 cut(s)	516
PfoI	TCCNGGA	1 cut(s)	460
PkrI	GCNGC	4 cut(s)	58, 61, 94, 97
PmaCI	CACGTG	1 cut(s)	285
PmlI	CACGTG	1 cut(s)	285
Ppu21I	YACGTR	1 cut(s)	285
Psp124BI	GAGCTC	1 cut(s)	633
Psp6I	CCWGG	1 cut(s)	132
PspCI	CACGTG	1 cut(s)	285
PspGI	CCWGG	1 cut(s)	132
PspN4I	GGNNCC	1 cut(s)	167
PspPI	GGNCC	3 cut(s)	288, 377, 464
PsyI	GACNNNGTC	1 cut(s)	115
RsaI	GTAC	4 cut(s)	167, 230, 438, 532
RsaNI	GTAC	4 cut(s)	166, 229, 437, 531
SacI	GAGCTC	1 cut(s)	633
SalI	GTCGAC	1 cut(s)	262
SatI	GCNGC	4 cut(s)	57, 60, 93, 96
Sau96I	GGNCC	3 cut(s)	288, 377, 464
ScrFI	CCNGG	2 cut(s)	134, 462
SduI	GDGCHC	1 cut(s)	633
SfaNI	GCATC	2 cut(s)	199, 303
SfcI	CTRYAG	1 cut(s)	484
SfuI	TTCGAA	1 cut(s)	122
SinI	GGWCC	2 cut(s)	288, 464
SmlI	CTYRAG	1 cut(s)	655
SmoI	CTYRAG	1 cut(s)	655
Sse9I	AATT	2 cut(s)	215, 390
SsiI	CCGC	3 cut(s)	33, 139, 588
SstI	GAGCTC	1 cut(s)	633
StyD4I	CCNGG	2 cut(s)	132, 460
TaaI	ACNGT	5 cut(s)	15, 233, 268, 488, 535
TaiI	ACGT	2 cut(s)	116, 287
TaqI	TCGA	6 cut(s)	65, 122, 252, 263, 329, 362
TasI	AATT	2 cut(s)	215, 390
TatI	WGTACW	1 cut(s)	436
TfiI	GAWTC	1 cut(s)	551
TscAI	CASTG	1 cut(s)	94
TseI	GCWGC	4 cut(s)	56, 59, 92, 95
TspGWI	ACGGA	1 cut(s)	290
TspRI	CASTG	1 cut(s)	94
Tth111I	GACNNNGTC	1 cut(s)	115
Van91I	CCANNNNNTGG	1 cut(s)	516
VpaK11BI	GGWCC	2 cut(s)	288, 464
XapI	RAATTY	1 cut(s)	215
XmiI	GTMKAC	1 cut(s)	263
ZraI	GACGTC	1 cut(s)	114

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.