Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr4

Orthogroup ID

OG0028701

Physical Location & Seq

Genomic Coordinates Forward (+)

20100135 .. 20101132

Gene Structure 998 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 627 bp

ATGGATCAATCACGTTTGACGCTTGGGAATGGTGAGGACAATGTCGGAATTCCAGATGATTTGCGATGCAAGAGGTCAGATGGAAAACAGTGGAGGTGCACTGCCATGTCTATGCCAGATAAAACGGTATGTGAAAAATATTACATCCAGGCAAAGAAAAGGGCAGCTAATTGTGCAATGCGGGCGAATTTGAAAAAAGCCAAGAGGAGGTCATTAGGTGAAAGTGATATTTTCTTGGAGAGCAAGAGTGATGATCTTGGTGTACCACTTGCAAGTGTGAAGTCACAAGAGAGAAAGTACATGGAGAAGGTATCAAAAAATCATTTTCGTTATTCACTTGAGAGACCACCCATGAAGGGTTCATCCGTGCGTAATCCTTCAAAATTGATGGACAAGATAGATTTGGAGGAGTATGAAGAAAATTGGAGATCAAGTAGTAATAAGTCACCGCCTGCTTCTGCTTTGGACTCATCCAGGAACAGACCACAGAAGAGTTTTGATGTTAATGCTATGACAGTTTCGGAAGACTCTGATGGAAGCTCAGAATCCTCTGAAGAAACTGGTGGCCAAACTTGCCATCAGTGTCAGAGGAATGACAGAGAGAGTCATTTGGTGCCTCAAATGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000785 GO:0000976 GO:0001067 GO:0003674 GO:0003676 GO:0003677 GO:0003682 GO:0003690 GO:0003824 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005694 GO:0006325 GO:0006355 GO:0006464 GO:0006482 GO:0006807 GO:0006996 GO:0008150 GO:0008152 GO:0008214 GO:0009889 GO:0009987 GO:0010468 GO:0010556 GO:0016043 GO:0016569 GO:0016570 GO:0016577 GO:0019219 GO:0019222 GO:0019538 GO:0031323 GO:0031326 GO:0031490 GO:0031974 GO:0031981 GO:0032451 GO:0032452 GO:0032454 GO:0033169 GO:0036211 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0043412 GO:0043565 GO:0044212 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044422 GO:0044424 GO:0044427 GO:0044428 GO:0044446 GO:0044464 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0051276 GO:0060255 GO:0065007 GO:0070013 GO:0070076 GO:0070988 GO:0071704 GO:0071840 GO:0080090 GO:0097159 GO:0140096 GO:1901363 GO:1901564 GO:1903506 GO:1990837 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

ko03010 ko04714 map03010 map04714

Pfam Domains

Protein Families

JmjC WRC zf-4CXXC_R1

Protein Analysis

209

Amino Acids

23.54

Weight (kDa)

8.68

Isoelectric Point (pI)

66.31

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
WRC	PF08879	18 - 55	2.8e-12	WRC

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0028701)

Species	Orthologous Gene IDs
malus_domestica	MD04G1202700.v1.1
pyrus_communis	pycom04g17880

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	613
AciI	CCGC	2 cut(s)	181, 449
AclWI	GGATC	1 cut(s)	12
AcoI	YGGCCR	1 cut(s)	565
AcsI	RAATTY	2 cut(s)	48, 187
AcuI	CTGAAG	1 cut(s)	573
AfaI	GTAC	2 cut(s)	264, 299
AfiI	CCNNNNNNNGG	2 cut(s)	207, 356
AgsI	TTSAA	2 cut(s)	193, 381
AjnI	CCWGG	2 cut(s)	147, 473
AluBI	AGCT	2 cut(s)	167, 540
AluI	AGCT	2 cut(s)	167, 540
Alw21I	GWGCWC	1 cut(s)	101
Alw26I	GTCTC	1 cut(s)	337
Alw44I	GTGCAC	1 cut(s)	97
AlwI	GGATC	1 cut(s)	12
AoxI	GGCC	1 cut(s)	565
ApaLI	GTGCAC	1 cut(s)	97
ApeKI	GCWGC	1 cut(s)	164
ApoI	RAATTY	2 cut(s)	48, 187
AsuHPI	GGTGA	3 cut(s)	44, 230, 438
BaeGI	GKGCMC	1 cut(s)	101
BalI	TGGCCA	1 cut(s)	567
BanI	GGYRCC	1 cut(s)	613
BbsI	GAAGAC	1 cut(s)	531
Bbv12I	GWGCWC	1 cut(s)	101
BbvI	GCAGC	1 cut(s)	176
BccI	CCATC	4 cut(s)	74, 382, 527, 585
BciT130I	CCWGG	2 cut(s)	149, 475
BcoDI	GTCTC	1 cut(s)	337
BisI	GCNGC	1 cut(s)	165
BlsI	GCNGC	1 cut(s)	166
Bme1390I	CCNGG	2 cut(s)	149, 475
BmiI	GGNNCC	1 cut(s)	615
BmrFI	CCNGG	2 cut(s)	149, 475
BmsI	GCATC	1 cut(s)	56
BpiI	GAAGAC	1 cut(s)	531
BpuEI	CTTGAG	1 cut(s)	359
BsaI	GGTCTC	1 cut(s)	337
BsaXI	ACNNNNNCTCC	2 cut(s)	418, 448
Bsc4I	CCNNNNNNNGG	2 cut(s)	207, 356
Bse1I	ACTGG	1 cut(s)	565
Bse3DI	GCAATG	1 cut(s)	183
BseBI	CCWGG	2 cut(s)	149, 475
BseGI	GGATG	3 cut(s)	144, 362, 470
BseLI	CCNNNNNNNGG	2 cut(s)	207, 356
BseMI	GCAATG	1 cut(s)	183
BseMII	CTCAG	1 cut(s)	555
BseNI	ACTGG	1 cut(s)	565
BseRI	GAGGAG	2 cut(s)	220, 422
BseSI	GKGCMC	1 cut(s)	101
BseXI	GCAGC	1 cut(s)	176
BshFI	GGCC	1 cut(s)	567
BshNI	GGYRCC	1 cut(s)	613
BsiHKAI	GWGCWC	1 cut(s)	101
BslI	CCNNNNNNNGG	2 cut(s)	207, 356
BsmAI	GTCTC	1 cut(s)	337
BsnI	GGCC	1 cut(s)	567
Bso31I	GGTCTC	1 cut(s)	337
Bsp1286I	GDGCHC	1 cut(s)	101
Bsp143I	GATC	3 cut(s)	4, 253, 428
BspACI	CCGC	2 cut(s)	181, 449
BspANI	GGCC	1 cut(s)	567
BspCNI	CTCAG	1 cut(s)	554
BspLI	GGNNCC	1 cut(s)	615
BspPI	GGATC	1 cut(s)	12
BspT107I	GGYRCC	1 cut(s)	613
BspTNI	GGTCTC	1 cut(s)	337
BsrDI	GCAATG	1 cut(s)	183
BsrI	ACTGG	1 cut(s)	565
BssMI	GATC	3 cut(s)	4, 253, 428
Bst2UI	CCWGG	2 cut(s)	149, 475
Bst4CI	ACNGT	3 cut(s)	90, 127, 517
Bst6I	CTCTTC	1 cut(s)	485
BstC8I	GCNNGC	2 cut(s)	183, 453
BstDEI	CTNAG	1 cut(s)	541
BstF5I	GGATG	3 cut(s)	144, 362, 470
BstKTI	GATC	3 cut(s)	7, 256, 431
BstMAI	GTCTC	1 cut(s)	337
BstMBI	GATC	3 cut(s)	4, 253, 428
BstMWI	GCNNNNNNNGC	3 cut(s)	173, 182, 573
BstNI	CCWGG	2 cut(s)	149, 475
BstSCI	CCNGG	2 cut(s)	147, 473
BstSLI	GKGCMC	1 cut(s)	101
BstV1I	GCAGC	1 cut(s)	176
BstV2I	GAAGAC	1 cut(s)	531
BsuRI	GGCC	1 cut(s)	567
BtgZI	GCGATG	1 cut(s)	79
BtsCI	GGATG	3 cut(s)	144, 362, 470
BtsI	GCAGTG	1 cut(s)	99
BtsIMutI	CAGTG	3 cut(s)	95, 99, 587
Cac8I	GCNNGC	2 cut(s)	183, 453
CseI	GACGC	1 cut(s)	28
Csp6I	GTAC	2 cut(s)	263, 298
CviAII	CATG	3 cut(s)	106, 301, 352
CviJI	RGCY	4 cut(s)	167, 200, 540, 567
CviKI_1	RGCY	4 cut(s)	167, 200, 540, 567
CviQI	GTAC	2 cut(s)	263, 298
DdeI	CTNAG	1 cut(s)	541
DpnI	GATC	3 cut(s)	6, 255, 430
DpnII	GATC	3 cut(s)	4, 253, 428
EaeI	YGGCCR	1 cut(s)	565
Eam1104I	CTCTTC	1 cut(s)	485
EarI	CTCTTC	1 cut(s)	485
Eco31I	GGTCTC	1 cut(s)	337
Eco57I	CTGAAG	1 cut(s)	573
EcoRI	GAATTC	1 cut(s)	48
EcoRII	CCWGG	2 cut(s)	147, 473
FaeI	CATG	3 cut(s)	109, 304, 355
FaiI	YATR	7 cut(s)	107, 113, 130, 302, 353, 414, 512
FatI	CATG	3 cut(s)	105, 300, 351
FauI	CCCGC	1 cut(s)	174
Fnu4HI	GCNGC	1 cut(s)	165
FokI	GGATG	3 cut(s)	131, 349, 457
Fsp4HI	GCNGC	1 cut(s)	165
GluI	GCNGC	1 cut(s)	165
HaeIII	GGCC	1 cut(s)	567
HgaI	GACGC	1 cut(s)	28
Hin1II	CATG	3 cut(s)	109, 304, 355
HinfI	GANTC	4 cut(s)	467, 527, 545, 604
HphI	GGTGA	3 cut(s)	44, 230, 438
Hpy166II	GTNNAC	2 cut(s)	99, 263
Hpy188I	TCNGA	7 cut(s)	47, 79, 523, 532, 544, 553, 588
Hpy188III	TCNNGA	1 cut(s)	53
Hpy8I	GTNNAC	2 cut(s)	99, 263
HpyAV	CCTTC	3 cut(s)	301, 349, 387
HpyCH4III	ACNGT	3 cut(s)	90, 127, 517
HpyCH4IV	ACGT	1 cut(s)	13
HpyCH4V	TGCA	4 cut(s)	69, 99, 176, 272
HpyF10VI	GCNNNNNNNGC	3 cut(s)	173, 182, 573
HpyF3I	CTNAG	1 cut(s)	541
HpySE526I	ACGT	1 cut(s)	13
Hsp92II	CATG	3 cut(s)	109, 304, 355
Kzo9I	GATC	3 cut(s)	4, 253, 428
LpnPI	CCDG	8 cut(s)	66, 129, 134, 161, 460, 465, 487, 546
Lsp1109I	GCAGC	1 cut(s)	176
LweI	GCATC	1 cut(s)	56
MaeII	ACGT	1 cut(s)	13
MaeIII	GTNAC	2 cut(s)	282, 444
MalI	GATC	3 cut(s)	6, 255, 430
MboI	GATC	3 cut(s)	4, 253, 428
MboII	GAAGA	4 cut(s)	428, 502, 536, 566
MhlI	GDGCHC	1 cut(s)	101
MlsI	TGGCCA	1 cut(s)	567
MluCI	AATT	5 cut(s)	48, 169, 187, 383, 421
MluNI	TGGCCA	1 cut(s)	567
MlyI	GAGTC	3 cut(s)	461, 521, 613
MmeI	TCCRAC	1 cut(s)	25
MnlI	CCTC	9 cut(s)	28, 66, 87, 198, 201, 400, 559, 582, 627
Mox20I	TGGCCA	1 cut(s)	567
MscI	TGGCCA	1 cut(s)	567
MseI	TTAA	1 cut(s)	504
MslI	CAYNNNNRTG	2 cut(s)	104, 110
Msp20I	TGGCCA	1 cut(s)	567
MspR9I	CCNGG	2 cut(s)	149, 475
MvaI	CCWGG	2 cut(s)	149, 475
MwoI	GCNNNNNNNGC	3 cut(s)	173, 182, 573
NdeII	GATC	3 cut(s)	4, 253, 428
NlaIII	CATG	3 cut(s)	109, 304, 355
NlaIV	GGNNCC	1 cut(s)	615
NmuCI	GTSAC	2 cut(s)	282, 444
PfeI	GAWTC	1 cut(s)	545
PflFI	GACNNNGTC	1 cut(s)	41
PfoI	TCCNGGA	1 cut(s)	473
PkrI	GCNGC	1 cut(s)	166
PleI	GAGTC	3 cut(s)	461, 521, 612
PpsI	GAGTC	3 cut(s)	461, 521, 612
Psp6I	CCWGG	2 cut(s)	147, 473
PspGI	CCWGG	2 cut(s)	147, 473
PspN4I	GGNNCC	1 cut(s)	615
PsyI	GACNNNGTC	1 cut(s)	41
RsaI	GTAC	2 cut(s)	264, 299
RsaNI	GTAC	2 cut(s)	263, 298
RseI	CAYNNNNRTG	2 cut(s)	104, 110
SaqAI	TTAA	1 cut(s)	504
SatI	GCNGC	1 cut(s)	165
Sau3AI	GATC	3 cut(s)	4, 253, 428
SchI	GAGTC	3 cut(s)	461, 521, 613
ScrFI	CCNGG	2 cut(s)	149, 475
SduI	GDGCHC	1 cut(s)	101
SetI	ASST	8 cut(s)	16, 77, 98, 169, 212, 220, 312, 542
SfaNI	GCATC	1 cut(s)	56
SmiMI	CAYNNNNRTG	2 cut(s)	104, 110
SmlI	CTYRAG	1 cut(s)	338
SmoI	CTYRAG	1 cut(s)	338
Sse9I	AATT	5 cut(s)	48, 169, 187, 383, 421
SsiI	CCGC	2 cut(s)	181, 449
SspI	AATATT	1 cut(s)	140
StyD4I	CCNGG	2 cut(s)	147, 473
TaaI	ACNGT	3 cut(s)	90, 127, 517
TaiI	ACGT	1 cut(s)	16
TasI	AATT	5 cut(s)	48, 169, 187, 383, 421
TatI	WGTACW	1 cut(s)	297
TfiI	GAWTC	1 cut(s)	545
Tru1I	TTAA	1 cut(s)	504
Tru9I	TTAA	1 cut(s)	504
TscAI	CASTG	3 cut(s)	95, 106, 587
TseFI	GTSAC	2 cut(s)	282, 444
TseI	GCWGC	1 cut(s)	164
Tsp45I	GTSAC	2 cut(s)	282, 444
TspDTI	ATGAA	3 cut(s)	351, 368, 429
TspGWI	ACGGA	1 cut(s)	355
TspRI	CASTG	3 cut(s)	95, 106, 587
Tth111I	GACNNNGTC	1 cut(s)	41
VneI	GTGCAC	1 cut(s)	97
XapI	RAATTY	2 cut(s)	48, 187

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.