Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_co8268793.1

Orthogroup ID

OG0029262

Physical Location & Seq

Genomic Coordinates Reverse (-)

1 .. 824

Gene Structure 824 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_co8268793.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 552 bp

cttcttcttcgtcttcctcctctgcttctccatcttcttctactgatgctgtcatccatagggacactactacttccggcgccggcgcctcgtcttccagcacttcgcaggtccgcgaagaggaggacgatcacaatcagtaccaccaccaccacaatttccggcatccggagccgcaggtcaacgaaatcggaacttcttacagagtaggcttatcgggattcgatgagaccgcgtctgtgattagagatgacacgtggtcctgcatcatcgtcctcctcaccttctggttctttgtatctatgactttgattctgggagtgtacgggtctgagaccttagagcttggccctaatacttcgactcttctgcaacctaactccatatttgtgcagtctataaaggtggaagagctgaatgtatcaaaccctgggcctgtgctatatggtttctatagtgttccaccgcttaatactgtgacgacttggtcagaaacacacagtgcctctgttccagctgattctcataaggcaagtttgctttctgtggaat

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000151 GO:0003674 GO:0003824 GO:0004842 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0006464 GO:0006807 GO:0008150 GO:0008152 GO:0009987 GO:0016567 GO:0016740 GO:0019538 GO:0019787 GO:0019899 GO:0031625 GO:0032446 GO:0032991 GO:0036211 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044389 GO:0044424 GO:0044464 GO:0070647 GO:0071704 GO:0140096 GO:1901564 GO:1902494 GO:1990234

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DUF4792 DUF4793 zf-C3HC4_3

Protein Analysis

183

Amino Acids

19.82

Weight (kDa)

4.88

Isoelectric Point (pI)

48.84

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0029262)

Species	Orthologous Gene IDs
pyrus_communis	pycom04g13860
rosa_multiflora	Rmu_co8268793.1_g000001

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	486
Acc36I	ACCTGC	2 cut(s)	99, 168
AccB1I	GGYRCC	2 cut(s)	79, 85
AccII	CGCG	2 cut(s)	116, 235
AccIII	TCCGGA	1 cut(s)	168
AciI	CCGC	4 cut(s)	114, 175, 233, 466
AcvI	CACGTG	1 cut(s)	257
AcyI	GRCGYC	2 cut(s)	80, 86
AdeI	CACNNNGTG	1 cut(s)	502
AfaI	GTAC	2 cut(s)	142, 325
AfiI	CCNNNNNNNGG	2 cut(s)	120, 168
AflIII	ACRYGT	1 cut(s)	254
AhdI	GACNNNNNGTC	1 cut(s)	258
AjnI	CCWGG	1 cut(s)	429
AluBI	AGCT	3 cut(s)	345, 414, 517
AluI	AGCT	3 cut(s)	345, 414, 517
Alw26I	GTCTC	2 cut(s)	223, 328
Aor13HI	TCCGGA	1 cut(s)	168
AoxI	GGCC	2 cut(s)	348, 433
AspLEI	GCGC	2 cut(s)	82, 88
AspS9I	GGNCC	4 cut(s)	111, 260, 349, 433
AsuHPI	GGTGA	1 cut(s)	273
AvaII	GGWCC	2 cut(s)	111, 260
BanI	GGYRCC	2 cut(s)	79, 85
BbrPI	CACGTG	1 cut(s)	257
BbsI	GAAGAC	2 cut(s)	5, 86
BccI	CCATC	1 cut(s)	39
BcgI	CGANNNNNNTGC	2 cut(s)	351, 385
BciT130I	CCWGG	1 cut(s)	431
BcoDI	GTCTC	2 cut(s)	223, 328
BfmI	CTRYAG	1 cut(s)	453
BfoI	RGCGCY	2 cut(s)	83, 89
BfuAI	ACCTGC	2 cut(s)	99, 168
BisI	GCNGC	1 cut(s)	175
BlsI	GCNGC	1 cut(s)	176
Bme1390I	CCNGG	1 cut(s)	431
Bme18I	GGWCC	2 cut(s)	111, 260
BmeRI	GACNNNNNGTC	1 cut(s)	258
BmgT120I	GGNCC	4 cut(s)	111, 260, 349, 433
BmiI	GGNNCC	3 cut(s)	81, 87, 173
BmrFI	CCNGG	1 cut(s)	431
BmsI	GCATC	3 cut(s)	36, 174, 275
BpiI	GAAGAC	2 cut(s)	5, 86
BsaAI	YACGTR	1 cut(s)	257
BsaBI	GATNNNNATC	1 cut(s)	134
BsaHI	GRCGYC	2 cut(s)	80, 86
BsaI	GGTCTC	2 cut(s)	223, 328
BsaJI	CCNNGG	2 cut(s)	429, 430
BsaWI	WCCGGW	1 cut(s)	168
Bsc4I	CCNNNNNNNGG	2 cut(s)	120, 168
Bse118I	RCCGGY	1 cut(s)	82
Bse8I	GATNNNNATC	1 cut(s)	134
BseAI	TCCGGA	1 cut(s)	168
BseBI	CCWGG	1 cut(s)	431
BseDI	CCNNGG	2 cut(s)	429, 430
BseGI	GGATG	2 cut(s)	53, 165
BseJI	GATNNNNATC	1 cut(s)	134
BseLI	CCNNNNNNNGG	2 cut(s)	120, 168
BseMII	CTCAG	1 cut(s)	323
BseRI	GAGGAG	3 cut(s)	9, 136, 268
BsgI	GTGCAG	1 cut(s)	412
Bsh1236I	CGCG	2 cut(s)	116, 235
BshFI	GGCC	2 cut(s)	350, 435
BshNI	GGYRCC	2 cut(s)	79, 85
BsiSI	CCGG	4 cut(s)	77, 83, 162, 169
BslFI	GGGAC	1 cut(s)	76
BslI	CCNNNNNNNGG	2 cut(s)	120, 168
BsmAI	GTCTC	2 cut(s)	223, 328
BsmFI	GGGAC	1 cut(s)	76
BsnI	GGCC	2 cut(s)	350, 435
Bso31I	GGTCTC	2 cut(s)	223, 328
Bsp13I	TCCGGA	1 cut(s)	168
Bsp143I	GATC	1 cut(s)	129
BspACI	CCGC	4 cut(s)	114, 175, 233, 466
BspANI	GGCC	2 cut(s)	350, 435
BspCNI	CTCAG	1 cut(s)	324
BspEI	TCCGGA	1 cut(s)	168
BspFNI	CGCG	2 cut(s)	116, 235
BspLI	GGNNCC	3 cut(s)	81, 87, 173
BspMI	ACCTGC	2 cut(s)	99, 168
BspQI	GCTCTTC	1 cut(s)	404
BspT107I	GGYRCC	2 cut(s)	79, 85
BspTNI	GGTCTC	2 cut(s)	223, 328
BsrFI	RCCGGY	1 cut(s)	82
BssAI	RCCGGY	1 cut(s)	82
BssECI	CCNNGG	2 cut(s)	429, 430
BssMI	GATC	1 cut(s)	129
BssNI	GRCGYC	2 cut(s)	80, 86
Bst2UI	CCWGG	1 cut(s)	431
Bst4CI	ACNGT	2 cut(s)	477, 502
Bst6I	CTCTTC	3 cut(s)	113, 371, 404
BstACI	GRCGYC	2 cut(s)	80, 86
BstBAI	YACGTR	1 cut(s)	257
BstC8I	GCNNGC	1 cut(s)	84
BstDEI	CTNAG	2 cut(s)	332, 339
BstF5I	GGATG	2 cut(s)	53, 165
BstFNI	CGCG	2 cut(s)	116, 235
BstH2I	RGCGCY	2 cut(s)	83, 89
BstHHI	GCGC	2 cut(s)	82, 88
BstKTI	GATC	1 cut(s)	132
BstMAI	GTCTC	2 cut(s)	223, 328
BstMBI	GATC	1 cut(s)	129
BstMWI	GCNNNNNNNGC	1 cut(s)	171
BstNI	CCWGG	1 cut(s)	431
BstSCI	CCNGG	1 cut(s)	429
BstSFI	CTRYAG	1 cut(s)	453
BstUI	CGCG	2 cut(s)	116, 235
BstV2I	GAAGAC	2 cut(s)	5, 86
BsuRI	GGCC	2 cut(s)	350, 435
BtsCI	GGATG	2 cut(s)	53, 165
BtsIMutI	CAGTG	1 cut(s)	507
BveI	ACCTGC	2 cut(s)	99, 168
Cac8I	GCNNGC	1 cut(s)	84
CfoI	GCGC	2 cut(s)	82, 88
Cfr10I	RCCGGY	1 cut(s)	82
Cfr13I	GGNCC	4 cut(s)	111, 260, 349, 433
CseI	GACGC	1 cut(s)	224
Csp6I	GTAC	2 cut(s)	141, 324
CviJI	RGCY	7 cut(s)	174, 212, 345, 350, 414, 435, 517
CviKI_1	RGCY	7 cut(s)	174, 212, 345, 350, 414, 435, 517
CviQI	GTAC	2 cut(s)	141, 324
DdeI	CTNAG	2 cut(s)	332, 339
DinI	GGCGCC	2 cut(s)	81, 87
DpnI	GATC	1 cut(s)	131
DpnII	GATC	1 cut(s)	129
DraIII	CACNNNGTG	1 cut(s)	502
DrdI	GACNNNNNNGTC	1 cut(s)	486
DriI	GACNNNNNGTC	1 cut(s)	258
DseDI	GACNNNNNNGTC	1 cut(s)	486
Eam1104I	CTCTTC	3 cut(s)	113, 371, 404
Eam1105I	GACNNNNNGTC	1 cut(s)	258
EarI	CTCTTC	3 cut(s)	113, 371, 404
Eco31I	GGTCTC	2 cut(s)	223, 328
Eco47I	GGWCC	2 cut(s)	111, 260
Eco72I	CACGTG	1 cut(s)	257
EcoRII	CCWGG	1 cut(s)	429
EgeI	GGCGCC	2 cut(s)	81, 87
EheI	GGCGCC	2 cut(s)	81, 87
FaiI	YATR	8 cut(s)	59, 304, 385, 400, 444, 446, 455, 527
FaqI	GGGAC	1 cut(s)	76
Fnu4HI	GCNGC	1 cut(s)	175
FokI	GGATG	2 cut(s)	40, 152
Fsp4HI	GCNGC	1 cut(s)	175
GlaI	GCGC	2 cut(s)	81, 87
GluI	GCNGC	1 cut(s)	175
HaeII	RGCGCY	2 cut(s)	83, 89
HaeIII	GGCC	2 cut(s)	350, 435
HapII	CCGG	4 cut(s)	77, 83, 162, 169
HgaI	GACGC	1 cut(s)	224
HhaI	GCGC	2 cut(s)	82, 88
Hin1I	GRCGYC	2 cut(s)	80, 86
Hin6I	GCGC	2 cut(s)	80, 86
HinP1I	GCGC	2 cut(s)	80, 86
HincII	GTYRAC	1 cut(s)	183
HindII	GTYRAC	1 cut(s)	183
HinfI	GANTC	4 cut(s)	221, 312, 363, 520
HpaII	CCGG	4 cut(s)	77, 83, 162, 169
HphI	GGTGA	1 cut(s)	273
Hpy166II	GTNNAC	2 cut(s)	183, 324
Hpy188I	TCNGA	3 cut(s)	193, 333, 492
Hpy188III	TCNNGA	2 cut(s)	169, 218
Hpy8I	GTNNAC	2 cut(s)	183, 324
HpyAV	CCTTC	1 cut(s)	294
HpyCH4III	ACNGT	2 cut(s)	477, 502
HpyCH4IV	ACGT	1 cut(s)	256
HpyCH4V	TGCA	3 cut(s)	266, 372, 393
HpyF10VI	GCNNNNNNNGC	1 cut(s)	171
HpyF3I	CTNAG	2 cut(s)	332, 339
HpySE526I	ACGT	1 cut(s)	256
Hsp92I	GRCGYC	2 cut(s)	80, 86
HspAI	GCGC	2 cut(s)	80, 86
KasI	GGCGCC	2 cut(s)	79, 85
Kpn2I	TCCGGA	1 cut(s)	168
KroI	GCCGGC	1 cut(s)	82
KroNI	GCCGGC	1 cut(s)	84
Kzo9I	GATC	1 cut(s)	129
LguI	GCTCTTC	1 cut(s)	404
LmnI	GCTCC	1 cut(s)	171
LweI	GCATC	3 cut(s)	36, 174, 275
MaeII	ACGT	1 cut(s)	256
MaeIII	GTNAC	1 cut(s)	477
MalI	GATC	1 cut(s)	131
MboI	GATC	1 cut(s)	129
MboII	GAAGA	7 cut(s)	5, 26, 29, 86, 130, 358, 421
MluCI	AATT	1 cut(s)	156
Mly113I	GGCGCC	2 cut(s)	80, 86
MlyI	GAGTC	1 cut(s)	357
MnlI	CCTC	8 cut(s)	27, 30, 99, 114, 117, 286, 289, 516
MreI	CGCCGGCG	1 cut(s)	82
MroI	TCCGGA	1 cut(s)	168
MroNI	GCCGGC	1 cut(s)	82
MseI	TTAA	1 cut(s)	470
MslI	CAYNNNNRTG	1 cut(s)	388
MspA1I	CMGCKG	1 cut(s)	517
MspI	CCGG	4 cut(s)	77, 83, 162, 169
MspR9I	CCNGG	1 cut(s)	431
MvaI	CCWGG	1 cut(s)	431
MvnI	CGCG	2 cut(s)	116, 235
MwoI	GCNNNNNNNGC	1 cut(s)	171
NaeI	GCCGGC	1 cut(s)	84
NarI	GGCGCC	2 cut(s)	80, 86
NdeII	GATC	1 cut(s)	129
NgoMIV	GCCGGC	1 cut(s)	82
NlaIV	GGNNCC	3 cut(s)	81, 87, 173
NmuCI	GTSAC	1 cut(s)	477
PasI	CCCWGGG	1 cut(s)	430
PciSI	GCTCTTC	1 cut(s)	404
PdiI	GCCGGC	1 cut(s)	84
PfeI	GAWTC	3 cut(s)	221, 312, 520
PflFI	GACNNNGTC	2 cut(s)	234, 486
PkrI	GCNGC	1 cut(s)	176
PleI	GAGTC	1 cut(s)	357
PluTI	GGCGCC	2 cut(s)	83, 89
PmaCI	CACGTG	1 cut(s)	257
PmlI	CACGTG	1 cut(s)	257
PpsI	GAGTC	1 cut(s)	357
Ppu21I	YACGTR	1 cut(s)	257
Psp6I	CCWGG	1 cut(s)	429
PspCI	CACGTG	1 cut(s)	257
PspGI	CCWGG	1 cut(s)	429
PspN4I	GGNNCC	3 cut(s)	81, 87, 173
PspPI	GGNCC	4 cut(s)	111, 260, 349, 433
PsyI	GACNNNGTC	2 cut(s)	234, 486
PvuII	CAGCTG	1 cut(s)	517
RsaI	GTAC	2 cut(s)	142, 325
RsaNI	GTAC	2 cut(s)	141, 324
RseI	CAYNNNNRTG	1 cut(s)	388
SapI	GCTCTTC	1 cut(s)	404
SaqAI	TTAA	1 cut(s)	470
SatI	GCNGC	1 cut(s)	175
Sau3AI	GATC	1 cut(s)	129
Sau96I	GGNCC	4 cut(s)	111, 260, 349, 433
SchI	GAGTC	1 cut(s)	357
ScrFI	CCNGG	1 cut(s)	431
SfaNI	GCATC	3 cut(s)	36, 174, 275
SfcI	CTRYAG	1 cut(s)	453
SfoI	GGCGCC	2 cut(s)	81, 87
SgrAI	CRCCGGYG	1 cut(s)	82
SinI	GGWCC	2 cut(s)	111, 260
SmiMI	CAYNNNNRTG	1 cut(s)	388
Sse9I	AATT	1 cut(s)	156
SsiI	CCGC	4 cut(s)	114, 175, 233, 466
SspDI	GGCGCC	2 cut(s)	79, 85
StyD4I	CCNGG	1 cut(s)	429
TaaI	ACNGT	2 cut(s)	477, 502
TaiI	ACGT	1 cut(s)	259
TaqI	TCGA	2 cut(s)	224, 361
TasI	AATT	1 cut(s)	156
TauI	GCSGC	1 cut(s)	177
TfiI	GAWTC	3 cut(s)	221, 312, 520
Tru1I	TTAA	1 cut(s)	470
Tru9I	TTAA	1 cut(s)	470
TscAI	CASTG	1 cut(s)	507
TseFI	GTSAC	1 cut(s)	477
Tsp45I	GTSAC	1 cut(s)	477
TspRI	CASTG	1 cut(s)	507
Tth111I	GACNNNGTC	2 cut(s)	234, 486
VpaK11BI	GGWCC	2 cut(s)	111, 260

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.