Belongs to the histone deacetylase family. HD Type 1 subfamily
Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.
| Species | Orthologous Gene IDs |
|---|---|
| malus_domestica | MD07G1094500.v1.1 |
| pyrus_communis | pycom05g14440 pycom05g14540 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AciI | CCGC | 1 cut(s) | 68 |
| AclWI | GGATC | 2 cut(s) | 149, 218 |
| AluBI | AGCT | 1 cut(s) | 144 |
| AluI | AGCT | 1 cut(s) | 144 |
| AlwI | GGATC | 2 cut(s) | 149, 218 |
| AspLEI | GCGC | 1 cut(s) | 185 |
| AspS9I | GGNCC | 1 cut(s) | 123 |
| AvaII | GGWCC | 1 cut(s) | 123 |
| BccI | CCATC | 1 cut(s) | 34 |
| BfaI | CTAG | 1 cut(s) | 138 |
| Bme18I | GGWCC | 1 cut(s) | 123 |
| BmgT120I | GGNCC | 1 cut(s) | 123 |
| BmiI | GGNNCC | 1 cut(s) | 124 |
| Bpu10I | CCTNAGC | 1 cut(s) | 145 |
| BsaJI | CCNNGG | 1 cut(s) | 126 |
| BseDI | CCNNGG | 1 cut(s) | 126 |
| BsiSI | CCGG | 2 cut(s) | 65, 94 |
| BslFI | GGGAC | 1 cut(s) | 136 |
| BsmFI | GGGAC | 1 cut(s) | 136 |
| BsmI | GAATGC | 1 cut(s) | 139 |
| Bsp143I | GATC | 2 cut(s) | 154, 210 |
| BspACI | CCGC | 1 cut(s) | 68 |
| BspLI | GGNNCC | 1 cut(s) | 124 |
| BspPI | GGATC | 2 cut(s) | 149, 218 |
| BssECI | CCNNGG | 1 cut(s) | 126 |
| BssMI | GATC | 2 cut(s) | 154, 210 |
| BstDEI | CTNAG | 1 cut(s) | 145 |
| BstHHI | GCGC | 1 cut(s) | 185 |
| BstKTI | GATC | 2 cut(s) | 157, 213 |
| BstMBI | GATC | 2 cut(s) | 154, 210 |
| BtsIMutI | CAGTG | 1 cut(s) | 220 |
| CfoI | GCGC | 1 cut(s) | 185 |
| Cfr13I | GGNCC | 1 cut(s) | 123 |
| CviJI | RGCY | 4 cut(s) | 52, 97, 144, 150 |
| CviKI_1 | RGCY | 4 cut(s) | 52, 97, 144, 150 |
| DdeI | CTNAG | 1 cut(s) | 145 |
| DpnI | GATC | 2 cut(s) | 156, 212 |
| DpnII | GATC | 2 cut(s) | 154, 210 |
| Eco47I | GGWCC | 1 cut(s) | 123 |
| EcoO109I | RGGNCCY | 1 cut(s) | 123 |
| FaiI | YATR | 2 cut(s) | 153, 201 |
| FaqI | GGGAC | 1 cut(s) | 136 |
| FspBI | CTAG | 1 cut(s) | 138 |
| GlaI | GCGC | 1 cut(s) | 184 |
| HapII | CCGG | 2 cut(s) | 65, 94 |
| HhaI | GCGC | 1 cut(s) | 185 |
| Hin6I | GCGC | 1 cut(s) | 183 |
| HinP1I | GCGC | 1 cut(s) | 183 |
| HindIII | AAGCTT | 1 cut(s) | 142 |
| HinfI | GANTC | 1 cut(s) | 90 |
| HpaII | CCGG | 2 cut(s) | 65, 94 |
| Hpy188I | TCNGA | 3 cut(s) | 86, 111, 130 |
| Hpy99I | CGWCG | 1 cut(s) | 90 |
| HpyCH4V | TGCA | 1 cut(s) | 34 |
| HpyF3I | CTNAG | 1 cut(s) | 145 |
| HspAI | GCGC | 1 cut(s) | 183 |
| Kzo9I | GATC | 2 cut(s) | 154, 210 |
| LpnPI | CCDG | 4 cut(s) | 78, 107, 165, 171 |
| MaeI | CTAG | 1 cut(s) | 138 |
| MalI | GATC | 2 cut(s) | 156, 212 |
| MboI | GATC | 2 cut(s) | 154, 210 |
| MmeI | TCCRAC | 1 cut(s) | 109 |
| MnlI | CCTC | 3 cut(s) | 34, 117, 136 |
| MspI | CCGG | 2 cut(s) | 65, 94 |
| Mva1269I | GAATGC | 1 cut(s) | 139 |
| NdeII | GATC | 2 cut(s) | 154, 210 |
| NlaIV | GGNNCC | 1 cut(s) | 124 |
| PctI | GAATGC | 1 cut(s) | 139 |
| PfeI | GAWTC | 1 cut(s) | 90 |
| PpuMI | RGGWCCY | 1 cut(s) | 123 |
| Psp5II | RGGWCCY | 1 cut(s) | 123 |
| PspN4I | GGNNCC | 1 cut(s) | 124 |
| PspPI | GGNCC | 1 cut(s) | 123 |
| PspPPI | RGGWCCY | 1 cut(s) | 123 |
| Sau3AI | GATC | 2 cut(s) | 154, 210 |
| Sau96I | GGNCC | 1 cut(s) | 123 |
| SetI | ASST | 3 cut(s) | 45, 128, 146 |
| SgeI | CNNG | 9 cut(s) | 52, 67, 77, 106, 123, 139, 150, 170, 192 |
| SinI | GGWCC | 1 cut(s) | 123 |
| SsiI | CCGC | 1 cut(s) | 68 |
| SspMI | CTAG | 1 cut(s) | 138 |
| TaqI | TCGA | 1 cut(s) | 39 |
| TfiI | GAWTC | 1 cut(s) | 90 |
| TscAI | CASTG | 1 cut(s) | 220 |
| TspRI | CASTG | 1 cut(s) | 220 |
| VpaK11BI | GGWCC | 1 cut(s) | 123 |
| XspI | CTAG | 1 cut(s) | 138 |