Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr5

Orthogroup ID

OG0028842

Physical Location & Seq

Genomic Coordinates Reverse (-)

18617008 .. 18617343

Gene Structure 336 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 336 bp

ATGTATCTATTCTTGCCAATGATATATATCAACTATTCTTTACTATACTTTGGAAAAATTGTATTTTTAGATAAAATCCCAGTCAGTGTAGGTGAACTTCTTAACCAAACTGGTGGCTTGAATCTGGGGAAGACTGTCCAGGCGATGATAAAAAATGTAATGGAAGGAAAAAATGAAAGTGCTGACCACTCTAGCAGTGATGACGAAGATGCCACTCAACTGAGGGCAGCCATAGTTTATTTGCTCGAGTCTTTTCCCCTTCCTCGTTGCACAGAAATGGCTATAACAGAGTTTCTGTTATTTGTATTGCATCATCGTTTCCAAGAAAGTGTATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006355 GO:0006996 GO:0008150 GO:0009295 GO:0009507 GO:0009532 GO:0009536 GO:0009570 GO:0009657 GO:0009658 GO:0009889 GO:0009987 GO:0010468 GO:0010556 GO:0016043 GO:0019219 GO:0019222 GO:0031323 GO:0031326 GO:0042644 GO:0042646 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0060255 GO:0065007 GO:0071840 GO:0080090 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

112

Amino Acids

12.59

Weight (kDa)

5.0

Isoelectric Point (pI)

27.98

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0028842)

Species	Orthologous Gene IDs
malus_domestica	MD05G1159100.v1.1
pyrus_communis	pycom05g15100

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AgsI	TTSAA	1 cut(s)	121
AjnI	CCWGG	1 cut(s)	138
Ama87I	CYCGRG	1 cut(s)	245
ApeKI	GCWGC	1 cut(s)	227
AsuHPI	GGTGA	1 cut(s)	104
AvaI	CYCGRG	1 cut(s)	245
BarI	GAAGNNNNNNTAC	2 cut(s)	81, 113
BbsI	GAAGAC	1 cut(s)	137
BbvI	GCAGC	1 cut(s)	239
BciT130I	CCWGG	1 cut(s)	140
BfaI	CTAG	1 cut(s)	192
BisI	GCNGC	1 cut(s)	228
BlsI	GCNGC	1 cut(s)	229
Bme1390I	CCNGG	1 cut(s)	140
BmeT110I	CYCGRG	1 cut(s)	245
BmrFI	CCNGG	1 cut(s)	140
BmrI	ACTGGG	1 cut(s)	74
BmsI	GCATC	2 cut(s)	199, 319
BmuI	ACTGGG	1 cut(s)	74
BpiI	GAAGAC	1 cut(s)	137
BsaBI	GATNNNNATC	1 cut(s)	26
Bse1I	ACTGG	2 cut(s)	80, 115
Bse8I	GATNNNNATC	1 cut(s)	26
BseBI	CCWGG	1 cut(s)	140
BseJI	GATNNNNATC	1 cut(s)	26
BseMII	CTCAG	1 cut(s)	212
BseNI	ACTGG	2 cut(s)	80, 115
BseXI	GCAGC	1 cut(s)	239
BsiHKCI	CYCGRG	1 cut(s)	245
BsoBI	CYCGRG	1 cut(s)	245
BspCNI	CTCAG	1 cut(s)	213
BsrI	ACTGG	2 cut(s)	80, 115
Bst2UI	CCWGG	1 cut(s)	140
Bst4CI	ACNGT	1 cut(s)	136
BstDEI	CTNAG	1 cut(s)	221
BstNI	CCWGG	1 cut(s)	140
BstSCI	CCNGG	1 cut(s)	138
BstV1I	GCAGC	1 cut(s)	239
BstV2I	GAAGAC	1 cut(s)	137
BstXI	CCANNNNNNTGG	1 cut(s)	113
BtgZI	GCGATG	1 cut(s)	158
BtsI	GCAGTG	1 cut(s)	202
BtsIMutI	CAGTG	2 cut(s)	91, 202
CviJI	RGCY	3 cut(s)	117, 230, 281
CviKI_1	RGCY	3 cut(s)	117, 230, 281
DdeI	CTNAG	1 cut(s)	221
Eco88I	CYCGRG	1 cut(s)	245
EcoRII	CCWGG	1 cut(s)	138
FaiI	YATR	6 cut(s)	25, 27, 46, 233, 284, 334
Fnu4HI	GCNGC	1 cut(s)	228
Fsp4HI	GCNGC	1 cut(s)	228
FspBI	CTAG	1 cut(s)	192
GluI	GCNGC	1 cut(s)	228
HinfI	GANTC	2 cut(s)	121, 248
HphI	GGTGA	1 cut(s)	104
Hpy166II	GTNNAC	1 cut(s)	95
Hpy8I	GTNNAC	1 cut(s)	95
HpyAV	CCTTC	2 cut(s)	158, 269
HpyCH4III	ACNGT	1 cut(s)	136
HpyCH4V	TGCA	2 cut(s)	270, 310
HpyF3I	CTNAG	1 cut(s)	221
LpnPI	CCDG	5 cut(s)	93, 96, 110, 125, 152
Lsp1109I	GCAGC	1 cut(s)	239
LweI	GCATC	2 cut(s)	199, 319
MaeI	CTAG	1 cut(s)	192
MboII	GAAGA	2 cut(s)	142, 218
MluCI	AATT	1 cut(s)	57
MlyI	GAGTC	1 cut(s)	257
MnlI	CCTC	2 cut(s)	216, 273
MseI	TTAA	1 cut(s)	102
MslI	CAYNNNNRTG	1 cut(s)	275
MspR9I	CCNGG	1 cut(s)	140
MvaI	CCWGG	1 cut(s)	140
PaeR7I	CTCGAG	1 cut(s)	245
PfeI	GAWTC	1 cut(s)	121
PkrI	GCNGC	1 cut(s)	229
PleI	GAGTC	1 cut(s)	256
PpsI	GAGTC	1 cut(s)	256
Psp6I	CCWGG	1 cut(s)	138
PspGI	CCWGG	1 cut(s)	138
PspXI	VCTCGAGB	1 cut(s)	245
RseI	CAYNNNNRTG	1 cut(s)	275
SaqAI	TTAA	1 cut(s)	102
SatI	GCNGC	1 cut(s)	228
SchI	GAGTC	1 cut(s)	257
ScrFI	CCNGG	1 cut(s)	140
SetI	ASST	1 cut(s)	94
SfaNI	GCATC	2 cut(s)	199, 319
Sfr274I	CTCGAG	1 cut(s)	245
SlaI	CTCGAG	1 cut(s)	245
SmiMI	CAYNNNNRTG	1 cut(s)	275
SmlI	CTYRAG	1 cut(s)	245
SmoI	CTYRAG	1 cut(s)	245
Sse9I	AATT	1 cut(s)	57
SspMI	CTAG	1 cut(s)	192
StyD4I	CCNGG	1 cut(s)	138
TaaI	ACNGT	1 cut(s)	136
TaqI	TCGA	1 cut(s)	246
TasI	AATT	1 cut(s)	57
TfiI	GAWTC	1 cut(s)	121
Tru1I	TTAA	1 cut(s)	102
Tru9I	TTAA	1 cut(s)	102
TscAI	CASTG	2 cut(s)	91, 202
TseI	GCWGC	1 cut(s)	227
TspDTI	ATGAA	1 cut(s)	189
TspRI	CASTG	2 cut(s)	91, 202
XhoI	CTCGAG	1 cut(s)	245
XspI	CTAG	1 cut(s)	192

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.