Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_ssc0000268.1

Orthogroup ID

OG0029276

Physical Location & Seq

Genomic Coordinates Forward (+)

19902 .. 20633

Gene Structure 732 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_ssc0000268.1_g000002.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 732 bp

atgggtctcactctcttgcttcacaaaatctcagcttcttcttcatcttcaaacccagctcagctatcccagacgacccctttgggagctgtgcaaggtctgcccttcctggagctgtcttctattgtcatcaatttggcgctagttcttgcgtttctcttcatcgtttcggcccggcggatggttgtctgtctgggccggattagggtgctgaaagacgatttgggttcgaatgggaacccaattcagcatgatagtgctgttgataggggaatccgggaggttagagtgggcacagactttaaattttcagtgttttgctgcttctatgtgttgtttgtgcaagttgtggtgttgggttttgatggggttggtttggttagaggaggaggggttggtagtgggagggtggtggtttggtctgtgctttgcttaccagctgcacagggcttagcttggtttgtgatgagcttctccgctttgcattgtaagttcaaggcggccgagaagttcccattgctgttgaggggttggtgggctgtctcctttgtgctttgcttgtgcactttgtatgttgatgggagaggttttgtacaagaaggctcgatacaccttcattctcatgttgtggctaatttcgcagtcacaccggccctagcgtttctctgtttcgttggagttaggggtgtgactggtgtgattgtttgtagaaactctgagcttcaagagcca

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000325 GO:0001101 GO:0003674 GO:0003824 GO:0004888 GO:0005215 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0005774 GO:0006810 GO:0006873 GO:0006875 GO:0006950 GO:0006970 GO:0007154 GO:0007165 GO:0008150 GO:0008281 GO:0009628 GO:0009651 GO:0009719 GO:0009725 GO:0009737 GO:0009738 GO:0009755 GO:0009987 GO:0010033 GO:0010118 GO:0015399 GO:0015405 GO:0016020 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0016887 GO:0017111 GO:0019725 GO:0022804 GO:0022857 GO:0023052 GO:0030003 GO:0030004 GO:0030007 GO:0031090 GO:0032870 GO:0033993 GO:0038023 GO:0042221 GO:0042592 GO:0042623 GO:0042626 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043492 GO:0044422 GO:0044424 GO:0044437 GO:0044444 GO:0044446 GO:0044464 GO:0048878 GO:0050789 GO:0050794 GO:0050801 GO:0050896 GO:0051179 GO:0051234 GO:0051716 GO:0055065 GO:0055067 GO:0055075 GO:0055080 GO:0055082 GO:0055085 GO:0060089 GO:0065007 GO:0065008 GO:0070887 GO:0071215 GO:0071229 GO:0071310 GO:0071396 GO:0071495 GO:0097305 GO:0097306 GO:0098588 GO:0098771 GO:0098805 GO:1901527 GO:1901700 GO:1901701

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

ABC_membrane ABC_tran

Protein Analysis

244

Amino Acids

26.26

Weight (kDa)

8.97

Isoelectric Point (pI)

26.7

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0029276)

Species	Orthologous Gene IDs
pyrus_communis	pycom05g17230
rosa_multiflora	Rmu_ssc0000268.1_g000002

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	3 cut(s)	178, 477, 500
AcoI	YGGCCR	1 cut(s)	501
AcsI	RAATTY	1 cut(s)	305
AfaI	GTAC	1 cut(s)	594
AfiI	CCNNNNNNNGG	2 cut(s)	181, 205
AgsI	TTSAA	3 cut(s)	51, 496, 725
AjnI	CCWGG	1 cut(s)	108
AjuI	GAANNNNNNNTTGG	2 cut(s)	206, 238
AluBI	AGCT	9 cut(s)	35, 59, 64, 89, 115, 440, 455, 471, 721
AluI	AGCT	9 cut(s)	35, 59, 64, 89, 115, 440, 455, 471, 721
Alw21I	GWGCWC	1 cut(s)	566
Alw26I	GTCTC	2 cut(s)	11, 547
Alw44I	GTGCAC	1 cut(s)	562
AoxI	GGCC	4 cut(s)	171, 196, 501, 651
ApaLI	GTGCAC	1 cut(s)	562
ApeKI	GCWGC	2 cut(s)	321, 440
ApoI	RAATTY	1 cut(s)	305
ArsI	GACNNNNNNTTYG	2 cut(s)	64, 96
AspLEI	GCGC	1 cut(s)	142
AspS9I	GGNCC	3 cut(s)	172, 196, 652
AsuC2I	CCSGG	2 cut(s)	175, 278
AsuII	TTCGAA	1 cut(s)	230
BaeGI	GKGCMC	2 cut(s)	296, 566
BarI	GAAGNNNNNNTAC	2 cut(s)	591, 623
BbsI	GAAGAC	1 cut(s)	111
Bbv12I	GWGCWC	1 cut(s)	566
BbvI	GCAGC	2 cut(s)	308, 427
BccI	CCATC	3 cut(s)	175, 359, 572
BciT130I	CCWGG	1 cut(s)	110
BcnI	CCSGG	2 cut(s)	175, 278
BcoDI	GTCTC	2 cut(s)	11, 547
BfaI	CTAG	2 cut(s)	143, 656
BfoI	RGCGCY	1 cut(s)	143
BisI	GCNGC	3 cut(s)	322, 441, 501
BlpI	GCTNAGC	2 cut(s)	60, 451
BlsI	GCNGC	3 cut(s)	323, 442, 502
Bme1390I	CCNGG	3 cut(s)	110, 175, 278
BmgT120I	GGNCC	3 cut(s)	172, 196, 652
BmiI	GGNNCC	1 cut(s)	239
BmrFI	CCNGG	3 cut(s)	110, 175, 278
BpiI	GAAGAC	1 cut(s)	111
BpmI	CTGGAG	1 cut(s)	131
Bpu1102I	GCTNAGC	2 cut(s)	60, 451
Bpu14I	TTCGAA	1 cut(s)	230
BpuMI	CCSGG	2 cut(s)	175, 278
BsaI	GGTCTC	1 cut(s)	11
BsaXI	ACNNNNNCTCC	2 cut(s)	378, 408
Bsc4I	CCNNNNNNNGG	2 cut(s)	181, 205
Bse118I	RCCGGY	1 cut(s)	649
Bse1I	ACTGG	1 cut(s)	697
Bse3DI	GCAATG	1 cut(s)	515
BseBI	CCWGG	1 cut(s)	110
BseGI	GGATG	1 cut(s)	186
BseLI	CCNNNNNNNGG	2 cut(s)	181, 205
BseMI	GCAATG	1 cut(s)	515
BseMII	CTCAG	3 cut(s)	45, 74, 708
BseNI	ACTGG	1 cut(s)	697
BseRI	GAGGAG	2 cut(s)	399, 402
BseSI	GKGCMC	2 cut(s)	296, 566
BseX3I	CGGCCG	1 cut(s)	501
BseXI	GCAGC	2 cut(s)	308, 427
BseYI	CCCAGC	1 cut(s)	55
BsgI	GTGCAG	1 cut(s)	426
Bsh1285I	CGRYCG	1 cut(s)	504
BshFI	GGCC	4 cut(s)	173, 198, 503, 653
BsiEI	CGRYCG	1 cut(s)	504
BsiHKAI	GWGCWC	1 cut(s)	566
BsiSI	CCGG	4 cut(s)	175, 199, 277, 650
BslI	CCNNNNNNNGG	2 cut(s)	181, 205
BsmAI	GTCTC	2 cut(s)	11, 547
BsnI	GGCC	4 cut(s)	173, 198, 503, 653
Bso31I	GGTCTC	1 cut(s)	11
Bsp119I	TTCGAA	1 cut(s)	230
Bsp1286I	GDGCHC	2 cut(s)	296, 566
Bsp1407I	TGTACA	1 cut(s)	592
Bsp1720I	GCTNAGC	2 cut(s)	60, 451
BspACI	CCGC	3 cut(s)	178, 477, 500
BspANI	GGCC	4 cut(s)	173, 198, 503, 653
BspCNI	CTCAG	3 cut(s)	44, 73, 709
BspLI	GGNNCC	1 cut(s)	239
BspT104I	TTCGAA	1 cut(s)	230
BspTNI	GGTCTC	1 cut(s)	11
BsrDI	GCAATG	1 cut(s)	515
BsrFI	RCCGGY	1 cut(s)	649
BsrGI	TGTACA	1 cut(s)	592
BsrI	ACTGG	1 cut(s)	697
BssAI	RCCGGY	1 cut(s)	649
Bst2UI	CCWGG	1 cut(s)	110
Bst6I	CTCTTC	1 cut(s)	164
BstAPI	GCANNNNNTGC	1 cut(s)	100
BstAUI	TGTACA	1 cut(s)	592
BstBI	TTCGAA	1 cut(s)	230
BstDEI	CTNAG	4 cut(s)	31, 60, 451, 717
BstF5I	GGATG	1 cut(s)	186
BstH2I	RGCGCY	1 cut(s)	143
BstHHI	GCGC	1 cut(s)	142
BstMAI	GTCTC	2 cut(s)	11, 547
BstMCI	CGRYCG	1 cut(s)	504
BstMWI	GCNNNNNNNGC	3 cut(s)	100, 638, 727
BstNI	CCWGG	1 cut(s)	110
BstSCI	CCNGG	3 cut(s)	108, 173, 276
BstSLI	GKGCMC	2 cut(s)	296, 566
BstV1I	GCAGC	2 cut(s)	308, 427
BstV2I	GAAGAC	1 cut(s)	111
BstZI	CGGCCG	1 cut(s)	501
BsuRI	GGCC	4 cut(s)	173, 198, 503, 653
BtsCI	GGATG	1 cut(s)	186
BtsIMutI	CAGTG	1 cut(s)	318
CfoI	GCGC	1 cut(s)	142
Cfr10I	RCCGGY	1 cut(s)	649
Cfr13I	GGNCC	3 cut(s)	172, 196, 652
Csp6I	GTAC	1 cut(s)	593
CviAII	CATG	2 cut(s)	251, 623
CviQI	GTAC	1 cut(s)	593
DdeI	CTNAG	4 cut(s)	31, 60, 451, 717
DraI	TTTAAA	1 cut(s)	304
EaeI	YGGCCR	1 cut(s)	501
EagI	CGGCCG	1 cut(s)	501
Eam1104I	CTCTTC	1 cut(s)	164
EarI	CTCTTC	1 cut(s)	164
EciI	GGCGGA	1 cut(s)	193
EclXI	CGGCCG	1 cut(s)	501
Eco31I	GGTCTC	1 cut(s)	11
Eco52I	CGGCCG	1 cut(s)	501
EcoRII	CCWGG	1 cut(s)	108
FaeI	CATG	2 cut(s)	254, 626
FaiI	YATR	4 cut(s)	252, 330, 573, 624
FatI	CATG	2 cut(s)	250, 622
Fnu4HI	GCNGC	3 cut(s)	322, 441, 501
FokI	GGATG	1 cut(s)	193
Fsp4HI	GCNGC	3 cut(s)	322, 441, 501
FspBI	CTAG	2 cut(s)	143, 656
GlaI	GCGC	1 cut(s)	141
GluI	GCNGC	3 cut(s)	322, 441, 501
GsaI	CCCAGC	1 cut(s)	59
GsuI	CTGGAG	1 cut(s)	131
HaeII	RGCGCY	1 cut(s)	143
HaeIII	GGCC	4 cut(s)	173, 198, 503, 653
HapII	CCGG	4 cut(s)	175, 199, 277, 650
HhaI	GCGC	1 cut(s)	142
Hin1II	CATG	2 cut(s)	254, 626
Hin6I	GCGC	1 cut(s)	140
HinP1I	GCGC	1 cut(s)	140
HinfI	GANTC	1 cut(s)	273
HpaII	CCGG	4 cut(s)	175, 199, 277, 650
Hpy166II	GTNNAC	1 cut(s)	564
Hpy188I	TCNGA	1 cut(s)	718
Hpy188III	TCNNGA	1 cut(s)	725
Hpy8I	GTNNAC	1 cut(s)	564
HpyAV	CCTTC	3 cut(s)	115, 593, 623
HpyCH4V	TGCA	5 cut(s)	94, 343, 443, 484, 564
HpyF10VI	GCNNNNNNNGC	3 cut(s)	100, 638, 727
HpyF3I	CTNAG	4 cut(s)	31, 60, 451, 717
Hsp92II	CATG	2 cut(s)	254, 626
HspAI	GCGC	1 cut(s)	140
LmnI	GCTCC	2 cut(s)	86, 112
Lsp1109I	GCAGC	2 cut(s)	308, 427
MaeI	CTAG	2 cut(s)	143, 656
MaeIII	GTNAC	2 cut(s)	643, 688
MboII	GAAGA	5 cut(s)	30, 33, 39, 111, 151
MhlI	GDGCHC	2 cut(s)	296, 566
MluCI	AATT	4 cut(s)	133, 243, 305, 634
MmeI	TCCRAC	1 cut(s)	655
MnlI	CCTC	7 cut(s)	274, 377, 380, 383, 399, 519, 578
MseI	TTAA	1 cut(s)	303
MslI	CAYNNNNRTG	2 cut(s)	255, 621
MspA1I	CMGCKG	1 cut(s)	440
MspI	CCGG	4 cut(s)	175, 199, 277, 650
MspR9I	CCNGG	3 cut(s)	110, 175, 278
MvaI	CCWGG	1 cut(s)	110
MwoI	GCNNNNNNNGC	3 cut(s)	100, 638, 727
NciI	CCSGG	2 cut(s)	175, 278
NlaIII	CATG	2 cut(s)	254, 626
NlaIV	GGNNCC	1 cut(s)	239
NmeAIII	GCCGAG	1 cut(s)	529
NmuCI	GTSAC	2 cut(s)	643, 688
NspV	TTCGAA	1 cut(s)	230
PfeI	GAWTC	1 cut(s)	273
PfoI	TCCNGGA	2 cut(s)	108, 276
PkrI	GCNGC	3 cut(s)	323, 442, 502
Psp6I	CCWGG	1 cut(s)	108
PspFI	CCCAGC	1 cut(s)	55
PspGI	CCWGG	1 cut(s)	108
PspN4I	GGNNCC	1 cut(s)	239
PspPI	GGNCC	3 cut(s)	172, 196, 652
PvuII	CAGCTG	1 cut(s)	440
RsaI	GTAC	1 cut(s)	594
RsaNI	GTAC	1 cut(s)	593
RseI	CAYNNNNRTG	2 cut(s)	255, 621
SaqAI	TTAA	1 cut(s)	303
SatI	GCNGC	3 cut(s)	322, 441, 501
Sau96I	GGNCC	3 cut(s)	172, 196, 652
ScrFI	CCNGG	3 cut(s)	110, 175, 278
SduI	GDGCHC	2 cut(s)	296, 566
SfuI	TTCGAA	1 cut(s)	230
SmiMI	CAYNNNNRTG	2 cut(s)	255, 621
Sse9I	AATT	4 cut(s)	133, 243, 305, 634
SsiI	CCGC	3 cut(s)	178, 477, 500
SspMI	CTAG	2 cut(s)	143, 656
StyD4I	CCNGG	3 cut(s)	108, 173, 276
TaqI	TCGA	2 cut(s)	230, 605
TasI	AATT	4 cut(s)	133, 243, 305, 634
TatI	WGTACW	1 cut(s)	592
TauI	GCSGC	1 cut(s)	503
TfiI	GAWTC	1 cut(s)	273
Tru1I	TTAA	1 cut(s)	303
Tru9I	TTAA	1 cut(s)	303
TscAI	CASTG	1 cut(s)	318
TseFI	GTSAC	2 cut(s)	643, 688
TseI	GCWGC	2 cut(s)	321, 440
Tsp45I	GTSAC	2 cut(s)	643, 688
TspDTI	ATGAA	3 cut(s)	33, 151, 605
TspRI	CASTG	1 cut(s)	318
VneI	GTGCAC	1 cut(s)	562
XapI	RAATTY	1 cut(s)	305
XspI	CTAG	2 cut(s)	143, 656

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.