pycom04g21740

Exosome component 10-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr4
OG0029265
Physical Location & Seq
Reverse (-)
22762977 .. 22763255
279 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom04g21740.1

Sequence Viewer

Length: 279 bp
ATGAGTTCTCATTGCAGCTTATTTTGTGTATCAAGTATTTTGGGTTTTGAAGATGAGTTTGTTAGCATTGTTTCCGGTTTTTGTGAGTGGAGGATGTTGTTGCCCGTGCAGAGGATGAAAGTACTAGTTATATATTACCAAACAAATGGATCTGAACTTCTGTTACCTGGTCAGTCTGTCAGCAATTCGACTAATGGTGATTTATCTATAGTTTCACCCAATCTTAACAGTATAAAATGGAGTATGAGGGGTTTGCATTTTGTGCCTCTGAACTTGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000175 GO:0000178 GO:0000460 GO:0000785 GO:0000956 GO:0003674 GO:0003824 GO:0004518 GO:0004527 GO:0004532 GO:0004540 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005694 GO:0005730 GO:0005737 GO:0005829 GO:0006139 GO:0006259 GO:0006304 GO:0006305 GO:0006306 GO:0006364 GO:0006396 GO:0006401 GO:0006402 GO:0006403 GO:0006725 GO:0006807 GO:0007549 GO:0008150 GO:0008152 GO:0008298 GO:0008334 GO:0008408 GO:0009048 GO:0009056 GO:0009057 GO:0009889 GO:0009890 GO:0009892 GO:0009893 GO:0009987 GO:0010467 GO:0010468 GO:0010556 GO:0010558 GO:0010604 GO:0010605 GO:0010629 GO:0010638 GO:0010639 GO:0016070 GO:0016071 GO:0016072 GO:0016075 GO:0016458 GO:0016787 GO:0016788 GO:0016796 GO:0016896 GO:0019219 GO:0019222 GO:0019439 GO:0022613 GO:0031047 GO:0031056 GO:0031058 GO:0031060 GO:0031062 GO:0031323 GO:0031324 GO:0031325 GO:0031326 GO:0031327 GO:0031399 GO:0031401 GO:0031974 GO:0031981 GO:0032204 GO:0032205 GO:0032210 GO:0032211 GO:0032259 GO:0032268 GO:0032270 GO:0032879 GO:0032991 GO:0033036 GO:0033043 GO:0033044 GO:0034470 GO:0034641 GO:0034655 GO:0034660 GO:0034661 GO:0035327 GO:0040029 GO:0042254 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0043412 GO:0043414 GO:0043632 GO:0043633 GO:0043634 GO:0044085 GO:0044237 GO:0044238 GO:0044248 GO:0044260 GO:0044265 GO:0044270 GO:0044422 GO:0044424 GO:0044427 GO:0044428 GO:0044444 GO:0044446 GO:0044464 GO:0044728 GO:0045934 GO:0046483 GO:0046700 GO:0048518 GO:0048519 GO:0048522 GO:0048523 GO:0050789 GO:0050794 GO:0051052 GO:0051053 GO:0051128 GO:0051129 GO:0051130 GO:0051171 GO:0051172 GO:0051173 GO:0051179 GO:0051246 GO:0051247 GO:0051641 GO:0060255 GO:0061085 GO:0061087 GO:0065007 GO:0065008 GO:0070013 GO:0070727 GO:0071025 GO:0071027 GO:0071028 GO:0071029 GO:0071030 GO:0071033 GO:0071034 GO:0071035 GO:0071043 GO:0071044 GO:0071046 GO:0071048 GO:0071704 GO:0071840 GO:0080090 GO:0080188 GO:0090304 GO:0090305 GO:0090501 GO:0090503 GO:0140098 GO:1901360 GO:1901361 GO:1901575 GO:1902275 GO:1902464 GO:1902466 GO:1902494 GO:1904356 GO:1904357 GO:1904872 GO:1905269 GO:1905354 GO:2000112 GO:2000113 GO:2000278 GO:2000279 GO:2001251 GO:2001252
KEGG Pathways
Metabolic & Signaling
ko03018 map03018
Pfam Domains
Protein Families
DNA_pol_A_exo1 HRDC PMC2NT

Protein Analysis

93

Amino Acids

10.27

Weight (kDa)

6.01

Isoelectric Point (pI)

28.85

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0029265)

Species Orthologous Gene IDs
pyrus_communis pycom04g21740 pycom16g15690

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AclWI GGATC 1 cut(s) 157
AfaI GTAC 1 cut(s) 123
AfiI CCNNNNNNNGG 1 cut(s) 111
AgsI TTSAA 1 cut(s) 50
AhlI ACTAGT 1 cut(s) 124
AjnI CCWGG 1 cut(s) 166
AluBI AGCT 1 cut(s) 18
AluI AGCT 1 cut(s) 18
AlwI GGATC 1 cut(s) 157
ApeKI GCWGC 1 cut(s) 15
AsuHPI GGTGA 2 cut(s) 207, 209
BbvI GCAGC 1 cut(s) 27
BciT130I CCWGG 1 cut(s) 168
BcuI ACTAGT 1 cut(s) 124
BfaI CTAG 1 cut(s) 125
BfmI CTRYAG 1 cut(s) 207
BisI GCNGC 1 cut(s) 16
BlsI GCNGC 1 cut(s) 17
BmcAI AGTACT 1 cut(s) 123
Bme1390I CCNGG 1 cut(s) 168
BmrFI CCNGG 1 cut(s) 168
BsaWI WCCGGW 1 cut(s) 74
Bsc4I CCNNNNNNNGG 1 cut(s) 111
Bse3DI GCAATG 1 cut(s) 10
BseBI CCWGG 1 cut(s) 168
BseGI GGATG 2 cut(s) 99, 120
BseLI CCNNNNNNNGG 1 cut(s) 111
BseMI GCAATG 1 cut(s) 10
BseXI GCAGC 1 cut(s) 27
BsgI GTGCAG 1 cut(s) 128
BsiSI CCGG 1 cut(s) 75
BslI CCNNNNNNNGG 1 cut(s) 111
Bsp143I GATC 1 cut(s) 149
BspPI GGATC 1 cut(s) 157
BsrDI GCAATG 1 cut(s) 10
BssMI GATC 1 cut(s) 149
Bst2UI CCWGG 1 cut(s) 168
Bst4CI ACNGT 1 cut(s) 230
BstAPI GCANNNNNTGC 1 cut(s) 262
BstF5I GGATG 2 cut(s) 99, 120
BstKTI GATC 1 cut(s) 152
BstMBI GATC 1 cut(s) 149
BstMWI GCNNNNNNNGC 1 cut(s) 262
BstNI CCWGG 1 cut(s) 168
BstSCI CCNGG 1 cut(s) 166
BstSFI CTRYAG 1 cut(s) 207
BstV1I GCAGC 1 cut(s) 27
BstX2I RGATCY 1 cut(s) 149
BstXI CCANNNNNNTGG 1 cut(s) 146
BstYI RGATCY 1 cut(s) 149
BtsCI GGATG 2 cut(s) 99, 120
CsiI ACCWGGT 1 cut(s) 166
Csp6I GTAC 1 cut(s) 122
CviJI RGCY 1 cut(s) 18
CviKI_1 RGCY 1 cut(s) 18
CviQI GTAC 1 cut(s) 122
DpnI GATC 1 cut(s) 151
DpnII GATC 1 cut(s) 149
EcoRII CCWGG 1 cut(s) 166
FaiI YATR 5 cut(s) 131, 133, 209, 233, 245
Fnu4HI GCNGC 1 cut(s) 16
FokI GGATG 2 cut(s) 106, 127
Fsp4HI GCNGC 1 cut(s) 16
FspBI CTAG 1 cut(s) 125
GluI GCNGC 1 cut(s) 16
HapII CCGG 1 cut(s) 75
HpaII CCGG 1 cut(s) 75
HphI GGTGA 2 cut(s) 207, 209
Hpy188I TCNGA 2 cut(s) 154, 270
HpyCH4III ACNGT 1 cut(s) 230
HpyCH4V TGCA 3 cut(s) 15, 109, 256
HpyF10VI GCNNNNNNNGC 1 cut(s) 262
Kzo9I GATC 1 cut(s) 149
LpnPI CCDG 3 cut(s) 88, 153, 180
Lsp1109I GCAGC 1 cut(s) 27
MabI ACCWGGT 1 cut(s) 166
MaeI CTAG 1 cut(s) 125
MaeIII GTNAC 1 cut(s) 162
MalI GATC 1 cut(s) 151
MboI GATC 1 cut(s) 149
MboII GAAGA 1 cut(s) 62
MflI RGATCY 1 cut(s) 149
MluCI AATT 1 cut(s) 184
MnlI CCTC 4 cut(s) 84, 105, 240, 276
MseI TTAA 1 cut(s) 225
MspI CCGG 1 cut(s) 75
MspR9I CCNGG 1 cut(s) 168
MvaI CCWGG 1 cut(s) 168
MwoI GCNNNNNNNGC 1 cut(s) 262
NdeII GATC 1 cut(s) 149
PkrI GCNGC 1 cut(s) 17
Psp6I CCWGG 1 cut(s) 166
PspGI CCWGG 1 cut(s) 166
PsrI GAACNNNNNNTAC 2 cut(s) 147, 179
PsuI RGATCY 1 cut(s) 149
RsaI GTAC 1 cut(s) 123
RsaNI GTAC 1 cut(s) 122
SaqAI TTAA 1 cut(s) 225
SatI GCNGC 1 cut(s) 16
Sau3AI GATC 1 cut(s) 149
ScaI AGTACT 1 cut(s) 123
ScrFI CCNGG 1 cut(s) 168
SetI ASST 2 cut(s) 20, 169
SexAI ACCWGGT 1 cut(s) 166
SfcI CTRYAG 1 cut(s) 207
SgeI CNNG 7 cut(s) 45, 87, 116, 118, 137, 179, 180
SpeI ACTAGT 1 cut(s) 124
Sse9I AATT 1 cut(s) 184
SspMI CTAG 1 cut(s) 125
StyD4I CCNGG 1 cut(s) 166
TaaI ACNGT 1 cut(s) 230
TaqI TCGA 1 cut(s) 188
TasI AATT 1 cut(s) 184
TatI WGTACW 1 cut(s) 121
Tru1I TTAA 1 cut(s) 225
Tru9I TTAA 1 cut(s) 225
TseI GCWGC 1 cut(s) 15
TspDTI ATGAA 1 cut(s) 131
XspI CTAG 1 cut(s) 125
ZrmI AGTACT 1 cut(s) 123
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.