Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr4

Orthogroup ID

OG0029263

Physical Location & Seq

Genomic Coordinates Reverse (-)

17085116 .. 17085540

Gene Structure 425 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom04g14190.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 384 bp

ATGGAAGAACACATAAAAGCTACCGGGAAGGTTCCTCCGGGAAATGAATCAGGCAAACGCCACATGGGTCCGAAAGCCACCACCAAGGAAGAAGAAGCCCGATCGATCCGGCTAACACCTGGTCCTAATGTGCAGCTGACAGTGCCATTGGAGGAACTCATTGACCGGTTGAAGTGCCCCATTGTGCGGATTTTCGCAGAGGATTATGAGAGCGTTGATGTGCTTGACGAAGAGTATAGTAGTGGATTGAGGGAGAGACGGAAGAAGTATAGTAACCGGCCGACTTTCCTGCAGATATTTGTGAATGGAGAACTGCTTGGGGGCTGTGATATTCTAAGTTCCATGCAGGAGAAGGATGAGCTTTCCAGCTTGTTTAAAAAGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006810 GO:0006811 GO:0006812 GO:0008150 GO:0009507 GO:0009532 GO:0009536 GO:0009570 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0051179 GO:0051234

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Glutaredoxin

Protein Analysis

128

Amino Acids

14.39

Weight (kDa)

5.78

Isoelectric Point (pI)

53.66

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0029263)

Species	Orthologous Gene IDs
pyrus_communis	pycom04g14140 pycom04g14190

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	187
AclWI	GGATC	1 cut(s)	100
AcoI	YGGCCR	1 cut(s)	278
AfiI	CCNNNNNNNGG	1 cut(s)	186
AgeI	ACCGGT	1 cut(s)	165
AgsI	TTSAA	1 cut(s)	172
AjnI	CCWGG	1 cut(s)	118
AluBI	AGCT	4 cut(s)	20, 136, 361, 369
AluI	AGCT	4 cut(s)	20, 136, 361, 369
Alw26I	GTCTC	1 cut(s)	250
AlwI	GGATC	1 cut(s)	100
AoxI	GGCC	1 cut(s)	278
ApeKI	GCWGC	1 cut(s)	133
AsiGI	ACCGGT	1 cut(s)	165
AspS9I	GGNCC	2 cut(s)	68, 122
AsuC2I	CCSGG	2 cut(s)	25, 39
AvaII	GGWCC	2 cut(s)	68, 122
BaeGI	GKGCMC	1 cut(s)	179
BbvI	GCAGC	1 cut(s)	145
BcgI	CGANNNNNNTGC	2 cut(s)	271, 305
BciT130I	CCWGG	1 cut(s)	120
BcnI	CCSGG	2 cut(s)	25, 39
BcoDI	GTCTC	1 cut(s)	250
BfmI	CTRYAG	1 cut(s)	290
BisI	GCNGC	1 cut(s)	134
BlsI	GCNGC	1 cut(s)	135
Bme1390I	CCNGG	3 cut(s)	25, 39, 120
Bme18I	GGWCC	2 cut(s)	68, 122
BmgT120I	GGNCC	2 cut(s)	68, 122
BmiI	GGNNCC	2 cut(s)	33, 69
BmrFI	CCNGG	3 cut(s)	25, 39, 120
BpuMI	CCSGG	2 cut(s)	25, 39
Bsa29I	ATCGAT	1 cut(s)	104
BsaJI	CCNNGG	1 cut(s)	84
BsaWI	WCCGGW	1 cut(s)	165
Bsc4I	CCNNNNNNNGG	1 cut(s)	186
Bse118I	RCCGGY	2 cut(s)	165, 276
BseBI	CCWGG	1 cut(s)	120
BseCI	ATCGAT	1 cut(s)	104
BseDI	CCNNGG	1 cut(s)	84
BseGI	GGATG	1 cut(s)	361
BseLI	CCNNNNNNNGG	1 cut(s)	186
BseSI	GKGCMC	1 cut(s)	179
BseX3I	CGGCCG	1 cut(s)	278
BseXI	GCAGC	1 cut(s)	145
BsgI	GTGCAG	1 cut(s)	152
Bsh1285I	CGRYCG	2 cut(s)	104, 281
BshFI	GGCC	1 cut(s)	280
BshTI	ACCGGT	1 cut(s)	165
BshVI	ATCGAT	1 cut(s)	104
BsiEI	CGRYCG	2 cut(s)	104, 281
BsiSI	CCGG	5 cut(s)	24, 38, 109, 166, 277
BslI	CCNNNNNNNGG	1 cut(s)	186
BsmAI	GTCTC	1 cut(s)	250
BsmBI	CGTCTC	1 cut(s)	250
BsnI	GGCC	1 cut(s)	280
Bsp1286I	GDGCHC	1 cut(s)	179
Bsp143I	GATC	2 cut(s)	101, 105
BspACI	CCGC	1 cut(s)	187
BspANI	GGCC	1 cut(s)	280
BspDI	ATCGAT	1 cut(s)	104
BspLI	GGNNCC	2 cut(s)	33, 69
BspMAI	CTGCAG	1 cut(s)	294
BspPI	GGATC	1 cut(s)	100
BsrFI	RCCGGY	2 cut(s)	165, 276
BssAI	RCCGGY	2 cut(s)	165, 276
BssECI	CCNNGG	1 cut(s)	84
BssMI	GATC	2 cut(s)	101, 105
BssT1I	CCWWGG	1 cut(s)	84
Bst2UI	CCWGG	1 cut(s)	120
Bst4CI	ACNGT	1 cut(s)	142
Bst6I	CTCTTC	1 cut(s)	225
BstDEI	CTNAG	1 cut(s)	335
BstF5I	GGATG	1 cut(s)	361
BstKTI	GATC	2 cut(s)	104, 108
BstMAI	GTCTC	1 cut(s)	250
BstMBI	GATC	2 cut(s)	101, 105
BstMCI	CGRYCG	2 cut(s)	104, 281
BstMWI	GCNNNNNNNGC	1 cut(s)	142
BstNI	CCWGG	1 cut(s)	120
BstSCI	CCNGG	3 cut(s)	23, 37, 118
BstSFI	CTRYAG	1 cut(s)	290
BstSLI	GKGCMC	1 cut(s)	179
BstV1I	GCAGC	1 cut(s)	145
BstZI	CGGCCG	1 cut(s)	278
Bsu15I	ATCGAT	1 cut(s)	104
BsuRI	GGCC	1 cut(s)	280
BsuTUI	ATCGAT	1 cut(s)	104
BtsCI	GGATG	1 cut(s)	361
BtsIMutI	CAGTG	1 cut(s)	147
Cfr10I	RCCGGY	2 cut(s)	165, 276
Cfr13I	GGNCC	2 cut(s)	68, 122
ClaI	ATCGAT	1 cut(s)	104
CsiI	ACCWGGT	1 cut(s)	118
CspAI	ACCGGT	1 cut(s)	165
CviAII	CATG	2 cut(s)	64, 343
CviJI	RGCY	9 cut(s)	20, 77, 98, 112, 136, 280, 324, 361, 369
CviKI_1	RGCY	9 cut(s)	20, 77, 98, 112, 136, 280, 324, 361, 369
DdeI	CTNAG	1 cut(s)	335
DpnI	GATC	2 cut(s)	103, 107
DpnII	GATC	2 cut(s)	101, 105
DraI	TTTAAA	1 cut(s)	376
EaeI	YGGCCR	1 cut(s)	278
EagI	CGGCCG	1 cut(s)	278
Eam1104I	CTCTTC	1 cut(s)	225
EarI	CTCTTC	1 cut(s)	225
EclXI	CGGCCG	1 cut(s)	278
Eco130I	CCWWGG	1 cut(s)	84
Eco47I	GGWCC	2 cut(s)	68, 122
Eco52I	CGGCCG	1 cut(s)	278
EcoRII	CCWGG	1 cut(s)	118
EcoT14I	CCWWGG	1 cut(s)	84
ErhI	CCWWGG	1 cut(s)	84
Esp3I	CGTCTC	1 cut(s)	250
FaeI	CATG	2 cut(s)	67, 346
FaiI	YATR	6 cut(s)	14, 65, 207, 237, 270, 344
FatI	CATG	2 cut(s)	63, 342
Fnu4HI	GCNGC	1 cut(s)	134
FokI	GGATG	1 cut(s)	368
Fsp4HI	GCNGC	1 cut(s)	134
GluI	GCNGC	1 cut(s)	134
HaeIII	GGCC	1 cut(s)	280
HapII	CCGG	5 cut(s)	24, 38, 109, 166, 277
Hin1II	CATG	2 cut(s)	67, 346
HinfI	GANTC	1 cut(s)	47
HpaII	CCGG	5 cut(s)	24, 38, 109, 166, 277
Hpy188I	TCNGA	1 cut(s)	72
HpyAV	CCTTC	2 cut(s)	22, 346
HpyCH4III	ACNGT	1 cut(s)	142
HpyCH4V	TGCA	3 cut(s)	133, 292, 346
HpyF10VI	GCNNNNNNNGC	1 cut(s)	142
HpyF3I	CTNAG	1 cut(s)	335
Hsp92II	CATG	2 cut(s)	67, 346
Kzo9I	GATC	2 cut(s)	101, 105
Lsp1109I	GCAGC	1 cut(s)	145
MabI	ACCWGGT	1 cut(s)	118
MaeIII	GTNAC	1 cut(s)	272
MalI	GATC	2 cut(s)	103, 107
MboI	GATC	2 cut(s)	101, 105
MboII	GAAGA	5 cut(s)	17, 101, 104, 242, 274
MhlI	GDGCHC	1 cut(s)	179
MnlI	CCTC	4 cut(s)	45, 145, 193, 243
MseI	TTAA	1 cut(s)	375
MspA1I	CMGCKG	1 cut(s)	136
MspI	CCGG	5 cut(s)	24, 38, 109, 166, 277
MspR9I	CCNGG	3 cut(s)	25, 39, 120
MvaI	CCWGG	1 cut(s)	120
MwoI	GCNNNNNNNGC	1 cut(s)	142
NciI	CCSGG	2 cut(s)	25, 39
NdeII	GATC	2 cut(s)	101, 105
NlaIII	CATG	2 cut(s)	67, 346
NlaIV	GGNNCC	2 cut(s)	33, 69
PfeI	GAWTC	1 cut(s)	47
PfoI	TCCNGGA	1 cut(s)	37
PinAI	ACCGGT	1 cut(s)	165
PkrI	GCNGC	1 cut(s)	135
Ple19I	CGATCG	1 cut(s)	104
Psp6I	CCWGG	1 cut(s)	118
PspGI	CCWGG	1 cut(s)	118
PspN4I	GGNNCC	2 cut(s)	33, 69
PspPI	GGNCC	2 cut(s)	68, 122
PstI	CTGCAG	1 cut(s)	294
PvuI	CGATCG	1 cut(s)	104
PvuII	CAGCTG	1 cut(s)	136
SaqAI	TTAA	1 cut(s)	375
SatI	GCNGC	1 cut(s)	134
Sau3AI	GATC	2 cut(s)	101, 105
Sau96I	GGNCC	2 cut(s)	68, 122
ScrFI	CCNGG	3 cut(s)	25, 39, 120
SduI	GDGCHC	1 cut(s)	179
SetI	ASST	6 cut(s)	22, 33, 121, 138, 363, 371
SexAI	ACCWGGT	1 cut(s)	118
SfcI	CTRYAG	1 cut(s)	290
SinI	GGWCC	2 cut(s)	68, 122
SsiI	CCGC	1 cut(s)	187
StyD4I	CCNGG	3 cut(s)	23, 37, 118
StyI	CCWWGG	1 cut(s)	84
TaaI	ACNGT	1 cut(s)	142
TaqI	TCGA	1 cut(s)	104
TfiI	GAWTC	1 cut(s)	47
Tru1I	TTAA	1 cut(s)	375
Tru9I	TTAA	1 cut(s)	375
TscAI	CASTG	1 cut(s)	147
TseI	GCWGC	1 cut(s)	133
TspDTI	ATGAA	1 cut(s)	60
TspGWI	ACGGA	1 cut(s)	274
TspRI	CASTG	1 cut(s)	147
VpaK11BI	GGWCC	2 cut(s)	68, 122

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.