Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr5

Orthogroup ID

OG0029276

Physical Location & Seq

Genomic Coordinates Forward (+)

20451549 .. 20452277

Gene Structure 729 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 729 bp

ATGGGTCCCACTATCCTCCTCCATGGAGGCATCCCTTCGTCTTCTCCAGCAGCTCAGCAATCCTCAATTACCCTTTTGACAGCTCTGCAGGGTTTGCCTGTTTTGGAGCTCGCTTCAATTCTCATCAATTTGGTACTCTTTGTTGGGTTCCTCTGCATCCTCTTAGCTCGCCGAGTGTTTAGTTGTCTGAGTCGGATTAGAATCCTCAAGGATGATTCGGATTCGAATTCGAGCTCAATTCAGCGTAATAGTGCTGTGGATGGAGGAACTCATGAGGTTAGAGTTGGCAGAGACTTTAAATTTTCGGTCTTTTGTTGCTTCTATGTGTTGTTTGTGCAAGTTTTGGTGTTGGGTTTTGATGGGGTTGGTCTGATAAGGGAGAGAAGTAATGGAAATGTTGTGGATTGGTCTGTGATGGTCTTGCCTGCTGCACAAGCTTTGGCTTGGTTCGTGCTGAGCTTTTCGGCTCTGCATTGTAAGTTCAAGAAATGTGAGAAATTCCCACTGCTTTTGAGGGTCTGGTGGTCTGTGTCATTTCTGATTTGCTTGTGCACTTTATATGTTGATGGGAGAGCTTTTGCAATCGAAGGATCGAAACACATGAGTTCTCATGTTGTGGCAAATCTCGCTGTGACACCGGCCCTAGCGTTTCTTTGTTTCGTTGCATGTAGGGGTGTTACTGGTATTCAAGTTTCTGGACAATCTGATCGTTCAAGAGCCATTGCTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000325 GO:0001101 GO:0003674 GO:0003824 GO:0004888 GO:0005215 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0005774 GO:0006810 GO:0006873 GO:0006875 GO:0006950 GO:0006970 GO:0007154 GO:0007165 GO:0008150 GO:0008281 GO:0009628 GO:0009651 GO:0009719 GO:0009725 GO:0009737 GO:0009738 GO:0009755 GO:0009987 GO:0010033 GO:0010118 GO:0015399 GO:0015405 GO:0016020 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0016887 GO:0017111 GO:0019725 GO:0022804 GO:0022857 GO:0023052 GO:0030003 GO:0030004 GO:0030007 GO:0031090 GO:0032870 GO:0033993 GO:0038023 GO:0042221 GO:0042592 GO:0042623 GO:0042626 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043492 GO:0044422 GO:0044424 GO:0044437 GO:0044444 GO:0044446 GO:0044464 GO:0048878 GO:0050789 GO:0050794 GO:0050801 GO:0050896 GO:0051179 GO:0051234 GO:0051716 GO:0055065 GO:0055067 GO:0055075 GO:0055080 GO:0055082 GO:0055085 GO:0060089 GO:0065007 GO:0065008 GO:0070887 GO:0071215 GO:0071229 GO:0071310 GO:0071396 GO:0071495 GO:0097305 GO:0097306 GO:0098588 GO:0098771 GO:0098805 GO:1901527 GO:1901700 GO:1901701

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

ABC_membrane ABC_tran

Protein Analysis

243

Amino Acids

26.3

Weight (kDa)

9.02

Isoelectric Point (pI)

45.24

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0029276)

Species	Orthologous Gene IDs
pyrus_communis	pycom05g17230
rosa_multiflora	Rmu_ssc0000268.1_g000002

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AclWI	GGATC	1 cut(s)	598
AcsI	RAATTY	3 cut(s)	226, 299, 497
AfaI	GTAC	1 cut(s)	135
AgsI	TTSAA	4 cut(s)	117, 484, 689, 714
AluBI	AGCT	8 cut(s)	53, 83, 109, 167, 234, 437, 459, 575
AluI	AGCT	8 cut(s)	53, 83, 109, 167, 234, 437, 459, 575
Alw21I	GWGCWC	3 cut(s)	111, 236, 554
Alw26I	GTCTC	1 cut(s)	285
Alw44I	GTGCAC	1 cut(s)	550
AlwI	GGATC	1 cut(s)	598
AoxI	GGCC	1 cut(s)	639
ApaLI	GTGCAC	1 cut(s)	550
ApeKI	GCWGC	2 cut(s)	50, 428
ApoI	RAATTY	3 cut(s)	226, 299, 497
AspS9I	GGNCC	2 cut(s)	5, 640
AsuII	TTCGAA	1 cut(s)	224
AvaII	GGWCC	1 cut(s)	5
BaeGI	GKGCMC	1 cut(s)	554
BanII	GRGCYC	2 cut(s)	111, 236
BbsI	GAAGAC	1 cut(s)	33
Bbv12I	GWGCWC	3 cut(s)	111, 236, 554
BbvI	GCAGC	2 cut(s)	62, 415
BccI	CCATC	4 cut(s)	254, 353, 409, 560
BcoDI	GTCTC	1 cut(s)	285
BfaI	CTAG	1 cut(s)	644
BfmI	CTRYAG	1 cut(s)	86
BisI	GCNGC	2 cut(s)	51, 429
BlpI	GCTNAGC	2 cut(s)	54, 455
BlsI	GCNGC	2 cut(s)	52, 430
Bme18I	GGWCC	1 cut(s)	5
BmgT120I	GGNCC	2 cut(s)	5, 640
BmiI	GGNNCC	3 cut(s)	6, 7, 149
BmsI	GCATC	2 cut(s)	39, 165
BpiI	GAAGAC	1 cut(s)	33
BpmI	CTGGAG	1 cut(s)	30
Bpu1102I	GCTNAGC	2 cut(s)	54, 455
Bpu14I	TTCGAA	1 cut(s)	224
BpuEI	CTTGAG	1 cut(s)	191
BsaBI	GATNNNNATC	1 cut(s)	200
BsaJI	CCNNGG	1 cut(s)	22
Bse118I	RCCGGY	1 cut(s)	637
Bse1I	ACTGG	1 cut(s)	685
Bse3DI	GCAATG	1 cut(s)	720
Bse8I	GATNNNNATC	1 cut(s)	200
BseDI	CCNNGG	1 cut(s)	22
BseGI	GGATG	4 cut(s)	30, 156, 217, 265
BseJI	GATNNNNATC	1 cut(s)	200
BseMI	GCAATG	1 cut(s)	720
BseMII	CTCAG	3 cut(s)	68, 179, 446
BseNI	ACTGG	1 cut(s)	685
BseRI	GAGGAG	1 cut(s)	8
BseSI	GKGCMC	1 cut(s)	554
BseXI	GCAGC	2 cut(s)	62, 415
BsgI	GTGCAG	1 cut(s)	414
BshFI	GGCC	1 cut(s)	641
BsiHKAI	GWGCWC	3 cut(s)	111, 236, 554
BsiSI	CCGG	1 cut(s)	638
BsmAI	GTCTC	1 cut(s)	285
BsnI	GGCC	1 cut(s)	641
Bsp119I	TTCGAA	1 cut(s)	224
Bsp1286I	GDGCHC	3 cut(s)	111, 236, 554
Bsp143I	GATC	2 cut(s)	590, 706
Bsp1720I	GCTNAGC	2 cut(s)	54, 455
Bsp19I	CCATGG	1 cut(s)	22
BspANI	GGCC	1 cut(s)	641
BspCNI	CTCAG	3 cut(s)	67, 180, 447
BspHI	TCATGA	1 cut(s)	271
BspLI	GGNNCC	3 cut(s)	6, 7, 149
BspMAI	CTGCAG	1 cut(s)	90
BspPI	GGATC	1 cut(s)	598
BspT104I	TTCGAA	1 cut(s)	224
BsrDI	GCAATG	1 cut(s)	720
BsrFI	RCCGGY	1 cut(s)	637
BsrI	ACTGG	1 cut(s)	685
BssAI	RCCGGY	1 cut(s)	637
BssECI	CCNNGG	1 cut(s)	22
BssMI	GATC	2 cut(s)	590, 706
BssT1I	CCWWGG	1 cut(s)	22
BstAPI	GCANNNNNTGC	1 cut(s)	94
BstBI	TTCGAA	1 cut(s)	224
BstC8I	GCNNGC	3 cut(s)	111, 169, 426
BstDEI	CTNAG	4 cut(s)	54, 163, 188, 455
BstDSI	CCRYGG	1 cut(s)	22
BstF5I	GGATG	4 cut(s)	30, 156, 217, 265
BstKTI	GATC	2 cut(s)	593, 709
BstMAI	GTCTC	1 cut(s)	285
BstMBI	GATC	2 cut(s)	590, 706
BstMWI	GCNNNNNNNGC	3 cut(s)	94, 434, 626
BstNSI	RCATGY	1 cut(s)	669
BstSFI	CTRYAG	1 cut(s)	86
BstSLI	GKGCMC	1 cut(s)	554
BstV1I	GCAGC	2 cut(s)	62, 415
BstV2I	GAAGAC	1 cut(s)	33
BsuRI	GGCC	1 cut(s)	641
BtgI	CCRYGG	1 cut(s)	22
BtsCI	GGATG	4 cut(s)	30, 156, 217, 265
BtsI	GCAGTG	1 cut(s)	503
BtsIMutI	CAGTG	1 cut(s)	503
Cac8I	GCNNGC	3 cut(s)	111, 169, 426
CciI	TCATGA	1 cut(s)	271
Cfr10I	RCCGGY	1 cut(s)	637
Cfr13I	GGNCC	2 cut(s)	5, 640
Csp6I	GTAC	1 cut(s)	134
CspCI	CAANNNNNGTGG	2 cut(s)	492, 527
CviAII	CATG	5 cut(s)	23, 272, 601, 611, 666
CviQI	GTAC	1 cut(s)	134
DdeI	CTNAG	4 cut(s)	54, 163, 188, 455
DpnI	GATC	2 cut(s)	592, 708
DpnII	GATC	2 cut(s)	590, 706
DraI	TTTAAA	1 cut(s)	298
Ecl136II	GAGCTC	2 cut(s)	109, 234
Eco130I	CCWWGG	1 cut(s)	22
Eco24I	GRGCYC	2 cut(s)	111, 236
Eco47I	GGWCC	1 cut(s)	5
Eco53kI	GAGCTC	2 cut(s)	109, 234
EcoICRI	GAGCTC	2 cut(s)	109, 234
EcoO109I	RGGNCCY	1 cut(s)	5
EcoRI	GAATTC	1 cut(s)	226
EcoT14I	CCWWGG	1 cut(s)	22
EcoT38I	GRGCYC	2 cut(s)	111, 236
ErhI	CCWWGG	1 cut(s)	22
FaeI	CATG	5 cut(s)	26, 275, 604, 614, 669
FaiI	YATR	8 cut(s)	24, 273, 324, 559, 561, 602, 612, 667
FatI	CATG	5 cut(s)	22, 271, 600, 610, 665
Fnu4HI	GCNGC	2 cut(s)	51, 429
FokI	GGATG	4 cut(s)	17, 143, 224, 272
FriOI	GRGCYC	2 cut(s)	111, 236
Fsp4HI	GCNGC	2 cut(s)	51, 429
FspBI	CTAG	1 cut(s)	644
GluI	GCNGC	2 cut(s)	51, 429
GsuI	CTGGAG	1 cut(s)	30
HaeIII	GGCC	1 cut(s)	641
HapII	CCGG	1 cut(s)	638
Hin1II	CATG	5 cut(s)	26, 275, 604, 614, 669
HindIII	AAGCTT	1 cut(s)	435
HinfI	GANTC	4 cut(s)	190, 201, 215, 221
HpaII	CCGG	1 cut(s)	638
Hpy166II	GTNNAC	1 cut(s)	552
Hpy188I	TCNGA	6 cut(s)	189, 195, 220, 372, 540, 706
Hpy188III	TCNNGA	4 cut(s)	272, 484, 696, 714
Hpy8I	GTNNAC	1 cut(s)	552
HpyAV	CCTTC	2 cut(s)	45, 581
HpyCH4V	TGCA	8 cut(s)	88, 156, 337, 431, 472, 552, 581, 665
HpyF10VI	GCNNNNNNNGC	3 cut(s)	94, 434, 626
HpyF3I	CTNAG	4 cut(s)	54, 163, 188, 455
Hsp92II	CATG	5 cut(s)	26, 275, 604, 614, 669
KflI	GGGWCCC	1 cut(s)	5
Kzo9I	GATC	2 cut(s)	590, 706
LmnI	GCTCC	1 cut(s)	106
LpnPI	CCDG	8 cut(s)	60, 74, 111, 438, 505, 651, 666, 681
Lsp1109I	GCAGC	2 cut(s)	62, 415
LweI	GCATC	2 cut(s)	39, 165
MaeI	CTAG	1 cut(s)	644
MaeIII	GTNAC	2 cut(s)	631, 676
MalI	GATC	2 cut(s)	592, 708
MboI	GATC	2 cut(s)	590, 706
MboII	GAAGA	1 cut(s)	33
MhlI	GDGCHC	3 cut(s)	111, 236, 554
MluCI	AATT	7 cut(s)	66, 117, 127, 226, 237, 299, 497
MlyI	GAGTC	1 cut(s)	199
MmeI	TCCRAC	1 cut(s)	173
MseI	TTAA	1 cut(s)	297
MspI	CCGG	1 cut(s)	638
MwoI	GCNNNNNNNGC	3 cut(s)	94, 434, 626
NcoI	CCATGG	1 cut(s)	22
NdeII	GATC	2 cut(s)	590, 706
NlaIII	CATG	5 cut(s)	26, 275, 604, 614, 669
NlaIV	GGNNCC	3 cut(s)	6, 7, 149
NmeAIII	GCCGAG	1 cut(s)	197
NmuCI	GTSAC	1 cut(s)	631
NspI	RCATGY	1 cut(s)	669
NspV	TTCGAA	1 cut(s)	224
PagI	TCATGA	1 cut(s)	271
PfeI	GAWTC	3 cut(s)	201, 215, 221
PkrI	GCNGC	2 cut(s)	52, 430
PleI	GAGTC	1 cut(s)	198
PpsI	GAGTC	1 cut(s)	198
PpuMI	RGGWCCY	1 cut(s)	5
Psp124BI	GAGCTC	2 cut(s)	111, 236
Psp5II	RGGWCCY	1 cut(s)	5
PspN4I	GGNNCC	3 cut(s)	6, 7, 149
PspPI	GGNCC	2 cut(s)	5, 640
PspPPI	RGGWCCY	1 cut(s)	5
PstI	CTGCAG	1 cut(s)	90
RsaI	GTAC	1 cut(s)	135
RsaNI	GTAC	1 cut(s)	134
SacI	GAGCTC	2 cut(s)	111, 236
SaqAI	TTAA	1 cut(s)	297
SatI	GCNGC	2 cut(s)	51, 429
Sau3AI	GATC	2 cut(s)	590, 706
Sau96I	GGNCC	2 cut(s)	5, 640
SchI	GAGTC	1 cut(s)	199
SduI	GDGCHC	3 cut(s)	111, 236, 554
SetI	ASST	9 cut(s)	55, 85, 111, 169, 236, 279, 439, 461, 577
SfaNI	GCATC	2 cut(s)	39, 165
SfcI	CTRYAG	1 cut(s)	86
SfuI	TTCGAA	1 cut(s)	224
SinI	GGWCC	1 cut(s)	5
SmlI	CTYRAG	1 cut(s)	206
SmoI	CTYRAG	1 cut(s)	206
Sse9I	AATT	7 cut(s)	66, 117, 127, 226, 237, 299, 497
SspMI	CTAG	1 cut(s)	644
SstI	GAGCTC	2 cut(s)	111, 236
StyI	CCWWGG	1 cut(s)	22
TaqI	TCGA	4 cut(s)	224, 230, 585, 593
TaqII	GACCGA	1 cut(s)	295
TasI	AATT	7 cut(s)	66, 117, 127, 226, 237, 299, 497
TfiI	GAWTC	3 cut(s)	201, 215, 221
Tru1I	TTAA	1 cut(s)	297
Tru9I	TTAA	1 cut(s)	297
TscAI	CASTG	1 cut(s)	510
TseFI	GTSAC	1 cut(s)	631
TseI	GCWGC	2 cut(s)	50, 428
Tsp45I	GTSAC	1 cut(s)	631
TspRI	CASTG	1 cut(s)	510
VneI	GTGCAC	1 cut(s)	550
VpaK11BI	GGWCC	1 cut(s)	5
XapI	RAATTY	3 cut(s)	226, 299, 497
XceI	RCATGY	1 cut(s)	669
XspI	CTAG	1 cut(s)	644

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.