pycom04g14990

LURP-one-related

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr4
OG0028677
Physical Location & Seq
Forward (+)
17816129 .. 17817399
1271 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 678 bp
ATGAAACAAGCAGAACCTAGCGCACCATCGTTAGAATCTGCTAACCCGGATCCTGGATCGGCAGCGCATGCTAACCCCACCGTCCCGATCATCAGCCCTCACTTCTGCAGTCCTAACCCTGTGGTTATTGAAATAGTCAGAAAAGTTCTAACAATAACAGGTGACAAATTTGTAGTCACTGATGTCAATGGTAACATGATTTTTAAAGTTAAAGAAGCTCATTTCAGCTTTCATGATCACCGAGTCTTGCTTGATGCTGCCGGACATCCTATTATCACTCTAAGAAGGAAGTTCAACACTGCGCATGAAAGATGGCAAGTTTTCAGGGGGGATAGCAAAGACTCAAGGGATCTGATTTTCAGTGCTAAGAGATCTTCAATGTTCCAATTGAAGGCCAAGTTGGATGTTTTCTTGGCACAAAACATAACAGAGAATGTACCTGACTTCAGGGTCAAGGGAAATTGGTCTGAACGATCATGTGTCGTACATGCTGGGGACTCCTCAACCATGCTTGCCCAAATGCAGAAGAAGCACACAGTTACACCCCTATCATTTGGCAAGGACAATTTGACGGTGACAGTATATTCGGGGACTGACTACGCATTCATTGTCGCGCTTATTGCAATTTTTTGTGAGGTTAACACTCCTCGAGCTGGGGCCCACGCGTCGGGTGATTAG

Protein Analysis

226

Amino Acids

24.77

Weight (kDa)

8.78

Isoelectric Point (pI)

31.61

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
LOR PF04525 44 - 210 1.6e-46 LURP-one-related
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0028677)

Species Orthologous Gene IDs
malus_domestica MD04G1169200.v1.1
pyrus_communis pycom04g14990

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 449
Acc16I TGCGCA 1 cut(s) 303
AccII CGCG 2 cut(s) 614, 665
AclWI GGATC 4 cut(s) 44, 57, 64, 357
AcsI RAATTY 1 cut(s) 167
AcuI CTGAAG 1 cut(s) 430
AfaI GTAC 2 cut(s) 438, 486
AfiI CCNNNNNNNGG 4 cut(s) 53, 391, 653, 667
AflIII ACRYGT 1 cut(s) 663
AgsI TTSAA 4 cut(s) 131, 295, 378, 391
AjnI CCWGG 1 cut(s) 52
AjuI GAANNNNNNNTTGG 2 cut(s) 383, 415
AluBI AGCT 3 cut(s) 218, 228, 653
AluI AGCT 3 cut(s) 218, 228, 653
AlwI GGATC 4 cut(s) 44, 57, 64, 357
Ama87I CYCGRG 1 cut(s) 648
AoxI GGCC 2 cut(s) 393, 657
ApaI GGGCCC 1 cut(s) 661
ApeKI GCWGC 2 cut(s) 62, 257
ApoI RAATTY 1 cut(s) 167
ArsI GACNNNNNNTTYG 4 cut(s) 159, 191, 568, 600
AspLEI GCGC 4 cut(s) 23, 67, 304, 616
AspS9I GGNCC 2 cut(s) 657, 658
AsuC2I CCSGG 1 cut(s) 47
AsuHPI GGTGA 3 cut(s) 173, 230, 586
AvaI CYCGRG 1 cut(s) 648
BaeGI GKGCMC 1 cut(s) 661
BamHI GGATCC 1 cut(s) 49
BanII GRGCYC 1 cut(s) 661
BbvI GCAGC 2 cut(s) 74, 244
BccI CCATC 2 cut(s) 34, 306
BciT130I CCWGG 1 cut(s) 54
BclI TGATCA 1 cut(s) 235
BcnI CCSGG 1 cut(s) 47
BfaI CTAG 1 cut(s) 18
BfmI CTRYAG 1 cut(s) 106
BglII AGATCT 1 cut(s) 371
BisI GCNGC 2 cut(s) 63, 258
BlsI GCNGC 2 cut(s) 64, 259
Bme1390I CCNGG 2 cut(s) 47, 54
BmeT110I CYCGRG 1 cut(s) 648
BmgT120I GGNCC 2 cut(s) 657, 658
BmiI GGNNCC 3 cut(s) 51, 658, 659
BmrFI CCNGG 2 cut(s) 47, 54
BmsI GCATC 1 cut(s) 244
BpuEI CTTGAG 1 cut(s) 328
BpuMI CCSGG 1 cut(s) 47
Bsc4I CCNNNNNNNGG 4 cut(s) 53, 391, 653, 667
BseBI CCWGG 1 cut(s) 54
BseGI GGATG 2 cut(s) 265, 409
BseLI CCNNNNNNNGG 4 cut(s) 53, 391, 653, 667
BseRI GAGGAG 2 cut(s) 490, 636
BseSI GKGCMC 1 cut(s) 661
BseXI GCAGC 2 cut(s) 74, 244
BseYI CCCAGC 2 cut(s) 491, 653
Bsh1236I CGCG 2 cut(s) 614, 665
BshFI GGCC 2 cut(s) 395, 659
BsiHKCI CYCGRG 1 cut(s) 648
BsiSI CCGG 2 cut(s) 47, 261
BslFI GGGAC 3 cut(s) 68, 509, 604
BslI CCNNNNNNNGG 4 cut(s) 53, 391, 653, 667
BsmFI GGGAC 3 cut(s) 68, 509, 604
BsmI GAATGC 1 cut(s) 602
BsnI GGCC 2 cut(s) 395, 659
BsoBI CYCGRG 1 cut(s) 648
Bsp120I GGGCCC 1 cut(s) 657
Bsp1286I GDGCHC 1 cut(s) 661
Bsp143I GATC 7 cut(s) 49, 56, 87, 235, 349, 371, 473
BspANI GGCC 2 cut(s) 395, 659
BspFNI CGCG 2 cut(s) 614, 665
BspHI TCATGA 1 cut(s) 232
BspLI GGNNCC 3 cut(s) 51, 658, 659
BspMAI CTGCAG 1 cut(s) 110
BspPI GGATC 4 cut(s) 44, 57, 64, 357
BssMI GATC 7 cut(s) 49, 56, 87, 235, 349, 371, 473
Bst2UI CCWGG 1 cut(s) 54
Bst4CI ACNGT 4 cut(s) 82, 538, 574, 580
BstAPI GCANNNNNTGC 1 cut(s) 68
BstC8I GCNNGC 2 cut(s) 69, 513
BstDEI CTNAG 2 cut(s) 281, 366
BstF5I GGATG 2 cut(s) 265, 409
BstFNI CGCG 2 cut(s) 614, 665
BstHHI GCGC 4 cut(s) 23, 67, 304, 616
BstKTI GATC 7 cut(s) 52, 59, 90, 238, 352, 374, 476
BstMBI GATC 7 cut(s) 49, 56, 87, 235, 349, 371, 473
BstMWI GCNNNNNNNGC 3 cut(s) 68, 529, 620
BstNI CCWGG 1 cut(s) 54
BstNSI RCATGY 2 cut(s) 71, 491
BstSCI CCNGG 2 cut(s) 45, 52
BstSFI CTRYAG 1 cut(s) 106
BstSLI GKGCMC 1 cut(s) 661
BstUI CGCG 2 cut(s) 614, 665
BstV1I GCAGC 2 cut(s) 74, 244
BstX2I RGATCY 3 cut(s) 49, 349, 371
BstYI RGATCY 3 cut(s) 49, 349, 371
BsuRI GGCC 2 cut(s) 395, 659
BtsCI GGATG 2 cut(s) 265, 409
BtsI GCAGTG 1 cut(s) 297
BtsIMutI CAGTG 3 cut(s) 177, 297, 367
Cac8I GCNNGC 2 cut(s) 69, 513
CciI TCATGA 1 cut(s) 232
CfoI GCGC 4 cut(s) 23, 67, 304, 616
Cfr13I GGNCC 2 cut(s) 657, 658
CseI GACGC 1 cut(s) 654
Csp6I GTAC 2 cut(s) 437, 485
CviAII CATG 7 cut(s) 68, 196, 233, 305, 477, 488, 508
CviJI RGCY 6 cut(s) 96, 218, 228, 395, 653, 659
CviKI_1 RGCY 6 cut(s) 96, 218, 228, 395, 653, 659
CviQI GTAC 2 cut(s) 437, 485
DdeI CTNAG 2 cut(s) 281, 366
DpnI GATC 7 cut(s) 51, 58, 89, 237, 351, 373, 475
DpnII GATC 7 cut(s) 49, 56, 87, 235, 349, 371, 473
DraI TTTAAA 1 cut(s) 205
DrdI GACNNNNNNGTC 1 cut(s) 449
DseDI GACNNNNNNGTC 1 cut(s) 449
Eco24I GRGCYC 1 cut(s) 661
Eco57I CTGAAG 1 cut(s) 430
Eco88I CYCGRG 1 cut(s) 648
EcoO109I RGGNCCY 1 cut(s) 657
EcoRII CCWGG 1 cut(s) 52
EcoT38I GRGCYC 1 cut(s) 661
FaeI CATG 7 cut(s) 71, 199, 236, 308, 480, 491, 511
FaiI YATR 9 cut(s) 69, 197, 234, 306, 425, 478, 489, 509, 583
FaqI GGGAC 3 cut(s) 68, 509, 604
FatI CATG 7 cut(s) 67, 195, 232, 304, 476, 487, 507
FbaI TGATCA 1 cut(s) 235
Fnu4HI GCNGC 2 cut(s) 63, 258
FokI GGATG 2 cut(s) 252, 416
FriOI GRGCYC 1 cut(s) 661
Fsp4HI GCNGC 2 cut(s) 63, 258
FspBI CTAG 1 cut(s) 18
FspI TGCGCA 1 cut(s) 303
GlaI GCGC 4 cut(s) 22, 66, 303, 615
GluI GCNGC 2 cut(s) 63, 258
GsaI CCCAGC 2 cut(s) 495, 657
HaeIII GGCC 2 cut(s) 395, 659
HapII CCGG 2 cut(s) 47, 261
HgaI GACGC 1 cut(s) 654
HhaI GCGC 4 cut(s) 23, 67, 304, 616
Hin1II CATG 7 cut(s) 71, 199, 236, 308, 480, 491, 511
Hin6I GCGC 4 cut(s) 21, 65, 302, 614
HinP1I GCGC 4 cut(s) 21, 65, 302, 614
HincII GTYRAC 1 cut(s) 640
HindII GTYRAC 1 cut(s) 640
HinfI GANTC 4 cut(s) 35, 243, 341, 497
HpaI GTTAAC 1 cut(s) 640
HpaII CCGG 2 cut(s) 47, 261
HphI GGTGA 3 cut(s) 173, 230, 586
Hpy166II GTNNAC 1 cut(s) 640
Hpy188I TCNGA 3 cut(s) 140, 354, 469
Hpy188III TCNNGA 2 cut(s) 85, 233
Hpy8I GTNNAC 1 cut(s) 640
Hpy99I CGWCG 1 cut(s) 670
HpyAV CCTTC 2 cut(s) 279, 385
HpyCH4III ACNGT 4 cut(s) 82, 538, 574, 580
HpyCH4V TGCA 3 cut(s) 108, 523, 623
HpyF10VI GCNNNNNNNGC 3 cut(s) 68, 529, 620
HpyF3I CTNAG 2 cut(s) 281, 366
Hsp92II CATG 7 cut(s) 71, 199, 236, 308, 480, 491, 511
HspAI GCGC 4 cut(s) 21, 65, 302, 614
Ksp22I TGATCA 1 cut(s) 235
KspAI GTTAAC 1 cut(s) 640
Kzo9I GATC 7 cut(s) 49, 56, 87, 235, 349, 371, 473
Lsp1109I GCAGC 2 cut(s) 74, 244
LweI GCATC 1 cut(s) 244
MaeI CTAG 1 cut(s) 18
MaeIII GTNAC 5 cut(s) 161, 175, 191, 538, 574
MalI GATC 7 cut(s) 51, 58, 89, 237, 351, 373, 475
MboI GATC 7 cut(s) 49, 56, 87, 235, 349, 371, 473
MboII GAAGA 2 cut(s) 366, 538
MfeI CAATTG 1 cut(s) 386
MflI RGATCY 3 cut(s) 49, 349, 371
MhlI GDGCHC 1 cut(s) 661
MluCI AATT 5 cut(s) 167, 386, 460, 565, 624
MluI ACGCGT 1 cut(s) 663
MlyI GAGTC 3 cut(s) 252, 335, 491
MmeI TCCRAC 1 cut(s) 381
MnlI CCTC 4 cut(s) 108, 511, 628, 657
MseI TTAA 3 cut(s) 204, 210, 639
MspI CCGG 2 cut(s) 47, 261
MspR9I CCNGG 2 cut(s) 47, 54
MunI CAATTG 1 cut(s) 386
Mva1269I GAATGC 1 cut(s) 602
MvaI CCWGG 1 cut(s) 54
MvnI CGCG 2 cut(s) 614, 665
MwoI GCNNNNNNNGC 3 cut(s) 68, 529, 620
NciI CCSGG 1 cut(s) 47
NdeII GATC 7 cut(s) 49, 56, 87, 235, 349, 371, 473
NlaIII CATG 7 cut(s) 71, 199, 236, 308, 480, 491, 511
NlaIV GGNNCC 3 cut(s) 51, 658, 659
NmuCI GTSAC 3 cut(s) 161, 175, 574
NsbI TGCGCA 1 cut(s) 303
NspI RCATGY 2 cut(s) 71, 491
PaeI GCATGC 1 cut(s) 71
PaeR7I CTCGAG 1 cut(s) 648
PagI TCATGA 1 cut(s) 232
PctI GAATGC 1 cut(s) 602
PfeI GAWTC 1 cut(s) 35
PfoI TCCNGGA 1 cut(s) 52
PkrI GCNGC 2 cut(s) 64, 259
PleI GAGTC 3 cut(s) 251, 335, 491
PpsI GAGTC 3 cut(s) 251, 335, 491
Psp6I CCWGG 1 cut(s) 52
PspFI CCCAGC 2 cut(s) 491, 653
PspGI CCWGG 1 cut(s) 52
PspN4I GGNNCC 3 cut(s) 51, 658, 659
PspOMI GGGCCC 1 cut(s) 657
PspPI GGNCC 2 cut(s) 657, 658
PspXI VCTCGAGB 1 cut(s) 648
PstI CTGCAG 1 cut(s) 110
PsuI RGATCY 3 cut(s) 49, 349, 371
RsaI GTAC 2 cut(s) 438, 486
RsaNI GTAC 2 cut(s) 437, 485
SaqAI TTAA 3 cut(s) 204, 210, 639
SatI GCNGC 2 cut(s) 63, 258
Sau3AI GATC 7 cut(s) 49, 56, 87, 235, 349, 371, 473
Sau96I GGNCC 2 cut(s) 657, 658
SchI GAGTC 3 cut(s) 252, 335, 491
ScrFI CCNGG 2 cut(s) 47, 54
SduI GDGCHC 1 cut(s) 661
SetI ASST 7 cut(s) 19, 163, 220, 230, 442, 639, 655
SfaNI GCATC 1 cut(s) 244
SfcI CTRYAG 1 cut(s) 106
Sfr274I CTCGAG 1 cut(s) 648
SlaI CTCGAG 1 cut(s) 648
SmlI CTYRAG 2 cut(s) 343, 648
SmoI CTYRAG 2 cut(s) 343, 648
SphI GCATGC 1 cut(s) 71
Sse9I AATT 5 cut(s) 167, 386, 460, 565, 624
SspMI CTAG 1 cut(s) 18
StyD4I CCNGG 2 cut(s) 45, 52
TaaI ACNGT 4 cut(s) 82, 538, 574, 580
TaqI TCGA 1 cut(s) 649
TasI AATT 5 cut(s) 167, 386, 460, 565, 624
TfiI GAWTC 1 cut(s) 35
Tru1I TTAA 3 cut(s) 204, 210, 639
Tru9I TTAA 3 cut(s) 204, 210, 639
TscAI CASTG 3 cut(s) 184, 304, 367
TseFI GTSAC 3 cut(s) 161, 175, 574
TseI GCWGC 2 cut(s) 62, 257
Tsp45I GTSAC 3 cut(s) 161, 175, 574
TspDTI ATGAA 4 cut(s) 17, 221, 321, 595
TspRI CASTG 3 cut(s) 184, 304, 367
XapI RAATTY 1 cut(s) 167
XceI RCATGY 2 cut(s) 71, 491
XhoI CTCGAG 1 cut(s) 648
XspI CTAG 1 cut(s) 18
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.