Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr5

Orthogroup ID

OG0029273

Physical Location & Seq

Genomic Coordinates Forward (+)

16956364 .. 16957602

Gene Structure 1239 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom05g13390.4

Sequence Viewer

CDS Protein Promoter (2k)

Length: 462 bp

ATGCATCCTCAGTATTTTCCGCCGATGTTTGGGCACAAGACATTGACAGCTATCAGAAATAGAAACTCAGAGCCACTATGCTTTCTGATCTGCTATCTGATTCACTGTGCAGAAATACTTTATAGATCGGATTTCTTTCCTGGACTCGGGTGGATGCTGGATCGATCTACATGGGATGAGCTATCACCAAAATGGCCAAAGGGTCGACAATTTATACGGCCAGAAGTGTGCAGAACATATAATTTTGGAGAACACGGTTCTAGTCTGGGGCAGTTTTTCAAACAATATCTTGAGCCAATCAAGCTAAATGATGTCCCGGTTGACTGGAAATCAATGGATTTGAGCTACCTGATGGAGGTAATGGATGCTTTAATACTCTGGTCAGAATGCTCTTTCTTCTCATGTATAATCAATACATTTTTCAACCCGTTTGCAGGACAAGTATATAAAGCACTTTGCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0003827 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005768 GO:0005794 GO:0005802 GO:0006464 GO:0006486 GO:0006491 GO:0006807 GO:0006950 GO:0006970 GO:0006972 GO:0008150 GO:0008152 GO:0008194 GO:0008375 GO:0009058 GO:0009059 GO:0009100 GO:0009101 GO:0009628 GO:0009987 GO:0012505 GO:0016262 GO:0016740 GO:0016757 GO:0016758 GO:0019538 GO:0031410 GO:0031982 GO:0031984 GO:0034645 GO:0036211 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0043413 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044267 GO:0044422 GO:0044424 GO:0044431 GO:0044444 GO:0044446 GO:0044464 GO:0050896 GO:0070085 GO:0071704 GO:0097708 GO:0098791 GO:0140096 GO:0140103 GO:1901135 GO:1901137 GO:1901564 GO:1901566 GO:1901576

KEGG Pathways

Metabolic & Signaling

ko00510 ko00513 ko01100 map00510 map00513 map01100

Pfam Domains

Protein Families

GNT-I

Protein Analysis

154

Amino Acids

18.03

Weight (kDa)

6.4

Isoelectric Point (pI)

46.32

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0029273)

Species	Orthologous Gene IDs
pyrus_communis	pycom05g13390 pycom10g12130

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	205
AciI	CCGC	1 cut(s)	20
AclWI	GGATC	1 cut(s)	168
AcoI	YGGCCR	2 cut(s)	194, 218
AfiI	CCNNNNNNNGG	4 cut(s)	29, 146, 355, 434
AgsI	TTSAA	2 cut(s)	280, 424
AjnI	CCWGG	1 cut(s)	139
AluBI	AGCT	4 cut(s)	50, 181, 304, 345
AluI	AGCT	4 cut(s)	50, 181, 304, 345
AlwI	GGATC	1 cut(s)	168
Ama87I	CYCGRG	1 cut(s)	146
AoxI	GGCC	2 cut(s)	194, 218
AsuC2I	CCSGG	1 cut(s)	317
AsuHPI	GGTGA	1 cut(s)	177
AvaI	CYCGRG	1 cut(s)	146
BaeGI	GKGCMC	1 cut(s)	36
BalI	TGGCCA	1 cut(s)	196
BccI	CCATC	1 cut(s)	346
BceAI	ACGGC	1 cut(s)	233
BciT130I	CCWGG	1 cut(s)	141
BcnI	CCSGG	1 cut(s)	317
BfaI	CTAG	1 cut(s)	261
Bme1390I	CCNGG	2 cut(s)	141, 317
BmeT110I	CYCGRG	1 cut(s)	146
BmrFI	CCNGG	2 cut(s)	141, 317
BmsI	GCATC	3 cut(s)	13, 144, 355
BpuEI	CTTGAG	1 cut(s)	311
BpuMI	CCSGG	1 cut(s)	317
Bsa29I	ATCGAT	1 cut(s)	163
Bsc4I	CCNNNNNNNGG	4 cut(s)	29, 146, 355, 434
Bse1I	ACTGG	1 cut(s)	329
BseBI	CCWGG	1 cut(s)	141
BseCI	ATCGAT	1 cut(s)	163
BseGI	GGATG	4 cut(s)	4, 159, 181, 370
BseLI	CCNNNNNNNGG	4 cut(s)	29, 146, 355, 434
BseMII	CTCAG	2 cut(s)	23, 81
BseNI	ACTGG	1 cut(s)	329
BseSI	GKGCMC	1 cut(s)	36
BsgI	GTGCAG	2 cut(s)	129, 250
BshFI	GGCC	2 cut(s)	196, 220
BshVI	ATCGAT	1 cut(s)	163
BsiHKCI	CYCGRG	1 cut(s)	146
BsiSI	CCGG	1 cut(s)	317
BslFI	GGGAC	1 cut(s)	299
BslI	CCNNNNNNNGG	4 cut(s)	29, 146, 355, 434
BsmFI	GGGAC	1 cut(s)	299
BsmI	GAATGC	1 cut(s)	392
BsnI	GGCC	2 cut(s)	196, 220
BsoBI	CYCGRG	1 cut(s)	146
Bsp1286I	GDGCHC	1 cut(s)	36
Bsp143I	GATC	4 cut(s)	87, 125, 160, 164
BspACI	CCGC	1 cut(s)	20
BspANI	GGCC	2 cut(s)	196, 220
BspCNI	CTCAG	2 cut(s)	22, 80
BspDI	ATCGAT	1 cut(s)	163
BspPI	GGATC	1 cut(s)	168
BsrI	ACTGG	1 cut(s)	329
BssMI	GATC	4 cut(s)	87, 125, 160, 164
Bst2UI	CCWGG	1 cut(s)	141
Bst4CI	ACNGT	2 cut(s)	107, 257
BstDEI	CTNAG	2 cut(s)	9, 67
BstENI	CCTNNNNNAGG	1 cut(s)	353
BstF5I	GGATG	4 cut(s)	4, 159, 181, 370
BstKTI	GATC	4 cut(s)	90, 128, 163, 167
BstMBI	GATC	4 cut(s)	87, 125, 160, 164
BstMWI	GCNNNNNNNGC	1 cut(s)	301
BstNI	CCWGG	1 cut(s)	141
BstSCI	CCNGG	2 cut(s)	139, 315
BstSLI	GKGCMC	1 cut(s)	36
Bsu15I	ATCGAT	1 cut(s)	163
BsuRI	GGCC	2 cut(s)	196, 220
BsuTUI	ATCGAT	1 cut(s)	163
BtsCI	GGATG	4 cut(s)	4, 159, 181, 370
BtsIMutI	CAGTG	1 cut(s)	103
ClaI	ATCGAT	1 cut(s)	163
CviAII	CATG	2 cut(s)	171, 402
CviJI	RGCY	8 cut(s)	50, 73, 181, 196, 220, 295, 304, 345
CviKI_1	RGCY	8 cut(s)	50, 73, 181, 196, 220, 295, 304, 345
DdeI	CTNAG	2 cut(s)	9, 67
DpnI	GATC	4 cut(s)	89, 127, 162, 166
DpnII	GATC	4 cut(s)	87, 125, 160, 164
EaeI	YGGCCR	2 cut(s)	194, 218
EciI	GGCGGA	1 cut(s)	9
Eco88I	CYCGRG	1 cut(s)	146
EcoNI	CCTNNNNNAGG	1 cut(s)	353
EcoRII	CCWGG	1 cut(s)	139
EcoT22I	ATGCAT	1 cut(s)	6
FaeI	CATG	2 cut(s)	174, 405
FaqI	GGGAC	1 cut(s)	299
FatI	CATG	2 cut(s)	170, 401
FblI	GTMKAC	1 cut(s)	205
FokI	GGATG	3 cut(s)	166, 188, 377
FspBI	CTAG	1 cut(s)	261
HaeIII	GGCC	2 cut(s)	196, 220
HapII	CCGG	1 cut(s)	317
Hin1II	CATG	2 cut(s)	174, 405
HincII	GTYRAC	2 cut(s)	206, 322
HindII	GTYRAC	2 cut(s)	206, 322
HinfI	GANTC	2 cut(s)	100, 144
HpaII	CCGG	1 cut(s)	317
HphI	GGTGA	1 cut(s)	177
Hpy166II	GTNNAC	2 cut(s)	206, 322
Hpy188I	TCNGA	6 cut(s)	56, 70, 87, 99, 130, 385
Hpy188III	TCNNGA	1 cut(s)	290
Hpy8I	GTNNAC	2 cut(s)	206, 322
HpyCH4III	ACNGT	2 cut(s)	107, 257
HpyCH4V	TGCA	4 cut(s)	4, 110, 231, 434
HpyF10VI	GCNNNNNNNGC	1 cut(s)	301
HpyF3I	CTNAG	2 cut(s)	9, 67
Hsp92II	CATG	2 cut(s)	174, 405
Kzo9I	GATC	4 cut(s)	87, 125, 160, 164
LweI	GCATC	3 cut(s)	13, 144, 355
MaeI	CTAG	1 cut(s)	261
MalI	GATC	4 cut(s)	89, 127, 162, 166
MboI	GATC	4 cut(s)	87, 125, 160, 164
MboII	GAAGA	1 cut(s)	388
MhlI	GDGCHC	1 cut(s)	36
MlsI	TGGCCA	1 cut(s)	196
MluCI	AATT	2 cut(s)	209, 241
MluNI	TGGCCA	1 cut(s)	196
MlyI	GAGTC	1 cut(s)	138
MnlI	CCTC	2 cut(s)	18, 349
Mox20I	TGGCCA	1 cut(s)	196
Mph1103I	ATGCAT	1 cut(s)	6
MscI	TGGCCA	1 cut(s)	196
MseI	TTAA	1 cut(s)	371
MslI	CAYNNNNRTG	1 cut(s)	190
Msp20I	TGGCCA	1 cut(s)	196
MspI	CCGG	1 cut(s)	317
MspR9I	CCNGG	2 cut(s)	141, 317
Mva1269I	GAATGC	1 cut(s)	392
MvaI	CCWGG	1 cut(s)	141
MwoI	GCNNNNNNNGC	1 cut(s)	301
NciI	CCSGG	1 cut(s)	317
NdeII	GATC	4 cut(s)	87, 125, 160, 164
NlaIII	CATG	2 cut(s)	174, 405
NsiI	ATGCAT	1 cut(s)	6
PctI	GAATGC	1 cut(s)	392
PfeI	GAWTC	1 cut(s)	100
PfoI	TCCNGGA	1 cut(s)	139
PleI	GAGTC	1 cut(s)	138
PpsI	GAGTC	1 cut(s)	138
Psp6I	CCWGG	1 cut(s)	139
PspGI	CCWGG	1 cut(s)	139
RseI	CAYNNNNRTG	1 cut(s)	190
SalI	GTCGAC	1 cut(s)	204
SaqAI	TTAA	1 cut(s)	371
Sau3AI	GATC	4 cut(s)	87, 125, 160, 164
SchI	GAGTC	1 cut(s)	138
ScrFI	CCNGG	2 cut(s)	141, 317
SduI	GDGCHC	1 cut(s)	36
SetI	ASST	6 cut(s)	52, 183, 306, 347, 351, 360
SfaNI	GCATC	3 cut(s)	13, 144, 355
SmiMI	CAYNNNNRTG	1 cut(s)	190
SmlI	CTYRAG	1 cut(s)	290
SmoI	CTYRAG	1 cut(s)	290
Sse9I	AATT	2 cut(s)	209, 241
SsiI	CCGC	1 cut(s)	20
SspMI	CTAG	1 cut(s)	261
StyD4I	CCNGG	2 cut(s)	139, 315
TaaI	ACNGT	2 cut(s)	107, 257
TaqI	TCGA	2 cut(s)	163, 205
TasI	AATT	2 cut(s)	209, 241
TfiI	GAWTC	1 cut(s)	100
Tru1I	TTAA	1 cut(s)	371
Tru9I	TTAA	1 cut(s)	371
TscAI	CASTG	1 cut(s)	110
TspRI	CASTG	1 cut(s)	110
XagI	CCTNNNNNAGG	1 cut(s)	353
XmiI	GTMKAC	1 cut(s)	205
XspI	CTAG	1 cut(s)	261
Zsp2I	ATGCAT	1 cut(s)	6

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.