Rh4BG393800

No description available

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr4B
Physical Location & Seq
Forward (+)
54554672 .. 54554980
309 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh4BG393800.1

Sequence Viewer

Length: 309 bp
ATGCTTTGCTACACAATCCGCACCCTCAACCAAGTTTTCGAGCTTTCTGACCGTGAATATCCAACAAAATGGCACAATCTAAACTGGCATAGCAAGCCCACTACCACCCAAATGCTTAACAAGCTTGGGTTCATCAACAATCACTACAAATTTCCTGCAAGCCCCTCAACCATCTTCTCTCTCAGGAGCGCCCCACCTCGGCCTTTGAATAAAATGAGGTGGGGATCGACCTCATCAGCGCCATCTATTGCAAGATCAAGAACAGATGTGAATCGAGGTCCGACAATGGATCACCGATACGGTGGTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

102

Amino Acids

11.78

Weight (kDa)

10.48

Isoelectric Point (pI)

59.47

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0029271)

Species Orthologous Gene IDs
pyrus_communis pycom05g11040
rosa_samantha Rh4BG393800

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 19
AclWI GGATC 2 cut(s) 232, 297
AcsI RAATTY 1 cut(s) 149
AfiI CCNNNNNNNGG 1 cut(s) 198
AgsI TTSAA 1 cut(s) 208
AluBI AGCT 2 cut(s) 43, 124
AluI AGCT 2 cut(s) 43, 124
AlwI GGATC 2 cut(s) 232, 297
AoxI GGCC 1 cut(s) 200
ApoI RAATTY 1 cut(s) 149
AspLEI GCGC 2 cut(s) 191, 241
AspS9I GGNCC 1 cut(s) 278
AsuHPI GGTGA 1 cut(s) 284
AvaII GGWCC 1 cut(s) 278
BaeI ACNNNNGTAYC 1 cut(s) 289
BccI CCATC 2 cut(s) 179, 250
BfoI RGCGCY 2 cut(s) 192, 242
Bme18I GGWCC 1 cut(s) 278
BmgT120I GGNCC 1 cut(s) 278
BsaBI GATNNNNATC 1 cut(s) 270
BsaJI CCNNGG 1 cut(s) 197
Bsc4I CCNNNNNNNGG 1 cut(s) 198
Bse1I ACTGG 1 cut(s) 89
Bse8I GATNNNNATC 1 cut(s) 270
BseDI CCNNGG 1 cut(s) 197
BseJI GATNNNNATC 1 cut(s) 270
BseLI CCNNNNNNNGG 1 cut(s) 198
BseMII CTCAG 1 cut(s) 196
BseNI ACTGG 1 cut(s) 89
BshFI GGCC 1 cut(s) 202
BslI CCNNNNNNNGG 1 cut(s) 198
BsnI GGCC 1 cut(s) 202
Bsp143I GATC 3 cut(s) 224, 254, 289
BspACI CCGC 1 cut(s) 19
BspANI GGCC 1 cut(s) 202
BspCNI CTCAG 1 cut(s) 195
BspPI GGATC 2 cut(s) 232, 297
BsrI ACTGG 1 cut(s) 89
BssECI CCNNGG 1 cut(s) 197
BssMI GATC 3 cut(s) 224, 254, 289
Bst4CI ACNGT 2 cut(s) 53, 302
BstC8I GCNNGC 2 cut(s) 95, 160
BstDEI CTNAG 1 cut(s) 182
BstH2I RGCGCY 2 cut(s) 192, 242
BstHHI GCGC 2 cut(s) 191, 241
BstKTI GATC 3 cut(s) 227, 257, 292
BstMBI GATC 3 cut(s) 224, 254, 289
BstMWI GCNNNNNNNGC 2 cut(s) 94, 121
BstXI CCANNNNNNTGG 1 cut(s) 69
BsuRI GGCC 1 cut(s) 202
Cac8I GCNNGC 2 cut(s) 95, 160
CfoI GCGC 2 cut(s) 191, 241
Cfr13I GGNCC 1 cut(s) 278
CviJI RGCY 5 cut(s) 43, 97, 124, 162, 202
CviKI_1 RGCY 5 cut(s) 43, 97, 124, 162, 202
DdeI CTNAG 1 cut(s) 182
DpnI GATC 3 cut(s) 226, 256, 291
DpnII GATC 3 cut(s) 224, 254, 289
Eco47I GGWCC 1 cut(s) 278
FaiI YATR 1 cut(s) 90
GlaI GCGC 2 cut(s) 190, 240
HaeII RGCGCY 2 cut(s) 192, 242
HaeIII GGCC 1 cut(s) 202
HhaI GCGC 2 cut(s) 191, 241
Hin6I GCGC 2 cut(s) 189, 239
HinP1I GCGC 2 cut(s) 189, 239
HindIII AAGCTT 1 cut(s) 122
HinfI GANTC 1 cut(s) 271
HphI GGTGA 1 cut(s) 284
Hpy188I TCNGA 2 cut(s) 49, 282
Hpy188III TCNNGA 2 cut(s) 184, 258
HpyCH4III ACNGT 2 cut(s) 53, 302
HpyCH4V TGCA 2 cut(s) 158, 251
HpyF10VI GCNNNNNNNGC 2 cut(s) 94, 121
HpyF3I CTNAG 1 cut(s) 182
HspAI GCGC 2 cut(s) 189, 239
Kzo9I GATC 3 cut(s) 224, 254, 289
LmnI GCTCC 1 cut(s) 186
LpnPI CCDG 3 cut(s) 70, 168, 169
MalI GATC 3 cut(s) 226, 256, 291
MboI GATC 3 cut(s) 224, 254, 289
MboII GAAGA 1 cut(s) 166
MluCI AATT 1 cut(s) 149
MmeI TCCRAC 2 cut(s) 86, 305
MnlI CCTC 6 cut(s) 35, 175, 207, 210, 241, 269
MseI TTAA 1 cut(s) 117
MslI CAYNNNNRTG 1 cut(s) 110
MwoI GCNNNNNNNGC 2 cut(s) 94, 121
NdeII GATC 3 cut(s) 224, 254, 289
NmeAIII GCCGAG 1 cut(s) 178
PfeI GAWTC 1 cut(s) 271
PspPI GGNCC 1 cut(s) 278
RseI CAYNNNNRTG 1 cut(s) 110
SaqAI TTAA 1 cut(s) 117
Sau3AI GATC 3 cut(s) 224, 254, 289
Sau96I GGNCC 1 cut(s) 278
SetI ASST 6 cut(s) 45, 126, 199, 221, 233, 280
SinI GGWCC 1 cut(s) 278
SmiMI CAYNNNNRTG 1 cut(s) 110
Sse9I AATT 1 cut(s) 149
SsiI CCGC 1 cut(s) 19
TaaI ACNGT 2 cut(s) 53, 302
TaqI TCGA 3 cut(s) 39, 227, 274
TasI AATT 1 cut(s) 149
TfiI GAWTC 1 cut(s) 271
Tru1I TTAA 1 cut(s) 117
Tru9I TTAA 1 cut(s) 117
TspDTI ATGAA 1 cut(s) 121
VpaK11BI GGWCC 1 cut(s) 278
XapI RAATTY 1 cut(s) 149
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.