pycom04g14900

F-box LRR-repeat protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr4
OG0029264
Physical Location & Seq
Reverse (-)
17670926 .. 17671641
716 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom04g14900.3

Sequence Viewer

Length: 357 bp
ATGATGCTGGGATCGATCCCACTTGCTCACTTTTCCCAGAACCTTAGACAAATTAATTTGTCATATAGCTCAGTTACTGATGTGGGGCTGTTATCCTTAGCCAGTATCAGTTGCCTACAGAGCTTAACCATCTTGCACTTGAAGGGCTTGAGCCCTAATGGACTGGCAGCTGCCTTATTGGCCTGCGGGGGGCTAACTAAAGTAAAGCTCCAAACAACCTTCAAGTCATTGCTACCCAAAGCTCTTTTCGAACATTTAGAAGCACGTGGTTGTGTGTTTCAGTGGAGAGATAAATTCTTCAGGGCGGAATTGGACCCTCAATGTTGGAAAATACAGTTGGAAGATATCATGGCGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
LRR_6

Protein Analysis

119

Amino Acids

13.03

Weight (kDa)

8.8

Isoelectric Point (pI)

35.94

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0029264)

Species Orthologous Gene IDs
pyrus_communis pycom04g14900 pycom12g17070

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 2 cut(s) 186, 305
AclWI GGATC 2 cut(s) 10, 19
AcsI RAATTY 1 cut(s) 293
AcuI CTGAAG 1 cut(s) 283
AcvI CACGTG 1 cut(s) 266
AfiI CCNNNNNNNGG 1 cut(s) 189
AgsI TTSAA 2 cut(s) 142, 223
AjuI GAANNNNNNNTTGG 4 cut(s) 230, 262, 320, 352
AluBI AGCT 5 cut(s) 69, 123, 170, 208, 242
AluI AGCT 5 cut(s) 69, 123, 170, 208, 242
AlwI GGATC 2 cut(s) 10, 19
AlwNI CAGNNNCTG 1 cut(s) 77
AoxI GGCC 1 cut(s) 180
ApeKI GCWGC 2 cut(s) 167, 170
ApoI RAATTY 1 cut(s) 293
AseI ATTAAT 1 cut(s) 54
AspS9I GGNCC 1 cut(s) 313
AsuII TTCGAA 1 cut(s) 249
AvaII GGWCC 1 cut(s) 313
BanII GRGCYC 1 cut(s) 155
BbrPI CACGTG 1 cut(s) 266
BbvI GCAGC 2 cut(s) 157, 179
BccI CCATC 1 cut(s) 137
BfmI CTRYAG 1 cut(s) 116
BglI GCCNNNNNGGC 1 cut(s) 179
BisI GCNGC 2 cut(s) 168, 171
BlsI GCNGC 2 cut(s) 169, 172
Bme18I GGWCC 1 cut(s) 313
BmgT120I GGNCC 1 cut(s) 313
BmiI GGNNCC 1 cut(s) 315
Bpu10I CCTNAGC 1 cut(s) 97
Bpu14I TTCGAA 1 cut(s) 249
BpuEI CTTGAG 1 cut(s) 169
Bsa29I ATCGAT 1 cut(s) 14
BsaAI YACGTR 1 cut(s) 266
Bsc4I CCNNNNNNNGG 1 cut(s) 189
Bse1I ACTGG 2 cut(s) 102, 168
Bse3DI GCAATG 1 cut(s) 227
BseCI ATCGAT 1 cut(s) 14
BseLI CCNNNNNNNGG 1 cut(s) 189
BseMI GCAATG 1 cut(s) 227
BseMII CTCAG 1 cut(s) 84
BseNI ACTGG 2 cut(s) 102, 168
BseXI GCAGC 2 cut(s) 157, 179
BseYI CCCAGC 1 cut(s) 7
BshFI GGCC 1 cut(s) 182
BshVI ATCGAT 1 cut(s) 14
BslI CCNNNNNNNGG 1 cut(s) 189
BsnI GGCC 1 cut(s) 182
Bsp119I TTCGAA 1 cut(s) 249
Bsp1286I GDGCHC 1 cut(s) 155
Bsp143I GATC 2 cut(s) 11, 15
BspACI CCGC 2 cut(s) 186, 305
BspANI GGCC 1 cut(s) 182
BspCNI CTCAG 1 cut(s) 83
BspDI ATCGAT 1 cut(s) 14
BspLI GGNNCC 1 cut(s) 315
BspPI GGATC 2 cut(s) 10, 19
BspT104I TTCGAA 1 cut(s) 249
BsrDI GCAATG 1 cut(s) 227
BsrI ACTGG 2 cut(s) 102, 168
BssMI GATC 2 cut(s) 11, 15
Bst4CI ACNGT 1 cut(s) 336
BstBAI YACGTR 1 cut(s) 266
BstBI TTCGAA 1 cut(s) 249
BstC8I GCNNGC 1 cut(s) 184
BstDEI CTNAG 3 cut(s) 44, 70, 97
BstKTI GATC 2 cut(s) 14, 18
BstMBI GATC 2 cut(s) 11, 15
BstMWI GCNNNNNNNGC 2 cut(s) 120, 179
BstSFI CTRYAG 1 cut(s) 116
BstV1I GCAGC 2 cut(s) 157, 179
Bsu15I ATCGAT 1 cut(s) 14
BsuRI GGCC 1 cut(s) 182
BsuTUI ATCGAT 1 cut(s) 14
BtsIMutI CAGTG 1 cut(s) 287
Cac8I GCNNGC 1 cut(s) 184
CaiI CAGNNNCTG 1 cut(s) 77
Cfr13I GGNCC 1 cut(s) 313
ClaI ATCGAT 1 cut(s) 14
CviAII CATG 1 cut(s) 349
DdeI CTNAG 3 cut(s) 44, 70, 97
DpnI GATC 2 cut(s) 13, 17
DpnII GATC 2 cut(s) 11, 15
EciI GGCGGA 1 cut(s) 320
Eco24I GRGCYC 1 cut(s) 155
Eco32I GATATC 1 cut(s) 346
Eco47I GGWCC 1 cut(s) 313
Eco57I CTGAAG 1 cut(s) 283
Eco72I CACGTG 1 cut(s) 266
EcoRV GATATC 1 cut(s) 346
EcoT38I GRGCYC 1 cut(s) 155
FaeI CATG 1 cut(s) 352
FaiI YATR 3 cut(s) 64, 66, 350
FatI CATG 1 cut(s) 348
FauI CCCGC 1 cut(s) 179
Fnu4HI GCNGC 2 cut(s) 168, 171
FriOI GRGCYC 1 cut(s) 155
Fsp4HI GCNGC 2 cut(s) 168, 171
GluI GCNGC 2 cut(s) 168, 171
GsaI CCCAGC 1 cut(s) 11
HaeIII GGCC 1 cut(s) 182
Hin1II CATG 1 cut(s) 352
HpyAV CCTTC 2 cut(s) 136, 229
HpyCH4III ACNGT 1 cut(s) 336
HpyCH4IV ACGT 1 cut(s) 265
HpyCH4V TGCA 1 cut(s) 136
HpyF10VI GCNNNNNNNGC 2 cut(s) 120, 179
HpyF3I CTNAG 3 cut(s) 44, 70, 97
HpySE526I ACGT 1 cut(s) 265
Hsp92II CATG 1 cut(s) 352
Kzo9I GATC 2 cut(s) 11, 15
LmnI GCTCC 1 cut(s) 213
LpnPI CCDG 5 cut(s) 50, 115, 149, 196, 286
Lsp1109I GCAGC 2 cut(s) 157, 179
MaeII ACGT 1 cut(s) 265
MaeIII GTNAC 1 cut(s) 73
MalI GATC 2 cut(s) 13, 17
MboI GATC 2 cut(s) 11, 15
MboII GAAGA 2 cut(s) 289, 353
MhlI GDGCHC 1 cut(s) 155
MluCI AATT 4 cut(s) 51, 55, 293, 308
MmeI TCCRAC 2 cut(s) 305, 318
MnlI CCTC 1 cut(s) 327
MseI TTAA 2 cut(s) 54, 125
MspA1I CMGCKG 1 cut(s) 170
MwoI GCNNNNNNNGC 2 cut(s) 120, 179
NdeII GATC 2 cut(s) 11, 15
NlaIII CATG 1 cut(s) 352
NlaIV GGNNCC 1 cut(s) 315
NspV TTCGAA 1 cut(s) 249
PkrI GCNGC 2 cut(s) 169, 172
PmaCI CACGTG 1 cut(s) 266
PmlI CACGTG 1 cut(s) 266
Ppu21I YACGTR 1 cut(s) 266
PshBI ATTAAT 1 cut(s) 54
PspCI CACGTG 1 cut(s) 266
PspFI CCCAGC 1 cut(s) 7
PspN4I GGNNCC 1 cut(s) 315
PspPI GGNCC 1 cut(s) 313
PstNI CAGNNNCTG 1 cut(s) 77
PvuII CAGCTG 1 cut(s) 170
SaqAI TTAA 2 cut(s) 54, 125
SatI GCNGC 2 cut(s) 168, 171
Sau3AI GATC 2 cut(s) 11, 15
Sau96I GGNCC 1 cut(s) 313
SduI GDGCHC 1 cut(s) 155
SetI ASST 8 cut(s) 45, 71, 125, 172, 210, 221, 244, 268
SfcI CTRYAG 1 cut(s) 116
SfuI TTCGAA 1 cut(s) 249
SinI GGWCC 1 cut(s) 313
SmlI CTYRAG 1 cut(s) 148
SmoI CTYRAG 1 cut(s) 148
Sse9I AATT 4 cut(s) 51, 55, 293, 308
SsiI CCGC 2 cut(s) 186, 305
TaaI ACNGT 1 cut(s) 336
TaiI ACGT 1 cut(s) 268
TaqI TCGA 2 cut(s) 14, 249
TasI AATT 4 cut(s) 51, 55, 293, 308
Tru1I TTAA 2 cut(s) 54, 125
Tru9I TTAA 2 cut(s) 54, 125
TscAI CASTG 1 cut(s) 287
TseI GCWGC 2 cut(s) 167, 170
TspRI CASTG 1 cut(s) 287
VpaK11BI GGWCC 1 cut(s) 313
VspI ATTAAT 1 cut(s) 54
XapI RAATTY 1 cut(s) 293
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.