Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr5

Orthogroup ID

OG0029271

Physical Location & Seq

Genomic Coordinates Reverse (-)

14498916 .. 14499596

Gene Structure 681 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 603 bp

ATGGCTACCAAATTTGTACCACGTGGCAAAAAAAAAAATTTATCTTCTTCCCCAACCCATTCCTCTTCCTTGCAACCCAAACACCTCATCCCCCATCCCACCCAAAACCCCAAAAAACCCAGTTGTTCACCTCCCCTCCCATCCAAAATACCCACCACAAACTTCTCTGACACCGCCGCCACCATCTTCTCCCTCATCAGAGCTCCGCCACGCCCTGTGACCAAATCGAGATTTGGAACAACCTCATCGGCGCCGTCGACCCAACTGGTGAGCTTGGTCCTCTGTGCGCTTAGAAGTCGGGACTCCAACAATGTCCTTCAATTCGCCGGATTGGAAGAGCTCGCTAAGCTTGAAGACCATGAAGGATGCGGTAGAACCGATGCCAAGGCCGAGGACCATTCCCGATTTGACGTACTCGACTGCCTTGTCGGCGACGAGCTTCTTGAGGCATTGTGGGGGGAGAGGAGGGACAGGGAGGAGGAAGCCATTGGAGAGGTGGAGGGAGAAGTGGGTCGGGGGTTGCAGAAAGGAAAGGGGGAAGGAAGGGGATCTGGGTGTGGGTTTGGGTTTTGTTTTTTTTTTTTTTTTTTTTCTTCTAAATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0008194 GO:0016740 GO:0016757 GO:0016758 GO:0035251 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0046527 GO:0047254 GO:0080043 GO:0080044

KEGG Pathways

Metabolic & Signaling

ko00140 ko00380 ko00402 ko00830 ko00908 ko00980 ko01100 ko01110 ko04913 ko05204 map00140 map00380 map00402 map00830 map00908 map00980 map01100 map01110 map04913 map05204

Pfam Domains

Protein Families

UDPGT

Protein Analysis

201

Amino Acids

21.78

Weight (kDa)

8.55

Isoelectric Point (pI)

45.26

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0029271)

Species	Orthologous Gene IDs
pyrus_communis	pycom05g11040
rosa_samantha	Rh4BG393800

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	425
AccB1I	GGYRCC	1 cut(s)	250
AccI	GTMKAC	1 cut(s)	257
AciI	CCGC	4 cut(s)	174, 177, 206, 369
AclWI	GGATC	1 cut(s)	556
AcsI	RAATTY	2 cut(s)	11, 37
AcvI	CACGTG	1 cut(s)	23
AcyI	GRCGYC	1 cut(s)	251
AfaI	GTAC	2 cut(s)	18, 414
AgsI	TTSAA	2 cut(s)	320, 353
AluBI	AGCT	5 cut(s)	203, 273, 340, 349, 439
AluI	AGCT	5 cut(s)	203, 273, 340, 349, 439
Alw21I	GWGCWC	2 cut(s)	205, 342
AlwI	GGATC	1 cut(s)	556
AoxI	GGCC	1 cut(s)	387
ApoI	RAATTY	2 cut(s)	11, 37
AspLEI	GCGC	2 cut(s)	253, 289
AspS9I	GGNCC	2 cut(s)	277, 394
AsuHPI	GGTGA	2 cut(s)	120, 280
AvaII	GGWCC	2 cut(s)	277, 394
BanI	GGYRCC	1 cut(s)	250
BanII	GRGCYC	2 cut(s)	205, 342
BbrPI	CACGTG	1 cut(s)	23
BbsI	GAAGAC	1 cut(s)	360
Bbv12I	GWGCWC	2 cut(s)	205, 342
BccI	CCATC	3 cut(s)	102, 148, 191
BceAI	ACGGC	1 cut(s)	238
BfoI	RGCGCY	1 cut(s)	254
BglI	GCCNNNNNGGC	1 cut(s)	429
BisI	GCNGC	1 cut(s)	177
BlpI	GCTNAGC	1 cut(s)	345
BlsI	GCNGC	1 cut(s)	178
Bme18I	GGWCC	2 cut(s)	277, 394
BmgT120I	GGNCC	2 cut(s)	277, 394
BmiI	GGNNCC	1 cut(s)	252
BmrI	ACTGGG	1 cut(s)	114
BmsI	GCATC	2 cut(s)	356, 370
BmuI	ACTGGG	1 cut(s)	114
BpiI	GAAGAC	1 cut(s)	360
Bpu1102I	GCTNAGC	1 cut(s)	345
BpuEI	CTTGAG	1 cut(s)	464
BsaAI	YACGTR	1 cut(s)	23
BsaHI	GRCGYC	1 cut(s)	251
BsaJI	CCNNGG	2 cut(s)	384, 390
BsaXI	ACNNNNNCTCC	2 cut(s)	120, 150
Bse1I	ACTGG	2 cut(s)	120, 270
BseDI	CCNNGG	2 cut(s)	384, 390
BseGI	GGATG	4 cut(s)	87, 94, 140, 371
BseNI	ACTGG	2 cut(s)	120, 270
BseRI	GAGGAG	2 cut(s)	478, 491
BshFI	GGCC	1 cut(s)	389
BshNI	GGYRCC	1 cut(s)	250
BsiHKAI	GWGCWC	2 cut(s)	205, 342
BsiSI	CCGG	1 cut(s)	327
BslFI	GGGAC	2 cut(s)	314, 482
BsmFI	GGGAC	2 cut(s)	314, 482
BsnI	GGCC	1 cut(s)	389
Bsp1286I	GDGCHC	2 cut(s)	205, 342
Bsp143I	GATC	1 cut(s)	548
Bsp1720I	GCTNAGC	1 cut(s)	345
BspACI	CCGC	4 cut(s)	174, 177, 206, 369
BspANI	GGCC	1 cut(s)	389
BspLI	GGNNCC	1 cut(s)	252
BspPI	GGATC	1 cut(s)	556
BspQI	GCTCTTC	1 cut(s)	330
BspT107I	GGYRCC	1 cut(s)	250
BsrI	ACTGG	2 cut(s)	120, 270
BssECI	CCNNGG	2 cut(s)	384, 390
BssMI	GATC	1 cut(s)	548
BssNI	GRCGYC	1 cut(s)	251
BssT1I	CCWWGG	1 cut(s)	384
Bst6I	CTCTTC	2 cut(s)	70, 330
BstACI	GRCGYC	1 cut(s)	251
BstBAI	YACGTR	1 cut(s)	23
BstC8I	GCNNGC	1 cut(s)	342
BstDEI	CTNAG	2 cut(s)	290, 345
BstF5I	GGATG	4 cut(s)	87, 94, 140, 371
BstH2I	RGCGCY	1 cut(s)	254
BstHHI	GCGC	2 cut(s)	253, 289
BstKTI	GATC	1 cut(s)	551
BstMBI	GATC	1 cut(s)	548
BstMWI	GCNNNNNNNGC	2 cut(s)	346, 429
BstV2I	GAAGAC	1 cut(s)	360
BstX2I	RGATCY	1 cut(s)	548
BstYI	RGATCY	1 cut(s)	548
BsuRI	GGCC	1 cut(s)	389
BtsCI	GGATG	4 cut(s)	87, 94, 140, 371
Cac8I	GCNNGC	1 cut(s)	342
CfoI	GCGC	2 cut(s)	253, 289
Cfr13I	GGNCC	2 cut(s)	277, 394
Csp6I	GTAC	2 cut(s)	17, 413
CviAII	CATG	1 cut(s)	359
CviJI	RGCY	8 cut(s)	5, 203, 273, 340, 349, 389, 439, 485
CviKI_1	RGCY	8 cut(s)	5, 203, 273, 340, 349, 389, 439, 485
CviQI	GTAC	2 cut(s)	17, 413
DdeI	CTNAG	2 cut(s)	290, 345
DinI	GGCGCC	1 cut(s)	252
DpnI	GATC	1 cut(s)	550
DpnII	GATC	1 cut(s)	548
DrdI	GACNNNNNNGTC	1 cut(s)	425
DseDI	GACNNNNNNGTC	1 cut(s)	425
Eam1104I	CTCTTC	2 cut(s)	70, 330
EarI	CTCTTC	2 cut(s)	70, 330
EciI	GGCGGA	1 cut(s)	195
Ecl136II	GAGCTC	2 cut(s)	203, 340
Eco130I	CCWWGG	1 cut(s)	384
Eco24I	GRGCYC	2 cut(s)	205, 342
Eco47I	GGWCC	2 cut(s)	277, 394
Eco53kI	GAGCTC	2 cut(s)	203, 340
Eco72I	CACGTG	1 cut(s)	23
EcoICRI	GAGCTC	2 cut(s)	203, 340
EcoT14I	CCWWGG	1 cut(s)	384
EcoT38I	GRGCYC	2 cut(s)	205, 342
EgeI	GGCGCC	1 cut(s)	252
EheI	GGCGCC	1 cut(s)	252
ErhI	CCWWGG	1 cut(s)	384
FaeI	CATG	1 cut(s)	362
FaiI	YATR	1 cut(s)	360
FaqI	GGGAC	2 cut(s)	314, 482
FatI	CATG	1 cut(s)	358
FblI	GTMKAC	1 cut(s)	257
Fnu4HI	GCNGC	1 cut(s)	177
FokI	GGATG	4 cut(s)	74, 81, 127, 378
FriOI	GRGCYC	2 cut(s)	205, 342
Fsp4HI	GCNGC	1 cut(s)	177
GlaI	GCGC	2 cut(s)	252, 288
GluI	GCNGC	1 cut(s)	177
HaeII	RGCGCY	1 cut(s)	254
HaeIII	GGCC	1 cut(s)	389
HapII	CCGG	1 cut(s)	327
HhaI	GCGC	2 cut(s)	253, 289
Hin1I	GRCGYC	1 cut(s)	251
Hin1II	CATG	1 cut(s)	362
Hin6I	GCGC	2 cut(s)	251, 287
HinP1I	GCGC	2 cut(s)	251, 287
HincII	GTYRAC	1 cut(s)	258
HindII	GTYRAC	1 cut(s)	258
HindIII	AAGCTT	1 cut(s)	347
HinfI	GANTC	1 cut(s)	302
HpaII	CCGG	1 cut(s)	327
HphI	GGTGA	2 cut(s)	120, 280
Hpy166II	GTNNAC	2 cut(s)	128, 258
Hpy188I	TCNGA	2 cut(s)	169, 200
Hpy188III	TCNNGA	4 cut(s)	228, 299, 402, 443
Hpy8I	GTNNAC	2 cut(s)	128, 258
Hpy99I	CGWCG	2 cut(s)	259, 437
HpyAV	CCTTC	4 cut(s)	326, 356, 533, 537
HpyCH4IV	ACGT	2 cut(s)	22, 411
HpyCH4V	TGCA	2 cut(s)	73, 523
HpyF10VI	GCNNNNNNNGC	2 cut(s)	346, 429
HpyF3I	CTNAG	2 cut(s)	290, 345
HpySE526I	ACGT	2 cut(s)	22, 411
Hsp92I	GRCGYC	1 cut(s)	251
Hsp92II	CATG	1 cut(s)	362
HspAI	GCGC	2 cut(s)	251, 287
KasI	GGCGCC	1 cut(s)	250
Kzo9I	GATC	1 cut(s)	548
LguI	GCTCTTC	1 cut(s)	330
LmnI	GCTCC	1 cut(s)	208
LpnPI	CCDG	6 cut(s)	133, 228, 251, 340, 457, 537
LweI	GCATC	2 cut(s)	356, 370
MaeII	ACGT	2 cut(s)	22, 411
MaeIII	GTNAC	1 cut(s)	217
MalI	GATC	1 cut(s)	550
MboI	GATC	1 cut(s)	548
MboII	GAAGA	7 cut(s)	36, 39, 57, 178, 347, 365, 585
MflI	RGATCY	1 cut(s)	548
MhlI	GDGCHC	2 cut(s)	205, 342
MluCI	AATT	3 cut(s)	11, 37, 320
Mly113I	GGCGCC	1 cut(s)	251
MlyI	GAGTC	1 cut(s)	296
MmeI	TCCRAC	1 cut(s)	330
MspI	CCGG	1 cut(s)	327
MwoI	GCNNNNNNNGC	2 cut(s)	346, 429
NarI	GGCGCC	1 cut(s)	251
NdeII	GATC	1 cut(s)	548
NlaIII	CATG	1 cut(s)	362
NlaIV	GGNNCC	1 cut(s)	252
NmeAIII	GCCGAG	1 cut(s)	415
NmuCI	GTSAC	1 cut(s)	217
PciSI	GCTCTTC	1 cut(s)	330
PcsI	WCGNNNNNNNCGW	1 cut(s)	254
PkrI	GCNGC	1 cut(s)	178
PleI	GAGTC	1 cut(s)	296
PluTI	GGCGCC	1 cut(s)	254
PmaCI	CACGTG	1 cut(s)	23
PmlI	CACGTG	1 cut(s)	23
PpsI	GAGTC	1 cut(s)	296
Ppu21I	YACGTR	1 cut(s)	23
Psp124BI	GAGCTC	2 cut(s)	205, 342
PspCI	CACGTG	1 cut(s)	23
PspN4I	GGNNCC	1 cut(s)	252
PspPI	GGNCC	2 cut(s)	277, 394
PsuI	RGATCY	1 cut(s)	548
RsaI	GTAC	2 cut(s)	18, 414
RsaNI	GTAC	2 cut(s)	17, 413
SacI	GAGCTC	2 cut(s)	205, 342
SalI	GTCGAC	1 cut(s)	256
SapI	GCTCTTC	1 cut(s)	330
SatI	GCNGC	1 cut(s)	177
Sau3AI	GATC	1 cut(s)	548
Sau96I	GGNCC	2 cut(s)	277, 394
SchI	GAGTC	1 cut(s)	296
SduI	GDGCHC	2 cut(s)	205, 342
SfaNI	GCATC	2 cut(s)	356, 370
SfoI	GGCGCC	1 cut(s)	252
SinI	GGWCC	2 cut(s)	277, 394
SmlI	CTYRAG	1 cut(s)	443
SmoI	CTYRAG	1 cut(s)	443
Sse9I	AATT	3 cut(s)	11, 37, 320
SsiI	CCGC	4 cut(s)	174, 177, 206, 369
SspDI	GGCGCC	1 cut(s)	250
SstI	GAGCTC	2 cut(s)	205, 342
StyI	CCWWGG	1 cut(s)	384
TaiI	ACGT	2 cut(s)	25, 414
TaqI	TCGA	3 cut(s)	227, 257, 417
TasI	AATT	3 cut(s)	11, 37, 320
TauI	GCSGC	1 cut(s)	179
TseFI	GTSAC	1 cut(s)	217
Tsp45I	GTSAC	1 cut(s)	217
TspDTI	ATGAA	1 cut(s)	375
VpaK11BI	GGWCC	2 cut(s)	277, 394
XapI	RAATTY	2 cut(s)	11, 37
XcmI	CCANNNNNNNNNTGG	1 cut(s)	493
XmiI	GTMKAC	1 cut(s)	257

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.