pycom04g16100

Belongs to the glycosyltransferase 8 family

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr4
Physical Location & Seq
Reverse (-)
18830720 .. 18832620
1901 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 486 bp
ATGGCTTTCACCCGCCCGGTACCAGAACAACGAAATTCGCCTTCAATTGGAGGATATGGTACAAAAATCATCATAAATGCTTCTAATCTGTTAGGGGGGGGTGGTTCGAAGCATGTAGATGATTTCGTGAAAAATTTCACACCAACCCTTTCAAAGGTTTATTTTCCGTTGTTTTGCAAGAAACCAGAGCCTTTCCATGCTCAAGAGTTCCACAGGTATGTCACCGCTCTTTTACATATTTCTGCTTTGATTTCCAATACGAGGTTAAAGCCTTTGATTTCCAACAAATTTGAGTTAGGTAATTTGATTTCCCTCAAAGGACATAAATTATGTGTTTTCTTTAATCATTTTGTTATAATATTCAACCCATTTCAATTTGTTACCAACCGAATCCTAATTTGTTCAATTTCTTTTCATCTGGCAATTGAGTGTGGTTGTTTGCCGTTCTCTTTGAGAAATTACAAGCTATGCTACAATCCCAGTTAG

Protein Analysis

162

Amino Acids

18.19

Weight (kDa)

9.56

Isoelectric Point (pI)

35.82

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0028702)

Species Orthologous Gene IDs
malus_domestica MD04G1182700.v1.1
pyrus_communis pycom04g16100

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 356
Acc65I GGTACC 1 cut(s) 19
AccB1I GGYRCC 1 cut(s) 19
AccBSI CCGCTC 1 cut(s) 227
AciI CCGC 2 cut(s) 13, 225
AcsI RAATTY 3 cut(s) 34, 133, 287
AfaI GTAC 2 cut(s) 21, 61
AfiI CCNNNNNNNGG 3 cut(s) 47, 154, 261
AgsI TTSAA 5 cut(s) 45, 153, 364, 374, 405
AluBI AGCT 1 cut(s) 466
AluI AGCT 1 cut(s) 466
ApoI RAATTY 3 cut(s) 34, 133, 287
Asp700I GAANNNNTTC 1 cut(s) 134
Asp718I GGTACC 1 cut(s) 19
AsuC2I CCSGG 1 cut(s) 17
AsuHPI GGTGA 1 cut(s) 214
AsuII TTCGAA 1 cut(s) 107
BanI GGYRCC 1 cut(s) 19
BceAI ACGGC 1 cut(s) 427
BcnI CCSGG 1 cut(s) 17
Bme1390I CCNGG 1 cut(s) 17
BmiI GGNNCC 1 cut(s) 21
BmrFI CCNGG 1 cut(s) 17
BmrI ACTGGG 1 cut(s) 474
BmuI ACTGGG 1 cut(s) 474
Bpu14I TTCGAA 1 cut(s) 107
BpuEI CTTGAG 1 cut(s) 186
BpuMI CCSGG 1 cut(s) 17
Bsc4I CCNNNNNNNGG 3 cut(s) 47, 154, 261
Bse1I ACTGG 1 cut(s) 480
BseLI CCNNNNNNNGG 3 cut(s) 47, 154, 261
BseNI ACTGG 1 cut(s) 480
BshNI GGYRCC 1 cut(s) 19
BsiSI CCGG 1 cut(s) 17
BslI CCNNNNNNNGG 3 cut(s) 47, 154, 261
Bsp119I TTCGAA 1 cut(s) 107
BspACI CCGC 2 cut(s) 13, 225
BspLI GGNNCC 1 cut(s) 21
BspT104I TTCGAA 1 cut(s) 107
BspT107I GGYRCC 1 cut(s) 19
BsrBI CCGCTC 1 cut(s) 227
BsrI ACTGG 1 cut(s) 480
BstBI TTCGAA 1 cut(s) 107
BstENI CCTNNNNNAGG 1 cut(s) 152
BstNSI RCATGY 1 cut(s) 116
BstSCI CCNGG 1 cut(s) 15
Csp6I GTAC 2 cut(s) 20, 60
CviAII CATG 2 cut(s) 113, 197
CviJI RGCY 4 cut(s) 5, 190, 271, 466
CviKI_1 RGCY 4 cut(s) 5, 190, 271, 466
CviQI GTAC 2 cut(s) 20, 60
EcoNI CCTNNNNNAGG 1 cut(s) 152
FaeI CATG 2 cut(s) 116, 200
FatI CATG 2 cut(s) 112, 196
FauI CCCGC 1 cut(s) 20
HapII CCGG 1 cut(s) 17
Hin1II CATG 2 cut(s) 116, 200
HinfI GANTC 1 cut(s) 390
HpaII CCGG 1 cut(s) 17
HphI GGTGA 1 cut(s) 214
Hpy188III TCNNGA 2 cut(s) 127, 203
HpyAV CCTTC 1 cut(s) 51
HpyCH4V TGCA 1 cut(s) 177
Hsp92II CATG 2 cut(s) 116, 200
KpnI GGTACC 1 cut(s) 23
LpnPI CCDG 5 cut(s) 30, 36, 198, 199, 404
MaeIII GTNAC 2 cut(s) 220, 379
MbiI CCGCTC 1 cut(s) 227
MfeI CAATTG 2 cut(s) 45, 423
MmeI TCCRAC 1 cut(s) 306
MnlI CCTC 3 cut(s) 44, 255, 323
MroXI GAANNNNTTC 1 cut(s) 134
MseI TTAA 2 cut(s) 266, 342
MslI CAYNNNNRTG 2 cut(s) 117, 216
MspI CCGG 1 cut(s) 17
MspR9I CCNGG 1 cut(s) 17
MunI CAATTG 2 cut(s) 45, 423
NciI CCSGG 1 cut(s) 17
NlaIII CATG 2 cut(s) 116, 200
NlaIV GGNNCC 1 cut(s) 21
NmuCI GTSAC 1 cut(s) 220
NspI RCATGY 1 cut(s) 116
NspV TTCGAA 1 cut(s) 107
PdmI GAANNNNTTC 1 cut(s) 134
PfeI GAWTC 1 cut(s) 390
PsiI TTATAA 1 cut(s) 356
PspN4I GGNNCC 1 cut(s) 21
RsaI GTAC 2 cut(s) 21, 61
RsaNI GTAC 2 cut(s) 20, 60
RseI CAYNNNNRTG 2 cut(s) 117, 216
SaqAI TTAA 2 cut(s) 266, 342
ScrFI CCNGG 1 cut(s) 17
SetI ASST 5 cut(s) 159, 218, 266, 301, 468
SfuI TTCGAA 1 cut(s) 107
SmiMI CAYNNNNRTG 2 cut(s) 117, 216
SmlI CTYRAG 1 cut(s) 201
SmoI CTYRAG 1 cut(s) 201
SsiI CCGC 2 cut(s) 13, 225
SspI AATATT 1 cut(s) 360
StyD4I CCNGG 1 cut(s) 15
TaqI TCGA 1 cut(s) 107
TfiI GAWTC 1 cut(s) 390
Tru1I TTAA 2 cut(s) 266, 342
Tru9I TTAA 2 cut(s) 266, 342
TseFI GTSAC 1 cut(s) 220
Tsp45I GTSAC 1 cut(s) 220
TspDTI ATGAA 1 cut(s) 404
TspGWI ACGGA 1 cut(s) 156
XagI CCTNNNNNAGG 1 cut(s) 152
XapI RAATTY 3 cut(s) 34, 133, 287
XceI RCATGY 1 cut(s) 116
XmnI GAANNNNTTC 1 cut(s) 134
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.