Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr5

Orthogroup ID

OG0028440

Physical Location & Seq

Genomic Coordinates Reverse (-)

14654390 .. 14655330

Gene Structure 941 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 288 bp

ATGCTTCTATCACGAGGCACCATGGATTTGCATAATGAGCTGGAAGAATGTGTTGCAAATTTTGTTGGGAAACCTGCTGCTATAGTTTTCGGAATGGGTTATGTCACAAACTCTGCTATCCTTCCTGTTGTGATGGGGAAGGGAGGCTTGATTGTTAGTGATTCTTTGAACCACAACTCCATTGTCAATGGCGCAAGAGAATCTGGAGCTAGAGTTTGTGTTTTCCAACACAATAGTGGATTACCAAAAGGAGCTCATCAAGTATTCTGCGAGCACGATAGACATTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0002178 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005783 GO:0005789 GO:0006066 GO:0006629 GO:0006643 GO:0006644 GO:0006665 GO:0006667 GO:0006670 GO:0006672 GO:0006684 GO:0006686 GO:0006793 GO:0006796 GO:0006807 GO:0008150 GO:0008152 GO:0008610 GO:0008654 GO:0009058 GO:0009893 GO:0009894 GO:0009896 GO:0009987 GO:0010506 GO:0010508 GO:0012505 GO:0016020 GO:0016239 GO:0016241 GO:0017059 GO:0019222 GO:0019637 GO:0019751 GO:0030148 GO:0031211 GO:0031323 GO:0031325 GO:0031329 GO:0031331 GO:0031984 GO:0032991 GO:0034311 GO:0034312 GO:0034641 GO:0042175 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043603 GO:0043604 GO:0044237 GO:0044238 GO:0044249 GO:0044255 GO:0044271 GO:0044281 GO:0044283 GO:0044422 GO:0044424 GO:0044425 GO:0044432 GO:0044444 GO:0044446 GO:0044464 GO:0046165 GO:0046173 GO:0046467 GO:0046511 GO:0046512 GO:0046513 GO:0046519 GO:0046520 GO:0048518 GO:0048522 GO:0050789 GO:0050794 GO:0065007 GO:0071704 GO:0090407 GO:0097164 GO:0098796 GO:0098827 GO:1901564 GO:1901566 GO:1901576 GO:1901615 GO:1901617 GO:1902494 GO:1904502 GO:1904504 GO:1905961 GO:1990234

KEGG Pathways

Metabolic & Signaling

ko00600 ko01100 ko04071 ko04138 map00600 map01100 map04071 map04138

Pfam Domains

Protein Families

Aminotran_1_2

Protein Analysis

96

Amino Acids

10.16

Weight (kDa)

6.57

Isoelectric Point (pI)

21.17

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Aminotran_1_2	PF00155	6 - 76	1.1e-08	Aminotransferase class I and II

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0028440)

Species	Orthologous Gene IDs
malus_domestica	MD09G1269700.v1.1
pyrus_communis	pycom05g11160

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	82
AccB1I	GGYRCC	1 cut(s)	17
AcsI	RAATTY	1 cut(s)	58
AgsI	TTSAA	1 cut(s)	169
AleI	CACNNNNGTG	1 cut(s)	234
AloI	GAACNNNNNNTCC	2 cut(s)	161, 193
AluBI	AGCT	3 cut(s)	40, 209, 254
AluI	AGCT	3 cut(s)	40, 209, 254
Alw21I	GWGCWC	2 cut(s)	256, 276
ApeKI	GCWGC	1 cut(s)	77
ApoI	RAATTY	1 cut(s)	58
AspLEI	GCGC	1 cut(s)	194
BanI	GGYRCC	1 cut(s)	17
BanII	GRGCYC	1 cut(s)	256
BauI	CACGAG	1 cut(s)	12
Bbv12I	GWGCWC	2 cut(s)	256, 276
BbvI	GCAGC	1 cut(s)	64
BccI	CCATC	1 cut(s)	127
BfaI	CTAG	1 cut(s)	210
BfmI	CTRYAG	1 cut(s)	81
BfuAI	ACCTGC	1 cut(s)	82
BisI	GCNGC	1 cut(s)	78
BlsI	GCNGC	1 cut(s)	79
BmiI	GGNNCC	1 cut(s)	19
BpmI	CTGGAG	1 cut(s)	225
BsaJI	CCNNGG	1 cut(s)	21
BsaXI	ACNNNNNCTCC	4 cut(s)	161, 191, 198, 228
BseDI	CCNNGG	1 cut(s)	21
BseXI	GCAGC	1 cut(s)	64
BshNI	GGYRCC	1 cut(s)	17
BsiHKAI	GWGCWC	2 cut(s)	256, 276
Bsp1286I	GDGCHC	2 cut(s)	256, 276
Bsp19I	CCATGG	1 cut(s)	21
BspLI	GGNNCC	1 cut(s)	19
BspMI	ACCTGC	1 cut(s)	82
BspT107I	GGYRCC	1 cut(s)	17
BssECI	CCNNGG	1 cut(s)	21
BssSI	CACGAG	1 cut(s)	12
BssT1I	CCWWGG	1 cut(s)	21
Bst2BI	CACGAG	1 cut(s)	12
BstC8I	GCNNGC	1 cut(s)	272
BstDSI	CCRYGG	1 cut(s)	21
BstHHI	GCGC	1 cut(s)	194
BstMWI	GCNNNNNNNGC	1 cut(s)	37
BstSFI	CTRYAG	1 cut(s)	81
BstV1I	GCAGC	1 cut(s)	64
BtgI	CCRYGG	1 cut(s)	21
BveI	ACCTGC	1 cut(s)	82
Cac8I	GCNNGC	1 cut(s)	272
CfoI	GCGC	1 cut(s)	194
CviAII	CATG	1 cut(s)	22
CviJI	RGCY	4 cut(s)	40, 147, 209, 254
CviKI_1	RGCY	4 cut(s)	40, 147, 209, 254
Ecl136II	GAGCTC	1 cut(s)	254
Eco130I	CCWWGG	1 cut(s)	21
Eco24I	GRGCYC	1 cut(s)	256
Eco53kI	GAGCTC	1 cut(s)	254
EcoICRI	GAGCTC	1 cut(s)	254
EcoT14I	CCWWGG	1 cut(s)	21
EcoT38I	GRGCYC	1 cut(s)	256
ErhI	CCWWGG	1 cut(s)	21
FaeI	CATG	1 cut(s)	25
FaiI	YATR	4 cut(s)	23, 33, 83, 102
FalI	AAGNNNNNCTT	2 cut(s)	131, 163
FatI	CATG	1 cut(s)	21
Fnu4HI	GCNGC	1 cut(s)	78
FriOI	GRGCYC	1 cut(s)	256
Fsp4HI	GCNGC	1 cut(s)	78
FspBI	CTAG	1 cut(s)	210
GlaI	GCGC	1 cut(s)	193
GluI	GCNGC	1 cut(s)	78
GsuI	CTGGAG	1 cut(s)	225
HhaI	GCGC	1 cut(s)	194
Hin1II	CATG	1 cut(s)	25
Hin6I	GCGC	1 cut(s)	192
HinP1I	GCGC	1 cut(s)	192
HinfI	GANTC	2 cut(s)	161, 200
Hpy188I	TCNGA	1 cut(s)	92
Hpy188III	TCNNGA	2 cut(s)	12, 204
HpyAV	CCTTC	2 cut(s)	131, 133
HpyCH4V	TGCA	2 cut(s)	31, 56
HpyF10VI	GCNNNNNNNGC	1 cut(s)	37
Hsp92II	CATG	1 cut(s)	25
HspAI	GCGC	1 cut(s)	192
LmnI	GCTCC	2 cut(s)	206, 251
LpnPI	CCDG	4 cut(s)	26, 87, 138, 189
Lsp1109I	GCAGC	1 cut(s)	64
MaeI	CTAG	1 cut(s)	210
MaeIII	GTNAC	1 cut(s)	103
MboII	GAAGA	1 cut(s)	56
MhlI	GDGCHC	2 cut(s)	256, 276
MluCI	AATT	1 cut(s)	58
MmeI	TCCRAC	1 cut(s)	250
MnlI	CCTC	2 cut(s)	8, 137
MslI	CAYNNNNRTG	1 cut(s)	234
MwoI	GCNNNNNNNGC	1 cut(s)	37
NcoI	CCATGG	1 cut(s)	21
NlaIII	CATG	1 cut(s)	25
NlaIV	GGNNCC	1 cut(s)	19
NmuCI	GTSAC	1 cut(s)	103
OliI	CACNNNNGTG	1 cut(s)	234
PfeI	GAWTC	2 cut(s)	161, 200
PkrI	GCNGC	1 cut(s)	79
Psp124BI	GAGCTC	1 cut(s)	256
PspN4I	GGNNCC	1 cut(s)	19
RseI	CAYNNNNRTG	1 cut(s)	234
SacI	GAGCTC	1 cut(s)	256
SatI	GCNGC	1 cut(s)	78
SduI	GDGCHC	2 cut(s)	256, 276
SetI	ASST	4 cut(s)	42, 76, 211, 256
SfcI	CTRYAG	1 cut(s)	81
SmiMI	CAYNNNNRTG	1 cut(s)	234
Sse9I	AATT	1 cut(s)	58
SspMI	CTAG	1 cut(s)	210
SstI	GAGCTC	1 cut(s)	256
StyI	CCWWGG	1 cut(s)	21
TasI	AATT	1 cut(s)	58
TfiI	GAWTC	2 cut(s)	161, 200
TseFI	GTSAC	1 cut(s)	103
TseI	GCWGC	1 cut(s)	77
Tsp45I	GTSAC	1 cut(s)	103
XapI	RAATTY	1 cut(s)	58
XcmI	CCANNNNNNNNNTGG	1 cut(s)	233
XspI	CTAG	1 cut(s)	210

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.