Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr5

Orthogroup ID

OG0029221

Physical Location & Seq

Genomic Coordinates Forward (+)

2262065 .. 2264036

Gene Structure 1972 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 543 bp

ATGGATCAATATCTCATTTGCCTACAGGCTATCTGTGGAGTCCCCACGTTGTGCCAAAGCCAAGTGTGGGGATCTCTTGTGGATGTCGTTGGTTATTGTTTCTTAAACCTTGGGTCGAAGTATCAACCTCAAGATGAGTTTGTTGAATGGATTCAGAAAGGGCCTAAACCTATATATATTGGCTTTGGAAGCATGCCGCTCGATGATCCCAAGAAAACTACGAATATTATATTGGAGGCGTTGAAAGATACAGGACAGAGAGGAATAATTGATAGAGGTTGGGGAGACCTGGGTAATTTTACAGAAGCATCCGATAATGTTTTCCTCTTGGAGGACTGCCCTCATGATTGGCTATTTCCTCAATGTTCAGCAGTGGTTCATCATGGTGGTGCTGGGACTACGGCTACAGGATTGAGAGCTGGGTGTCCAACAACCATAGTGCCGTTCTTTGGTGATCAGTTCTTCTGGGGTGATAGGATACATGAGAAAGGCTTGGGGCCTGCACCAATACCTATTTCTCAGCTAACAAGTCAGAATGTGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0003006 GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0005774 GO:0006629 GO:0007275 GO:0008150 GO:0008152 GO:0008194 GO:0008202 GO:0009058 GO:0009791 GO:0009812 GO:0009813 GO:0009845 GO:0010154 GO:0010214 GO:0015020 GO:0016020 GO:0016125 GO:0016740 GO:0016757 GO:0016758 GO:0016906 GO:0022414 GO:0031090 GO:0032501 GO:0032502 GO:0035251 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044238 GO:0044422 GO:0044424 GO:0044437 GO:0044444 GO:0044446 GO:0044464 GO:0046527 GO:0048316 GO:0048608 GO:0048731 GO:0048856 GO:0051505 GO:0051506 GO:0051507 GO:0051508 GO:0051509 GO:0061458 GO:0071704 GO:0080043 GO:0080044 GO:0090351 GO:0098588 GO:0098805 GO:1901360 GO:1901576 GO:1901615

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Glyco_transf_28 UDPGT

Protein Analysis

181

Amino Acids

19.72

Weight (kDa)

4.75

Isoelectric Point (pI)

26.63

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
UDPGT	PF00201	46 - 177	7e-07	UDP-glucoronosyl and UDP-glucosyl transferase
EryCIII-like_C	PF06722	101 - 176	7.2e-13	Erythromycin biosynthesis protein CIII-like, C-terminal domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0029221)

Species	Orthologous Gene IDs
pyrus_communis	pycom02g19750 pycom05g01930

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccBSI	CCGCTC	1 cut(s)	199
AciI	CCGC	1 cut(s)	197
AclWI	GGATC	3 cut(s)	12, 79, 200
AdeI	CACNNNGTG	1 cut(s)	51
AfiI	CCNNNNNNNGG	3 cut(s)	67, 331, 449
AgsI	TTSAA	2 cut(s)	146, 244
AjnI	CCWGG	1 cut(s)	288
AjuI	GAANNNNNNNTTGG	4 cut(s)	215, 247, 499, 531
AluBI	AGCT	2 cut(s)	419, 523
AluI	AGCT	2 cut(s)	419, 523
Alw26I	GTCTC	1 cut(s)	279
AlwI	GGATC	3 cut(s)	12, 79, 200
AoxI	GGCC	2 cut(s)	161, 497
Asp700I	GAANNNNTTC	1 cut(s)	150
AspS9I	GGNCC	2 cut(s)	161, 497
AsuHPI	GGTGA	2 cut(s)	464, 482
BceAI	ACGGC	2 cut(s)	417, 427
BcgI	CGANNNNNNTGC	2 cut(s)	181, 215
BciT130I	CCWGG	1 cut(s)	290
BciVI	GTATCC	1 cut(s)	471
BclI	TGATCA	1 cut(s)	454
BcoDI	GTCTC	1 cut(s)	279
BfmI	CTRYAG	2 cut(s)	23, 405
BfuI	GTATCC	1 cut(s)	471
BisI	GCNGC	1 cut(s)	197
BlsI	GCNGC	1 cut(s)	198
Bme1390I	CCNGG	1 cut(s)	290
BmgT120I	GGNCC	2 cut(s)	161, 497
BmiI	GGNNCC	1 cut(s)	498
BmrFI	CCNGG	1 cut(s)	290
BmsI	GCATC	1 cut(s)	317
BpuEI	CTTGAG	1 cut(s)	114
BsaBI	GATNNNNATC	1 cut(s)	9
BsaI	GGTCTC	1 cut(s)	279
BsaJI	CCNNGG	2 cut(s)	109, 289
Bsc4I	CCNNNNNNNGG	3 cut(s)	67, 331, 449
Bse8I	GATNNNNATC	1 cut(s)	9
BseBI	CCWGG	1 cut(s)	290
BseDI	CCNNGG	2 cut(s)	109, 289
BseGI	GGATG	2 cut(s)	88, 308
BseJI	GATNNNNATC	1 cut(s)	9
BseLI	CCNNNNNNNGG	3 cut(s)	67, 331, 449
BseMII	CTCAG	1 cut(s)	533
BseYI	CCCAGC	2 cut(s)	392, 419
BsgI	GTGCAG	1 cut(s)	486
BshFI	GGCC	2 cut(s)	163, 499
BslFI	GGGAC	2 cut(s)	26, 409
BslI	CCNNNNNNNGG	3 cut(s)	67, 331, 449
BsmAI	GTCTC	1 cut(s)	279
BsmFI	GGGAC	2 cut(s)	26, 409
BsnI	GGCC	2 cut(s)	163, 499
Bso31I	GGTCTC	1 cut(s)	279
Bsp143I	GATC	4 cut(s)	4, 71, 205, 454
BspACI	CCGC	1 cut(s)	197
BspANI	GGCC	2 cut(s)	163, 499
BspCNI	CTCAG	1 cut(s)	532
BspHI	TCATGA	1 cut(s)	343
BspLI	GGNNCC	1 cut(s)	498
BspPI	GGATC	3 cut(s)	12, 79, 200
BspTNI	GGTCTC	1 cut(s)	279
BsrBI	CCGCTC	1 cut(s)	199
BssECI	CCNNGG	2 cut(s)	109, 289
BssMI	GATC	4 cut(s)	4, 71, 205, 454
BssT1I	CCWWGG	1 cut(s)	109
Bst2UI	CCWGG	1 cut(s)	290
BstC8I	GCNNGC	2 cut(s)	194, 501
BstDEI	CTNAG	1 cut(s)	519
BstENI	CCTNNNNNAGG	1 cut(s)	329
BstF5I	GGATG	2 cut(s)	88, 308
BstKTI	GATC	4 cut(s)	7, 74, 208, 457
BstMAI	GTCTC	1 cut(s)	279
BstMBI	GATC	4 cut(s)	4, 71, 205, 454
BstMWI	GCNNNNNNNGC	1 cut(s)	189
BstNI	CCWGG	1 cut(s)	290
BstNSI	RCATGY	1 cut(s)	196
BstSCI	CCNGG	1 cut(s)	288
BstSFI	CTRYAG	2 cut(s)	23, 405
BstX2I	RGATCY	1 cut(s)	71
BstYI	RGATCY	1 cut(s)	71
BsuI	GTATCC	1 cut(s)	471
BsuRI	GGCC	2 cut(s)	163, 499
BtsCI	GGATG	2 cut(s)	88, 308
BtsI	GCAGTG	1 cut(s)	378
BtsIMutI	CAGTG	1 cut(s)	378
Cac8I	GCNNGC	2 cut(s)	194, 501
CciI	TCATGA	1 cut(s)	343
Cfr13I	GGNCC	2 cut(s)	161, 497
CviAII	CATG	4 cut(s)	193, 344, 383, 482
DdeI	CTNAG	1 cut(s)	519
DpnI	GATC	4 cut(s)	6, 73, 207, 456
DpnII	GATC	4 cut(s)	4, 71, 205, 454
DraIII	CACNNNGTG	1 cut(s)	51
Eco130I	CCWWGG	1 cut(s)	109
Eco31I	GGTCTC	1 cut(s)	279
EcoNI	CCTNNNNNAGG	1 cut(s)	329
EcoO109I	RGGNCCY	2 cut(s)	161, 497
EcoRII	CCWGG	1 cut(s)	288
EcoT14I	CCWWGG	1 cut(s)	109
ErhI	CCWWGG	1 cut(s)	109
FaeI	CATG	4 cut(s)	196, 347, 386, 485
FaiI	YATR	9 cut(s)	173, 175, 177, 194, 230, 345, 384, 437, 483
FaqI	GGGAC	2 cut(s)	26, 409
FatI	CATG	4 cut(s)	192, 343, 382, 481
FbaI	TGATCA	1 cut(s)	454
Fnu4HI	GCNGC	1 cut(s)	197
FokI	GGATG	2 cut(s)	95, 295
Fsp4HI	GCNGC	1 cut(s)	197
GluI	GCNGC	1 cut(s)	197
GsaI	CCCAGC	2 cut(s)	396, 423
HaeIII	GGCC	2 cut(s)	163, 499
Hin1II	CATG	4 cut(s)	196, 347, 386, 485
HinfI	GANTC	2 cut(s)	39, 151
HphI	GGTGA	2 cut(s)	464, 482
Hpy188I	TCNGA	3 cut(s)	156, 313, 534
Hpy188III	TCNNGA	2 cut(s)	131, 344
HpyCH4IV	ACGT	1 cut(s)	47
HpyCH4V	TGCA	1 cut(s)	503
HpyF10VI	GCNNNNNNNGC	1 cut(s)	189
HpyF3I	CTNAG	1 cut(s)	519
HpySE526I	ACGT	1 cut(s)	47
Hsp92II	CATG	4 cut(s)	196, 347, 386, 485
Ksp22I	TGATCA	1 cut(s)	454
Kzo9I	GATC	4 cut(s)	4, 71, 205, 454
LpnPI	CCDG	9 cut(s)	11, 237, 275, 302, 378, 393, 405, 451, 513
LweI	GCATC	1 cut(s)	317
MaeII	ACGT	1 cut(s)	47
MalI	GATC	4 cut(s)	6, 73, 207, 456
MbiI	CCGCTC	1 cut(s)	199
MboI	GATC	4 cut(s)	4, 71, 205, 454
MboII	GAAGA	1 cut(s)	454
MflI	RGATCY	1 cut(s)	71
MluCI	AATT	2 cut(s)	267, 295
MlyI	GAGTC	1 cut(s)	48
MmeI	TCCRAC	1 cut(s)	452
MnlI	CCTC	8 cut(s)	138, 229, 254, 269, 325, 335, 351, 369
MroXI	GAANNNNTTC	1 cut(s)	150
MseI	TTAA	1 cut(s)	104
MslI	CAYNNNNRTG	2 cut(s)	384, 387
MspR9I	CCNGG	1 cut(s)	290
MvaI	CCWGG	1 cut(s)	290
MwoI	GCNNNNNNNGC	1 cut(s)	189
NdeII	GATC	4 cut(s)	4, 71, 205, 454
NlaIII	CATG	4 cut(s)	196, 347, 386, 485
NlaIV	GGNNCC	1 cut(s)	498
NspI	RCATGY	1 cut(s)	196
PaeI	GCATGC	1 cut(s)	196
PagI	TCATGA	1 cut(s)	343
PdmI	GAANNNNTTC	1 cut(s)	150
PfeI	GAWTC	1 cut(s)	151
PkrI	GCNGC	1 cut(s)	198
PleI	GAGTC	1 cut(s)	47
PpsI	GAGTC	1 cut(s)	47
Psp6I	CCWGG	1 cut(s)	288
PspFI	CCCAGC	2 cut(s)	392, 419
PspGI	CCWGG	1 cut(s)	288
PspN4I	GGNNCC	1 cut(s)	498
PspPI	GGNCC	2 cut(s)	161, 497
PsuI	RGATCY	1 cut(s)	71
RseI	CAYNNNNRTG	2 cut(s)	384, 387
SaqAI	TTAA	1 cut(s)	104
SatI	GCNGC	1 cut(s)	197
Sau3AI	GATC	4 cut(s)	4, 71, 205, 454
Sau96I	GGNCC	2 cut(s)	161, 497
SchI	GAGTC	1 cut(s)	48
ScrFI	CCNGG	1 cut(s)	290
SetI	ASST	9 cut(s)	50, 111, 130, 172, 280, 291, 421, 514, 525
SfaNI	GCATC	1 cut(s)	317
SfcI	CTRYAG	2 cut(s)	23, 405
SmiMI	CAYNNNNRTG	2 cut(s)	384, 387
SmlI	CTYRAG	1 cut(s)	129
SmoI	CTYRAG	1 cut(s)	129
SphI	GCATGC	1 cut(s)	196
Sse9I	AATT	2 cut(s)	267, 295
SsiI	CCGC	1 cut(s)	197
SspI	AATATT	1 cut(s)	226
StyD4I	CCNGG	1 cut(s)	288
StyI	CCWWGG	1 cut(s)	109
TaiI	ACGT	1 cut(s)	50
TaqI	TCGA	2 cut(s)	116, 201
TasI	AATT	2 cut(s)	267, 295
TauI	GCSGC	1 cut(s)	199
TfiI	GAWTC	1 cut(s)	151
Tru1I	TTAA	1 cut(s)	104
Tru9I	TTAA	1 cut(s)	104
TscAI	CASTG	1 cut(s)	378
TspDTI	ATGAA	1 cut(s)	368
TspRI	CASTG	1 cut(s)	378
XagI	CCTNNNNNAGG	1 cut(s)	329
XceI	RCATGY	1 cut(s)	196
XmnI	GAANNNNTTC	1 cut(s)	150

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.