pycom05g07180

Presequence protease 1, chloroplastic mitochondrial-like

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr5
Physical Location & Seq
Forward (+)
10160034 .. 10162827
2794 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 927 bp
ATGTGGGAATTACATAATTTCGTTGATCTACTCCTCGATGCTGTCTTCTTTCCTAATTGTGTGGAGGACATCCAGATTTTCTGGCAACAGGAGTACCTAGACATGTTTGATGCAAGTTCAGCACCAAATTTATCAAGGATCAAACCACAAAGACCATTTTCAGAGTCAGTCATGATTCATAAGAACTATCCTTTTGGTAATTCAGGTGACTTAGAGAAGAAAAACATGGTATGCCTCAGTTGGTTGCTCTGTGATAGGCCCTTAGACATGGAGACTGAGCGACCAATTGATGTTTTTGTTCATCTCATTTCGGCAATTATTCTTTCTCCATTGAGGAGAATGTTGCTGGAATATGGCTATGGAGATATTTTTATTGAGGTTGATTTTCATCTCCTTCAACCTCTATTGAGTATATTGGTGATCGATGTTTCTCGCGATGACATTTCAAAGGTAGAGCTAGTAGTCACGAGTACACTTATACTATTTGCGGAGAAAGGCTTTGATACAGATGCTGTAGAAGCATCAATGAATACAATGGAGTTCATTTGCGGGGAACATAATAAGAAAATACTCCCTGAAGGCTTGTCCTTAATGCTCCAGTCCATTGATAAATGGATATATGGTATGGATCGCTTTGATCCACTGAAGCATGGCAATTTTTTAATGGAACTGAATGCCAGAATAAAAAAGGAAGGCTCTATAGCTGTTTTCTCTCCTCTGGTAAAGAAATTCATTTTGAACAATCCTCATAAAGTTGTGGTAGCAATGCAGCCTGATCCTCAAAAGTTTTCTGGTGATAAAAAAGTTGAGGAAGAAATCTTGGGGAAAGTTAAAGCCGGTATGACAGAAAATGATCTCGCTGAACTGGTACATGCTACCCCTACCCGAGAGCTGCGACTGAAGCAGATAAATCCTGACCCACCATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.

Protein Analysis

309

Amino Acids

35.28

Weight (kDa)

5.04

Isoelectric Point (pI)

39.03

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

Orthologous Genes (Group: OG0028836)

Species Orthologous Gene IDs
malus_domestica MD05G1078400.v1.1
pyrus_communis pycom05g07180

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 1 cut(s) 435
AciI CCGC 2 cut(s) 488, 549
AclWI GGATC 4 cut(s) 146, 632, 636, 770
AcsI RAATTY 2 cut(s) 127, 728
AcuI CTGAAG 3 cut(s) 597, 665, 920
AfaI GTAC 3 cut(s) 95, 472, 870
AflIII ACRYGT 1 cut(s) 102
AgsI TTSAA 3 cut(s) 398, 447, 739
AluBI AGCT 3 cut(s) 457, 704, 892
AluI AGCT 3 cut(s) 457, 704, 892
Alw26I GTCTC 1 cut(s) 266
AlwI GGATC 4 cut(s) 146, 632, 636, 770
AlwNI CAGNNNCTG 1 cut(s) 512
Ama87I CYCGRG 1 cut(s) 885
AoxI GGCC 1 cut(s) 257
ApeKI GCWGC 2 cut(s) 769, 892
ApoI RAATTY 2 cut(s) 127, 728
AspS9I GGNCC 1 cut(s) 258
AsuHPI GGTGA 3 cut(s) 218, 430, 806
AvaI CYCGRG 1 cut(s) 885
BaeI ACNNNNGTAYC 2 cut(s) 77, 110
BauI CACGAG 1 cut(s) 466
BbsI GAAGAC 1 cut(s) 37
BbvI GCAGC 2 cut(s) 781, 879
BcoDI GTCTC 1 cut(s) 266
BfaI CTAG 2 cut(s) 98, 458
BfmI CTRYAG 2 cut(s) 513, 699
BisI GCNGC 2 cut(s) 770, 893
BlsI GCNGC 2 cut(s) 771, 894
BmeT110I CYCGRG 1 cut(s) 885
BmgT120I GGNCC 1 cut(s) 258
BmsI GCATC 4 cut(s) 28, 100, 499, 530
BpiI GAAGAC 1 cut(s) 37
BpmI CTGGAG 1 cut(s) 581
Bsa29I ATCGAT 1 cut(s) 423
BsaBI GATNNNNATC 1 cut(s) 387
Bse118I RCCGGY 1 cut(s) 836
Bse1I ACTGG 2 cut(s) 598, 870
Bse3DI GCAATG 1 cut(s) 771
Bse8I GATNNNNATC 1 cut(s) 387
BseCI ATCGAT 1 cut(s) 423
BseGI GGATG 1 cut(s) 69
BseJI GATNNNNATC 1 cut(s) 387
BseMI GCAATG 1 cut(s) 771
BseMII CTCAG 2 cut(s) 250, 267
BseNI ACTGG 2 cut(s) 598, 870
BseRI GAGGAG 3 cut(s) 23, 349, 705
BseXI GCAGC 2 cut(s) 781, 879
Bsh1236I CGCG 1 cut(s) 435
BshFI GGCC 1 cut(s) 259
BshVI ATCGAT 1 cut(s) 423
BsiHKCI CYCGRG 1 cut(s) 885
BsiSI CCGG 1 cut(s) 837
BsmAI GTCTC 1 cut(s) 266
BsmI GAATGC 1 cut(s) 679
BsnI GGCC 1 cut(s) 259
BsoBI CYCGRG 1 cut(s) 885
Bsp143I GATC 7 cut(s) 25, 138, 420, 628, 637, 775, 853
Bsp68I TCGCGA 1 cut(s) 435
BspACI CCGC 2 cut(s) 488, 549
BspANI GGCC 1 cut(s) 259
BspCNI CTCAG 2 cut(s) 249, 268
BspDI ATCGAT 1 cut(s) 423
BspFNI CGCG 1 cut(s) 435
BspHI TCATGA 1 cut(s) 171
BspPI GGATC 4 cut(s) 146, 632, 636, 770
BsrDI GCAATG 1 cut(s) 771
BsrFI RCCGGY 1 cut(s) 836
BsrI ACTGG 2 cut(s) 598, 870
BssAI RCCGGY 1 cut(s) 836
BssMI GATC 7 cut(s) 25, 138, 420, 628, 637, 775, 853
BssSI CACGAG 1 cut(s) 466
Bst2BI CACGAG 1 cut(s) 466
BstDEI CTNAG 4 cut(s) 211, 236, 262, 276
BstF5I GGATG 1 cut(s) 69
BstFNI CGCG 1 cut(s) 435
BstKTI GATC 7 cut(s) 28, 141, 423, 631, 640, 778, 856
BstMAI GTCTC 1 cut(s) 266
BstMBI GATC 7 cut(s) 25, 138, 420, 628, 637, 775, 853
BstMWI GCNNNNNNNGC 3 cut(s) 119, 518, 901
BstNSI RCATGY 2 cut(s) 106, 875
BstSFI CTRYAG 2 cut(s) 513, 699
BstUI CGCG 1 cut(s) 435
BstV1I GCAGC 2 cut(s) 781, 879
BstV2I GAAGAC 1 cut(s) 37
Bsu15I ATCGAT 1 cut(s) 423
BsuRI GGCC 1 cut(s) 259
BsuTUI ATCGAT 1 cut(s) 423
BtgZI GCGATG 1 cut(s) 450
BtsCI GGATG 1 cut(s) 69
BtsIMutI CAGTG 1 cut(s) 641
BtuMI TCGCGA 1 cut(s) 435
CaiI CAGNNNCTG 1 cut(s) 512
CciI TCATGA 1 cut(s) 171
Cfr10I RCCGGY 1 cut(s) 836
Cfr13I GGNCC 1 cut(s) 258
ClaI ATCGAT 1 cut(s) 423
Csp6I GTAC 3 cut(s) 94, 471, 869
CviAII CATG 6 cut(s) 103, 172, 226, 268, 650, 872
CviQI GTAC 3 cut(s) 94, 471, 869
DdeI CTNAG 4 cut(s) 211, 236, 262, 276
DpnI GATC 7 cut(s) 27, 140, 422, 630, 639, 777, 855
DpnII GATC 7 cut(s) 25, 138, 420, 628, 637, 775, 853
Eco57I CTGAAG 3 cut(s) 597, 665, 920
Eco88I CYCGRG 1 cut(s) 885
EcoO109I RGGNCCY 1 cut(s) 258
FaeI CATG 6 cut(s) 106, 175, 229, 271, 653, 875
FatI CATG 6 cut(s) 102, 171, 225, 267, 649, 871
FauI CCCGC 1 cut(s) 542
Fnu4HI GCNGC 2 cut(s) 770, 893
FokI GGATG 1 cut(s) 56
Fsp4HI GCNGC 2 cut(s) 770, 893
FspBI CTAG 2 cut(s) 98, 458
GluI GCNGC 2 cut(s) 770, 893
GsuI CTGGAG 1 cut(s) 581
HaeIII GGCC 1 cut(s) 259
HapII CCGG 1 cut(s) 837
Hin1II CATG 6 cut(s) 106, 175, 229, 271, 653, 875
HinfI GANTC 2 cut(s) 164, 175
HpaII CCGG 1 cut(s) 837
HphI GGTGA 3 cut(s) 218, 430, 806
Hpy166II GTNNAC 1 cut(s) 473
Hpy188I TCNGA 1 cut(s) 163
Hpy188III TCNNGA 5 cut(s) 73, 172, 434, 466, 914
Hpy8I GTNNAC 1 cut(s) 473
HpyAV CCTTC 3 cut(s) 404, 572, 686
HpyCH4V TGCA 2 cut(s) 113, 769
HpyF10VI GCNNNNNNNGC 3 cut(s) 119, 518, 901
HpyF3I CTNAG 4 cut(s) 211, 236, 262, 276
Hsp92II CATG 6 cut(s) 106, 175, 229, 271, 653, 875
Kzo9I GATC 7 cut(s) 25, 138, 420, 628, 637, 775, 853
LmnI GCTCC 1 cut(s) 600
Lsp1109I GCAGC 2 cut(s) 781, 879
LweI GCATC 4 cut(s) 28, 100, 499, 530
MaeI CTAG 2 cut(s) 98, 458
MaeIII GTNAC 2 cut(s) 206, 463
MalI GATC 7 cut(s) 27, 140, 422, 630, 639, 777, 855
MboI GATC 7 cut(s) 25, 138, 420, 628, 637, 775, 853
MboII GAAGA 3 cut(s) 37, 229, 824
MfeI CAATTG 1 cut(s) 285
MluCI AATT 9 cut(s) 8, 16, 55, 127, 199, 285, 315, 655, 728
MlyI GAGTC 1 cut(s) 173
MseI TTAA 3 cut(s) 590, 662, 831
MspI CCGG 1 cut(s) 837
MunI CAATTG 1 cut(s) 285
Mva1269I GAATGC 1 cut(s) 679
MvnI CGCG 1 cut(s) 435
MwoI GCNNNNNNNGC 3 cut(s) 119, 518, 901
NdeII GATC 7 cut(s) 25, 138, 420, 628, 637, 775, 853
NlaIII CATG 6 cut(s) 106, 175, 229, 271, 653, 875
NmuCI GTSAC 2 cut(s) 206, 463
NruI TCGCGA 1 cut(s) 435
NspI RCATGY 2 cut(s) 106, 875
PagI TCATGA 1 cut(s) 171
PciI ACATGT 1 cut(s) 102
PctI GAATGC 1 cut(s) 679
PfeI GAWTC 1 cut(s) 175
PkrI GCNGC 2 cut(s) 771, 894
PleI GAGTC 1 cut(s) 172
PpsI GAGTC 1 cut(s) 172
PscI ACATGT 1 cut(s) 102
PspPI GGNCC 1 cut(s) 258
PstNI CAGNNNCTG 1 cut(s) 512
RruI TCGCGA 1 cut(s) 435
RsaI GTAC 3 cut(s) 95, 472, 870
RsaNI GTAC 3 cut(s) 94, 471, 869
SaqAI TTAA 3 cut(s) 590, 662, 831
SatI GCNGC 2 cut(s) 770, 893
Sau3AI GATC 7 cut(s) 25, 138, 420, 628, 637, 775, 853
Sau96I GGNCC 1 cut(s) 258
SchI GAGTC 1 cut(s) 173
SetI ASST 8 cut(s) 99, 208, 381, 403, 453, 459, 706, 894
SfaNI GCATC 4 cut(s) 28, 100, 499, 530
SfcI CTRYAG 2 cut(s) 513, 699
Sse9I AATT 9 cut(s) 8, 16, 55, 127, 199, 285, 315, 655, 728
SsiI CCGC 2 cut(s) 488, 549
SspMI CTAG 2 cut(s) 98, 458
TaqI TCGA 2 cut(s) 36, 423
TasI AATT 9 cut(s) 8, 16, 55, 127, 199, 285, 315, 655, 728
TatI WGTACW 1 cut(s) 470
TfiI GAWTC 1 cut(s) 175
Tru1I TTAA 3 cut(s) 590, 662, 831
Tru9I TTAA 3 cut(s) 590, 662, 831
TscAI CASTG 1 cut(s) 648
TseFI GTSAC 2 cut(s) 206, 463
TseI GCWGC 2 cut(s) 769, 892
Tsp45I GTSAC 2 cut(s) 206, 463
TspDTI ATGAA 6 cut(s) 167, 290, 377, 532, 542, 721
TspRI CASTG 1 cut(s) 648
XapI RAATTY 2 cut(s) 127, 728
XceI RCATGY 2 cut(s) 106, 875
XspI CTAG 2 cut(s) 98, 458
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.