pycom05g18880

F-box kelch-repeat protein

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr5
Physical Location & Seq
Forward (+)
21735586 .. 21736249
664 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom05g18880.2

Sequence Viewer

Length: 324 bp
ATGCCACAGGTTCTAACCGGACATAACGCAGCATATGACATGGCTTCAAACCATTGGCGTAAGGAGTCACGTATAACAAGACAGGTCCCATGCGACTCACCATTTGGATTTGTTCTATTGAATGGAGAGTTGCATGTAATAACCCTTCTGAAGGCAGCTGAATCAGCAGAAATCCGCAGGTCGCAACTGCATAAGAGAGCAGGAACACTTTACATCCAAATCTACCATCCTAAGAAGAAGTCATGGAGATCGCTCATAACAAAGTCACCTTTCCATTACAGCTTGGATTTCAATACTGCAGTTATGAGCACCATTCGCTTGTGA
Functional Annotation
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

108

Amino Acids

12.32

Weight (kDa)

10.08

Isoelectric Point (pI)

68.96

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0024638)

Species Orthologous Gene IDs
pyrus_communis pycom05g18880 pycom11g21120
rosa_samantha Rh6CG324100

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 168
AciI CCGC 1 cut(s) 175
AcuI CTGAAG 1 cut(s) 170
AfiI CCNNNNNNNGG 1 cut(s) 151
AgsI TTSAA 3 cut(s) 48, 121, 292
AluBI AGCT 2 cut(s) 158, 282
AluI AGCT 2 cut(s) 158, 282
Alw21I GWGCWC 1 cut(s) 311
ApeKI GCWGC 2 cut(s) 29, 155
ArsI GACNNNNNNTTYG 2 cut(s) 86, 118
AspS9I GGNCC 1 cut(s) 85
AsuHPI GGTGA 2 cut(s) 90, 258
AvaII GGWCC 1 cut(s) 85
BarI GAAGNNNNNNTAC 2 cut(s) 129, 161
Bbv12I GWGCWC 1 cut(s) 311
BbvI GCAGC 2 cut(s) 41, 167
BccI CCATC 1 cut(s) 234
BfmI CTRYAG 1 cut(s) 297
BfuAI ACCTGC 1 cut(s) 168
BisI GCNGC 2 cut(s) 30, 156
BlsI GCNGC 2 cut(s) 31, 157
Bme18I GGWCC 1 cut(s) 85
BmgT120I GGNCC 1 cut(s) 85
BmiI GGNNCC 1 cut(s) 87
BsaAI YACGTR 1 cut(s) 71
BsaWI WCCGGW 1 cut(s) 17
Bsc4I CCNNNNNNNGG 1 cut(s) 151
BseGI GGATG 2 cut(s) 213, 226
BseLI CCNNNNNNNGG 1 cut(s) 151
BseXI GCAGC 2 cut(s) 41, 167
BsiHKAI GWGCWC 1 cut(s) 311
BsiSI CCGG 1 cut(s) 18
BslFI GGGAC 1 cut(s) 71
BslI CCNNNNNNNGG 1 cut(s) 151
BsmFI GGGAC 1 cut(s) 71
Bsp1286I GDGCHC 1 cut(s) 311
Bsp143I GATC 1 cut(s) 248
BspACI CCGC 1 cut(s) 175
BspLI GGNNCC 1 cut(s) 87
BspMAI CTGCAG 1 cut(s) 301
BspMI ACCTGC 1 cut(s) 168
BssMI GATC 1 cut(s) 248
BstBAI YACGTR 1 cut(s) 71
BstDEI CTNAG 1 cut(s) 231
BstENI CCTNNNNNAGG 1 cut(s) 149
BstF5I GGATG 2 cut(s) 213, 226
BstKTI GATC 1 cut(s) 251
BstMBI GATC 1 cut(s) 248
BstMWI GCNNNNNNNGC 2 cut(s) 164, 315
BstNSI RCATGY 1 cut(s) 137
BstSFI CTRYAG 1 cut(s) 297
BstV1I GCAGC 2 cut(s) 41, 167
BtsCI GGATG 2 cut(s) 213, 226
BveI ACCTGC 1 cut(s) 168
Cfr13I GGNCC 1 cut(s) 85
CviAII CATG 4 cut(s) 40, 90, 134, 243
CviJI RGCY 3 cut(s) 44, 158, 282
CviKI_1 RGCY 3 cut(s) 44, 158, 282
DdeI CTNAG 1 cut(s) 231
DpnI GATC 1 cut(s) 250
DpnII GATC 1 cut(s) 248
Eco47I GGWCC 1 cut(s) 85
Eco57I CTGAAG 1 cut(s) 170
EcoNI CCTNNNNNAGG 1 cut(s) 149
EcoO109I RGGNCCY 1 cut(s) 85
FaeI CATG 4 cut(s) 43, 93, 137, 246
FaqI GGGAC 1 cut(s) 71
FatI CATG 4 cut(s) 39, 89, 133, 242
FauNDI CATATG 1 cut(s) 34
Fnu4HI GCNGC 2 cut(s) 30, 156
FokI GGATG 2 cut(s) 200, 213
Fsp4HI GCNGC 2 cut(s) 30, 156
GluI GCNGC 2 cut(s) 30, 156
HapII CCGG 1 cut(s) 18
Hin1II CATG 4 cut(s) 43, 93, 137, 246
HinfI GANTC 3 cut(s) 65, 95, 161
HpaII CCGG 1 cut(s) 18
HphI GGTGA 2 cut(s) 90, 258
Hpy188I TCNGA 1 cut(s) 150
HpyAV CCTTC 2 cut(s) 145, 155
HpyCH4IV ACGT 1 cut(s) 70
HpyCH4V TGCA 3 cut(s) 133, 190, 299
HpyF10VI GCNNNNNNNGC 2 cut(s) 164, 315
HpyF3I CTNAG 1 cut(s) 231
HpySE526I ACGT 1 cut(s) 70
Hsp92II CATG 4 cut(s) 43, 93, 137, 246
Kzo9I GATC 1 cut(s) 248
LpnPI CCDG 4 cut(s) 31, 68, 163, 186
Lsp1109I GCAGC 2 cut(s) 41, 167
MaeII ACGT 1 cut(s) 70
MaeIII GTNAC 2 cut(s) 66, 264
MalI GATC 1 cut(s) 250
MboI GATC 1 cut(s) 248
MboII GAAGA 1 cut(s) 247
MhlI GDGCHC 1 cut(s) 311
MlyI GAGTC 2 cut(s) 74, 89
MspA1I CMGCKG 1 cut(s) 158
MspI CCGG 1 cut(s) 18
MwoI GCNNNNNNNGC 2 cut(s) 164, 315
NdeI CATATG 1 cut(s) 34
NdeII GATC 1 cut(s) 248
NlaIII CATG 4 cut(s) 43, 93, 137, 246
NlaIV GGNNCC 1 cut(s) 87
NmuCI GTSAC 2 cut(s) 66, 264
NspI RCATGY 1 cut(s) 137
PfeI GAWTC 1 cut(s) 161
PkrI GCNGC 2 cut(s) 31, 157
PleI GAGTC 2 cut(s) 73, 89
PpsI GAGTC 2 cut(s) 73, 89
Ppu21I YACGTR 1 cut(s) 71
PpuMI RGGWCCY 1 cut(s) 85
Psp5II RGGWCCY 1 cut(s) 85
PspN4I GGNNCC 1 cut(s) 87
PspPI GGNCC 1 cut(s) 85
PspPPI RGGWCCY 1 cut(s) 85
PstI CTGCAG 1 cut(s) 301
PvuII CAGCTG 1 cut(s) 158
SatI GCNGC 2 cut(s) 30, 156
Sau3AI GATC 1 cut(s) 248
Sau96I GGNCC 1 cut(s) 85
SchI GAGTC 2 cut(s) 74, 89
SduI GDGCHC 1 cut(s) 311
SetI ASST 7 cut(s) 12, 73, 87, 160, 182, 271, 284
SfcI CTRYAG 1 cut(s) 297
SinI GGWCC 1 cut(s) 85
SsiI CCGC 1 cut(s) 175
TaiI ACGT 1 cut(s) 73
TfiI GAWTC 1 cut(s) 161
TseFI GTSAC 2 cut(s) 66, 264
TseI GCWGC 2 cut(s) 29, 155
Tsp45I GTSAC 2 cut(s) 66, 264
VpaK11BI GGWCC 1 cut(s) 85
XagI CCTNNNNNAGG 1 cut(s) 149
XceI RCATGY 1 cut(s) 137
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.