Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr5

Orthogroup ID

OG0024620

Physical Location & Seq

Genomic Coordinates Forward (+)

1773887 .. 1774156

Gene Structure 270 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom05g01440.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 270 bp

ATGTATCTGAGAACTCTTTTAGCTATTCCCATGTGTTTTTTCGTGGGACCATGCATAAATCTTGATAGCAAACTAGCAGCATACATTATATCAGGCCTGGTTGCAGTTAAATATAACAAACTGCCAACAATCTGCCTATATAAGCCTTCATCAGTCAGCTCACTTCCATCAATTTTCTTCAGTTTCTCACCAGTGGGAAGAGGAATTGTCACAGACTTACAATCCTCTAGGCCAAACTTTGCAAGTAAGGACTTTGCATATTTACTTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000325 GO:0003674 GO:0003824 GO:0005215 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0005774 GO:0005911 GO:0006810 GO:0008150 GO:0009506 GO:0009605 GO:0009607 GO:0009624 GO:0015399 GO:0015405 GO:0016020 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0016887 GO:0017111 GO:0022804 GO:0022857 GO:0030054 GO:0031090 GO:0042623 GO:0042626 GO:0043207 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043492 GO:0044422 GO:0044424 GO:0044437 GO:0044444 GO:0044446 GO:0044464 GO:0050896 GO:0051179 GO:0051234 GO:0051704 GO:0051707 GO:0055044 GO:0055085 GO:0098588 GO:0098805

KEGG Pathways

Metabolic & Signaling

ko01523 ko01524 ko02010 ko04071 ko04976 ko04977 ko05206 map01523 map01524 map02010 map04071 map04976 map04977 map05206

Pfam Domains

Protein Families

ABC_membrane ABC_tran

Protein Analysis

90

Amino Acids

9.79

Weight (kDa)

9.37

Isoelectric Point (pI)

43.52

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0024620)

Species	Orthologous Gene IDs
pyrus_communis	pycom02g18320 pycom05g01440 pycom12g18990

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AcuI	CTGAAG	1 cut(s)	163
AjnI	CCWGG	1 cut(s)	96
AluBI	AGCT	2 cut(s)	23, 159
AluI	AGCT	2 cut(s)	23, 159
AoxI	GGCC	2 cut(s)	94, 230
ApeKI	GCWGC	1 cut(s)	77
AspS9I	GGNCC	1 cut(s)	47
AsuHPI	GGTGA	1 cut(s)	180
AvaII	GGWCC	1 cut(s)	47
BbvI	GCAGC	1 cut(s)	89
BccI	CCATC	1 cut(s)	175
BciT130I	CCWGG	1 cut(s)	98
BfaI	CTAG	2 cut(s)	74, 228
BisI	GCNGC	1 cut(s)	78
BlsI	GCNGC	1 cut(s)	79
Bme1390I	CCNGG	1 cut(s)	98
Bme18I	GGWCC	1 cut(s)	47
BmgT120I	GGNCC	1 cut(s)	47
BmiI	GGNNCC	1 cut(s)	48
BmrFI	CCNGG	1 cut(s)	98
Bse1I	ACTGG	1 cut(s)	191
BseBI	CCWGG	1 cut(s)	98
BseNI	ACTGG	1 cut(s)	191
BseXI	GCAGC	1 cut(s)	89
BshFI	GGCC	2 cut(s)	96, 232
BslFI	GGGAC	1 cut(s)	60
BsmFI	GGGAC	1 cut(s)	60
BsnI	GGCC	2 cut(s)	96, 232
BspANI	GGCC	2 cut(s)	96, 232
BspLI	GGNNCC	1 cut(s)	48
BsrI	ACTGG	1 cut(s)	191
Bst2UI	CCWGG	1 cut(s)	98
Bst6I	CTCTTC	1 cut(s)	193
BstDEI	CTNAG	1 cut(s)	8
BstNI	CCWGG	1 cut(s)	98
BstSCI	CCNGG	1 cut(s)	96
BstV1I	GCAGC	1 cut(s)	89
BsuRI	GGCC	2 cut(s)	96, 232
BtsIMutI	CAGTG	1 cut(s)	198
Cfr13I	GGNCC	1 cut(s)	47
CviAII	CATG	2 cut(s)	31, 51
CviJI	RGCY	5 cut(s)	23, 96, 145, 159, 232
CviKI_1	RGCY	5 cut(s)	23, 96, 145, 159, 232
DdeI	CTNAG	1 cut(s)	8
Eam1104I	CTCTTC	1 cut(s)	193
EarI	CTCTTC	1 cut(s)	193
Eco147I	AGGCCT	1 cut(s)	96
Eco47I	GGWCC	1 cut(s)	47
Eco57I	CTGAAG	1 cut(s)	163
EcoRII	CCWGG	1 cut(s)	96
EcoT22I	ATGCAT	1 cut(s)	56
FaeI	CATG	2 cut(s)	34, 54
FaiI	YATR	9 cut(s)	32, 52, 56, 82, 89, 114, 139, 141, 259
FaqI	GGGAC	1 cut(s)	60
FatI	CATG	2 cut(s)	30, 50
Fnu4HI	GCNGC	1 cut(s)	78
Fsp4HI	GCNGC	1 cut(s)	78
FspBI	CTAG	2 cut(s)	74, 228
GluI	GCNGC	1 cut(s)	78
HaeIII	GGCC	2 cut(s)	96, 232
Hin1II	CATG	2 cut(s)	34, 54
HphI	GGTGA	1 cut(s)	180
Hpy188I	TCNGA	1 cut(s)	9
Hpy188III	TCNNGA	1 cut(s)	62
HpyAV	CCTTC	1 cut(s)	156
HpyCH4V	TGCA	4 cut(s)	54, 104, 242, 257
HpyF3I	CTNAG	1 cut(s)	8
Hsp92II	CATG	2 cut(s)	34, 54
LpnPI	CCDG	4 cut(s)	78, 83, 110, 204
Lsp1109I	GCAGC	1 cut(s)	89
MaeI	CTAG	2 cut(s)	74, 228
MaeIII	GTNAC	1 cut(s)	208
MboII	GAAGA	2 cut(s)	169, 210
MluCI	AATT	2 cut(s)	171, 204
MnlI	CCTC	2 cut(s)	194, 235
Mph1103I	ATGCAT	1 cut(s)	56
MseI	TTAA	1 cut(s)	108
MspR9I	CCNGG	1 cut(s)	98
MvaI	CCWGG	1 cut(s)	98
NlaIII	CATG	2 cut(s)	34, 54
NlaIV	GGNNCC	1 cut(s)	48
NmuCI	GTSAC	1 cut(s)	208
NsiI	ATGCAT	1 cut(s)	56
PceI	AGGCCT	1 cut(s)	96
PkrI	GCNGC	1 cut(s)	79
Psp6I	CCWGG	1 cut(s)	96
PspGI	CCWGG	1 cut(s)	96
PspN4I	GGNNCC	1 cut(s)	48
PspPI	GGNCC	1 cut(s)	47
SaqAI	TTAA	1 cut(s)	108
SatI	GCNGC	1 cut(s)	78
Sau96I	GGNCC	1 cut(s)	47
ScrFI	CCNGG	1 cut(s)	98
SetI	ASST	2 cut(s)	25, 161
SinI	GGWCC	1 cut(s)	47
Sse9I	AATT	2 cut(s)	171, 204
SseBI	AGGCCT	1 cut(s)	96
SspMI	CTAG	2 cut(s)	74, 228
StuI	AGGCCT	1 cut(s)	96
StyD4I	CCNGG	1 cut(s)	96
TasI	AATT	2 cut(s)	171, 204
Tru1I	TTAA	1 cut(s)	108
Tru9I	TTAA	1 cut(s)	108
TscAI	CASTG	1 cut(s)	198
TseFI	GTSAC	1 cut(s)	208
TseI	GCWGC	1 cut(s)	77
Tsp45I	GTSAC	1 cut(s)	208
TspDTI	ATGAA	1 cut(s)	138
TspRI	CASTG	1 cut(s)	198
VpaK11BI	GGWCC	1 cut(s)	47
XspI	CTAG	2 cut(s)	74, 228
Zsp2I	ATGCAT	1 cut(s)	56

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.