pycom05g00800

This protein plays a role in synthesis of starch. It catalyzes the synthesis of the activated glycosyl donor, ADP- glucose from Glc-1-P and ATP

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr5
OG0028819
Physical Location & Seq
Reverse (-)
992318 .. 993022
705 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 705 bp
ATGAGCGTCACTGTTCATCCCGCAGACACAGGATTAAATTTGGCCCAAAAAATTAGTGTTGAAACGGGAGAAGACCTGAACCAATTAGTAATGGTAACACATGGTTATCATATTATGCGTCATATAGAATTAGGAGAAATTCCGGGGATTAAAGATTATAGAGATATAGATATAGGGTCAATGATTATTGGAATGGATCCATATCCTCTGTACCCAGCTGAGTCAACAATTAGATACACACTATTTATGGATGTACCAGTAGCTAGTGATAGGTTGTCTGTAGAAATATTTAGCAGTTTGAACGAATGGGCTGTTGAATATTTTGGGACTCCTGCTAGCTTTAGTTTGAGAGACAGAGAGGGTGTGGTGGTGACCCACCCGCAGTCACCCAACAACCATCCTCCAGCACCCTTCCCACCTCAGCATCCCACTCTAGCTCCCTCCCCACCTCACCAGATGAATGACCGCCAACCTTGCATGGCCCTTCGACATAGTTACACACTAATTATGGATGTACCAATAGCTAGTGATAGGTTGTCTGTAGAAATACTTAGCGGTTTGAATGAATGGGCTGTTGGATACTTTGGGACTCCCGCTAGGTTTAGTTTGAGAGATAAGAAGCGTTTGGCGGTGACCCACCCACAGCCTCTCAACAACCATCCTCCCGATCGACGACCGCCTACCCCGCCTGGTCCGATGACGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00500 ko00520 ko01100 ko01110 ko02026 map00500 map00520 map01100 map01110 map02026
Pfam Domains
Protein Families
NTP_transferase

Protein Analysis

235

Amino Acids

26.1

Weight (kDa)

5.84

Isoelectric Point (pI)

45.64

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0028819)

Species Orthologous Gene IDs
malus_domestica MD05G1014700.v1.1
pyrus_communis pycom05g00800

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 8 cut(s) 21, 380, 466, 555, 594, 629, 677, 686
AclWI GGATC 2 cut(s) 191, 204
AcsI RAATTY 2 cut(s) 37, 138
AfaI GTAC 3 cut(s) 212, 255, 516
AgsI TTSAA 4 cut(s) 62, 301, 317, 562
AjnI CCWGG 1 cut(s) 688
AjuI GAANNNNNNNTTGG 2 cut(s) 558, 590
AluBI AGCT 5 cut(s) 218, 263, 339, 437, 524
AluI AGCT 5 cut(s) 218, 263, 339, 437, 524
Alw26I GTCTC 1 cut(s) 345
AlwI GGATC 2 cut(s) 191, 204
AoxI GGCC 2 cut(s) 42, 480
ApoI RAATTY 2 cut(s) 37, 138
AspS9I GGNCC 3 cut(s) 43, 481, 692
AsuC2I CCSGG 1 cut(s) 144
AsuHPI GGTGA 4 cut(s) 378, 382, 443, 643
AsuNHI GCTAGC 1 cut(s) 335
AvaII GGWCC 1 cut(s) 692
BamHI GGATCC 1 cut(s) 196
BbsI GAAGAC 1 cut(s) 78
BbvCI CCTCAGC 1 cut(s) 420
BccI CCATC 2 cut(s) 405, 666
BciT130I CCWGG 1 cut(s) 690
BciVI GTATCC 1 cut(s) 572
BcnI CCSGG 1 cut(s) 144
BcoDI GTCTC 1 cut(s) 345
BfaI CTAG 5 cut(s) 264, 336, 434, 525, 597
BfmI CTRYAG 2 cut(s) 279, 540
BfuI GTATCC 1 cut(s) 572
Bme1390I CCNGG 2 cut(s) 144, 690
Bme18I GGWCC 1 cut(s) 692
BmgT120I GGNCC 3 cut(s) 43, 481, 692
BmiI GGNNCC 1 cut(s) 198
BmrFI CCNGG 2 cut(s) 144, 690
BmsI GCATC 1 cut(s) 433
BmtI GCTAGC 1 cut(s) 339
BpiI GAAGAC 1 cut(s) 78
BpmI CTGGAG 1 cut(s) 387
Bpu10I CCTNAGC 1 cut(s) 420
BpuMI CCSGG 1 cut(s) 144
BsaBI GATNNNNATC 1 cut(s) 201
BsaJI CCNNGG 1 cut(s) 143
BsaXI ACNNNNNCTCC 2 cut(s) 421, 451
Bse1I ACTGG 1 cut(s) 257
Bse8I GATNNNNATC 1 cut(s) 201
BseBI CCWGG 1 cut(s) 690
BseDI CCNNGG 1 cut(s) 143
BseGI GGATG 6 cut(s) 16, 256, 397, 424, 517, 658
BseJI GATNNNNATC 1 cut(s) 201
BseMII CTCAG 2 cut(s) 210, 434
BseNI ACTGG 1 cut(s) 257
BseYI CCCAGC 1 cut(s) 214
Bsh1285I CGRYCG 2 cut(s) 670, 677
BshFI GGCC 2 cut(s) 44, 482
BsiEI CGRYCG 2 cut(s) 670, 677
BsiSI CCGG 1 cut(s) 143
BslFI GGGAC 2 cut(s) 340, 601
BsmAI GTCTC 1 cut(s) 345
BsmFI GGGAC 2 cut(s) 340, 601
BsnI GGCC 2 cut(s) 44, 482
Bsp143I GATC 2 cut(s) 196, 667
BspACI CCGC 8 cut(s) 21, 380, 466, 555, 594, 629, 677, 686
BspANI GGCC 2 cut(s) 44, 482
BspCNI CTCAG 2 cut(s) 211, 433
BspLI GGNNCC 1 cut(s) 198
BspOI GCTAGC 1 cut(s) 339
BspPI GGATC 2 cut(s) 191, 204
BsrI ACTGG 1 cut(s) 257
BssECI CCNNGG 1 cut(s) 143
BssMI GATC 2 cut(s) 196, 667
Bst2UI CCWGG 1 cut(s) 690
Bst4CI ACNGT 1 cut(s) 13
BstC8I GCNNGC 1 cut(s) 337
BstDEI CTNAG 3 cut(s) 219, 420, 551
BstEII GGTNACC 2 cut(s) 370, 631
BstF5I GGATG 6 cut(s) 16, 256, 397, 424, 517, 658
BstKTI GATC 2 cut(s) 199, 670
BstMAI GTCTC 1 cut(s) 345
BstMBI GATC 2 cut(s) 196, 667
BstMCI CGRYCG 2 cut(s) 670, 677
BstMWI GCNNNNNNNGC 2 cut(s) 474, 685
BstNI CCWGG 1 cut(s) 690
BstPI GGTNACC 2 cut(s) 370, 631
BstSCI CCNGG 2 cut(s) 142, 688
BstSFI CTRYAG 2 cut(s) 279, 540
BstV2I GAAGAC 1 cut(s) 78
BstX2I RGATCY 1 cut(s) 196
BstYI RGATCY 1 cut(s) 196
BsuI GTATCC 1 cut(s) 572
BsuRI GGCC 2 cut(s) 44, 482
BtsCI GGATG 6 cut(s) 16, 256, 397, 424, 517, 658
BtsIMutI CAGTG 1 cut(s) 9
Cac8I GCNNGC 1 cut(s) 337
Cfr13I GGNCC 3 cut(s) 43, 481, 692
CseI GACGC 1 cut(s) 107
Csp6I GTAC 3 cut(s) 211, 254, 515
CviAII CATG 2 cut(s) 101, 478
CviQI GTAC 3 cut(s) 211, 254, 515
DdeI CTNAG 3 cut(s) 219, 420, 551
DpnI GATC 2 cut(s) 198, 669
DpnII GATC 2 cut(s) 196, 667
Eco47I GGWCC 1 cut(s) 692
Eco91I GGTNACC 2 cut(s) 370, 631
EcoO65I GGTNACC 2 cut(s) 370, 631
EcoRII CCWGG 1 cut(s) 688
FaeI CATG 2 cut(s) 104, 481
FaqI GGGAC 2 cut(s) 340, 601
FatI CATG 2 cut(s) 100, 477
FauI CCCGC 4 cut(s) 28, 387, 601, 693
FokI GGATG 6 cut(s) 3, 263, 384, 411, 524, 645
FspBI CTAG 5 cut(s) 264, 336, 434, 525, 597
GsaI CCCAGC 1 cut(s) 218
GsuI CTGGAG 1 cut(s) 387
HaeIII GGCC 2 cut(s) 44, 482
HapII CCGG 1 cut(s) 143
HgaI GACGC 1 cut(s) 107
Hin1II CATG 2 cut(s) 104, 481
HincII GTYRAC 1 cut(s) 225
HindII GTYRAC 1 cut(s) 225
HinfI GANTC 3 cut(s) 221, 328, 589
HpaII CCGG 1 cut(s) 143
HphI GGTGA 4 cut(s) 378, 382, 443, 643
Hpy166II GTNNAC 1 cut(s) 225
Hpy188I TCNGA 1 cut(s) 696
Hpy188III TCNNGA 1 cut(s) 665
Hpy8I GTNNAC 1 cut(s) 225
Hpy99I CGWCG 1 cut(s) 675
HpyAV CCTTC 2 cut(s) 421, 494
HpyCH4III ACNGT 1 cut(s) 13
HpyCH4IV ACGT 1 cut(s) 701
HpyCH4V TGCA 1 cut(s) 477
HpyF10VI GCNNNNNNNGC 2 cut(s) 474, 685
HpyF3I CTNAG 3 cut(s) 219, 420, 551
HpySE526I ACGT 1 cut(s) 701
Hsp92II CATG 2 cut(s) 104, 481
Kzo9I GATC 2 cut(s) 196, 667
LmnI GCTCC 1 cut(s) 442
LpnPI CCDG 9 cut(s) 15, 89, 156, 228, 270, 345, 417, 467, 675
LweI GCATC 1 cut(s) 433
MaeI CTAG 5 cut(s) 264, 336, 434, 525, 597
MaeII ACGT 1 cut(s) 701
MaeIII GTNAC 6 cut(s) 7, 94, 370, 384, 494, 631
MalI GATC 2 cut(s) 198, 669
MboI GATC 2 cut(s) 196, 667
MboII GAAGA 1 cut(s) 83
MflI RGATCY 1 cut(s) 196
MluCI AATT 7 cut(s) 37, 51, 83, 128, 138, 228, 504
MlyI GAGTC 3 cut(s) 230, 322, 583
MmeI TCCRAC 1 cut(s) 556
MnlI CCTC 8 cut(s) 216, 352, 411, 429, 451, 459, 657, 672
MseI TTAA 2 cut(s) 35, 150
MspA1I CMGCKG 1 cut(s) 218
MspI CCGG 1 cut(s) 143
MspR9I CCNGG 2 cut(s) 144, 690
MvaI CCWGG 1 cut(s) 690
MwoI GCNNNNNNNGC 2 cut(s) 474, 685
NciI CCSGG 1 cut(s) 144
NdeII GATC 2 cut(s) 196, 667
NheI GCTAGC 1 cut(s) 335
NlaIII CATG 2 cut(s) 104, 481
NlaIV GGNNCC 1 cut(s) 198
NmuCI GTSAC 4 cut(s) 7, 370, 384, 631
Ple19I CGATCG 1 cut(s) 670
PleI GAGTC 3 cut(s) 229, 322, 583
PpsI GAGTC 3 cut(s) 229, 322, 583
Psp6I CCWGG 1 cut(s) 688
PspEI GGTNACC 2 cut(s) 370, 631
PspFI CCCAGC 1 cut(s) 214
PspGI CCWGG 1 cut(s) 688
PspN4I GGNNCC 1 cut(s) 198
PspPI GGNCC 3 cut(s) 43, 481, 692
PsuI RGATCY 1 cut(s) 196
PvuI CGATCG 1 cut(s) 670
PvuII CAGCTG 1 cut(s) 218
RsaI GTAC 3 cut(s) 212, 255, 516
RsaNI GTAC 3 cut(s) 211, 254, 515
SaqAI TTAA 2 cut(s) 35, 150
Sau3AI GATC 2 cut(s) 196, 667
Sau96I GGNCC 3 cut(s) 43, 481, 692
SchI GAGTC 3 cut(s) 230, 322, 583
ScrFI CCNGG 2 cut(s) 144, 690
SfaNI GCATC 1 cut(s) 433
SfcI CTRYAG 2 cut(s) 279, 540
SinI GGWCC 1 cut(s) 692
Sse9I AATT 7 cut(s) 37, 51, 83, 128, 138, 228, 504
SsiI CCGC 8 cut(s) 21, 380, 466, 555, 594, 629, 677, 686
SspI AATATT 2 cut(s) 288, 320
SspMI CTAG 5 cut(s) 264, 336, 434, 525, 597
StyD4I CCNGG 2 cut(s) 142, 688
TaaI ACNGT 1 cut(s) 13
TaiI ACGT 1 cut(s) 704
TaqI TCGA 2 cut(s) 487, 670
TasI AATT 7 cut(s) 37, 51, 83, 128, 138, 228, 504
Tru1I TTAA 2 cut(s) 35, 150
Tru9I TTAA 2 cut(s) 35, 150
TscAI CASTG 1 cut(s) 16
TseFI GTSAC 4 cut(s) 7, 370, 384, 631
Tsp45I GTSAC 4 cut(s) 7, 370, 384, 631
TspDTI ATGAA 3 cut(s) 5, 473, 579
TspRI CASTG 1 cut(s) 16
VpaK11BI GGWCC 1 cut(s) 692
XapI RAATTY 2 cut(s) 37, 138
XspI CTAG 5 cut(s) 264, 336, 434, 525, 597
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.