pycom05g21150

LRR-repeat protein

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr5
Physical Location & Seq
Reverse (-)
23832617 .. 23835675
3059 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 834 bp
ATGAAAGTAAACTTTGAGATGTGTAGGAATGGATTGAGGATAGAAATTGCTGTGAGGTGCAATGTTGAAGTGCTTCATCTTGTTGTCACTTATATTAGGTTTGGAGAGCTTCCTGCTTCCATCTTACACTGTAAATCGTTGAAATCTCTGCTTGTGGACATGAAGTGCACGATTAGTGATGTGCCCTCCATCGATTTTTTGTCTAATCCCGATTACCTGAGGCTGAAAGGTGTTTCGATAAAGGATGAAGATGATCAAATTTTGAAGTGGATTTCATGTTGCTGCACTTCCAAGAAGGAATTACTTCTTAAAGATTGTGGATTTTGGCATGAGTCTGATTACTACATCTACAAACGCCATGTTATTAACAGATCAGGTGACAGACTGAAAAACTTACATTTAAATCCACAGATTCGGAGGAAGACAAGGAAATTGGTCAATATTTATGCTCCAAACCTCAAGTGTTTGGAATGGTTTGGGGAATGTACGACTAGCCAAAATCTTGGAAACTTAATGTGCTTGGAGAAGGCTGAGATTTCTTCGTCAGTTCCGATCTGTAACTTTGATATCTTATTTGATTTTCTTTGTAGCATCCGCAAGGTTAAAGTTCTTACTCTGCATCCAGATATTCTTGAGCTTCTATGGTTTAATATGGACGATCAGAAATGGCAAGATCCTTCATTTATTTCTCAAGCCAAGGAGGTAGTTATACCATATGATGAATATGAGCCTGATATTGAGCCCGCATATTCTATTCTCGAACATCATGGCGTCCTTGAGATTTTGATGTTTTCTTGTATGTTGGCATCATTTCTTCACATACAGCAGATATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

278

Amino Acids

32.27

Weight (kDa)

6.15

Isoelectric Point (pI)

47.31

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0028824)

Species Orthologous Gene IDs
malus_domestica MD05G1234100.v1.1
pyrus_communis pycom05g21150

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 2 cut(s) 595, 744
AclWI GGATC 1 cut(s) 668
AcsI RAATTY 1 cut(s) 258
AcyI GRCGYC 1 cut(s) 771
AfaI GTAC 1 cut(s) 487
AgsI TTSAA 3 cut(s) 68, 142, 265
AluBI AGCT 2 cut(s) 109, 637
AluI AGCT 2 cut(s) 109, 637
Alw21I GWGCWC 1 cut(s) 170
Alw44I GTGCAC 1 cut(s) 166
AlwI GGATC 1 cut(s) 668
ApaLI GTGCAC 1 cut(s) 166
ApeKI GCWGC 1 cut(s) 282
ApoI RAATTY 1 cut(s) 258
Asp700I GAANNNNTTC 2 cut(s) 72, 303
AsuHPI GGTGA 1 cut(s) 389
AxyI CCTNAGG 1 cut(s) 218
BaeGI GKGCMC 2 cut(s) 170, 186
BanII GRGCYC 1 cut(s) 744
BbsI GAAGAC 1 cut(s) 428
Bbv12I GWGCWC 1 cut(s) 170
BbvI GCAGC 1 cut(s) 269
BccI CCATC 2 cut(s) 128, 197
BclI TGATCA 1 cut(s) 253
BfaI CTAG 1 cut(s) 492
BisI GCNGC 1 cut(s) 283
BlsI GCNGC 1 cut(s) 284
BmsI GCATC 3 cut(s) 600, 628, 815
BpiI GAAGAC 1 cut(s) 428
BpuEI CTTGAG 4 cut(s) 443, 653, 675, 797
Bsa29I ATCGAT 1 cut(s) 192
BsaHI GRCGYC 1 cut(s) 771
BsaJI CCNNGG 1 cut(s) 696
Bse21I CCTNAGG 1 cut(s) 218
Bse3DI GCAATG 1 cut(s) 67
BseCI ATCGAT 1 cut(s) 192
BseDI CCNNGG 1 cut(s) 696
BseGI GGATG 3 cut(s) 250, 591, 619
BseMI GCAATG 1 cut(s) 67
BseMII CTCAG 2 cut(s) 209, 522
BseSI GKGCMC 2 cut(s) 170, 186
BseXI GCAGC 1 cut(s) 269
BsgI GTGCAG 1 cut(s) 268
BshVI ATCGAT 1 cut(s) 192
BsiHKAI GWGCWC 1 cut(s) 170
Bsp1286I GDGCHC 3 cut(s) 170, 186, 744
Bsp143I GATC 5 cut(s) 253, 371, 552, 658, 673
BspACI CCGC 2 cut(s) 595, 744
BspCNI CTCAG 2 cut(s) 210, 523
BspDI ATCGAT 1 cut(s) 192
BspPI GGATC 1 cut(s) 668
BsrDI GCAATG 1 cut(s) 67
BssECI CCNNGG 1 cut(s) 696
BssMI GATC 5 cut(s) 253, 371, 552, 658, 673
BssNI GRCGYC 1 cut(s) 771
BssT1I CCWWGG 1 cut(s) 696
Bst4CI ACNGT 1 cut(s) 131
BstACI GRCGYC 1 cut(s) 771
BstC8I GCNNGC 1 cut(s) 744
BstDEI CTNAG 2 cut(s) 218, 531
BstF5I GGATG 3 cut(s) 250, 591, 619
BstKTI GATC 5 cut(s) 256, 374, 555, 661, 676
BstMBI GATC 5 cut(s) 253, 371, 552, 658, 673
BstSLI GKGCMC 2 cut(s) 170, 186
BstV1I GCAGC 1 cut(s) 269
BstV2I GAAGAC 1 cut(s) 428
BstX2I RGATCY 1 cut(s) 673
BstXI CCANNNNNNTGG 1 cut(s) 503
BstYI RGATCY 1 cut(s) 673
Bsu15I ATCGAT 1 cut(s) 192
Bsu36I CCTNAGG 1 cut(s) 218
BsuTUI ATCGAT 1 cut(s) 192
BtsCI GGATG 3 cut(s) 250, 591, 619
BtsIMutI CAGTG 1 cut(s) 127
Cac8I GCNNGC 1 cut(s) 744
ClaI ATCGAT 1 cut(s) 192
CseI GACGC 1 cut(s) 760
Csp6I GTAC 1 cut(s) 486
CviAII CATG 5 cut(s) 160, 276, 329, 359, 767
CviJI RGCY 8 cut(s) 109, 223, 495, 530, 637, 695, 730, 742
CviKI_1 RGCY 8 cut(s) 109, 223, 495, 530, 637, 695, 730, 742
CviQI GTAC 1 cut(s) 486
DdeI CTNAG 2 cut(s) 218, 531
DpnI GATC 5 cut(s) 255, 373, 554, 660, 675
DpnII GATC 5 cut(s) 253, 371, 552, 658, 673
DraI TTTAAA 1 cut(s) 402
Eco130I CCWWGG 1 cut(s) 696
Eco24I GRGCYC 1 cut(s) 744
Eco32I GATATC 1 cut(s) 568
Eco81I CCTNAGG 1 cut(s) 218
EcoRV GATATC 1 cut(s) 568
EcoT14I CCWWGG 1 cut(s) 696
EcoT38I GRGCYC 1 cut(s) 744
ErhI CCWWGG 1 cut(s) 696
FaeI CATG 5 cut(s) 163, 279, 332, 362, 770
FatI CATG 5 cut(s) 159, 275, 328, 358, 766
FauI CCCGC 1 cut(s) 751
FauNDI CATATG 1 cut(s) 715
FbaI TGATCA 1 cut(s) 253
Fnu4HI GCNGC 1 cut(s) 283
FokI GGATG 3 cut(s) 257, 578, 606
FriOI GRGCYC 1 cut(s) 744
Fsp4HI GCNGC 1 cut(s) 283
FspBI CTAG 1 cut(s) 492
GluI GCNGC 1 cut(s) 283
HgaI GACGC 1 cut(s) 760
Hin1I GRCGYC 1 cut(s) 771
Hin1II CATG 5 cut(s) 163, 279, 332, 362, 770
HinfI GANTC 2 cut(s) 332, 412
HphI GGTGA 1 cut(s) 389
Hpy166II GTNNAC 3 cut(s) 10, 157, 168
Hpy188I TCNGA 4 cut(s) 337, 417, 552, 663
Hpy188III TCNNGA 4 cut(s) 209, 623, 632, 758
Hpy8I GTNNAC 3 cut(s) 10, 157, 168
HpyAV CCTTC 3 cut(s) 289, 520, 687
HpyCH4III ACNGT 1 cut(s) 131
HpyCH4V TGCA 4 cut(s) 60, 168, 285, 619
HpyF3I CTNAG 2 cut(s) 218, 531
Hsp92I GRCGYC 1 cut(s) 771
Hsp92II CATG 5 cut(s) 163, 279, 332, 362, 770
Ksp22I TGATCA 1 cut(s) 253
Kzo9I GATC 5 cut(s) 253, 371, 552, 658, 673
LmnI GCTCC 1 cut(s) 454
LpnPI CCDG 5 cut(s) 126, 230, 360, 636, 744
Lsp1109I GCAGC 1 cut(s) 269
LweI GCATC 3 cut(s) 600, 628, 815
MaeI CTAG 1 cut(s) 492
MaeIII GTNAC 3 cut(s) 85, 377, 557
MalI GATC 5 cut(s) 255, 373, 554, 660, 675
MboI GATC 5 cut(s) 253, 371, 552, 658, 673
MboII GAAGA 4 cut(s) 260, 433, 531, 806
MflI RGATCY 1 cut(s) 673
MhlI GDGCHC 3 cut(s) 170, 186, 744
MluCI AATT 4 cut(s) 45, 258, 299, 431
MlyI GAGTC 1 cut(s) 341
MnlI CCTC 7 cut(s) 30, 48, 196, 213, 411, 467, 694
MroXI GAANNNNTTC 2 cut(s) 72, 303
MseI TTAA 6 cut(s) 309, 366, 401, 512, 603, 648
NdeI CATATG 1 cut(s) 715
NdeII GATC 5 cut(s) 253, 371, 552, 658, 673
NlaIII CATG 5 cut(s) 163, 279, 332, 362, 770
NmuCI GTSAC 2 cut(s) 85, 377
PcsI WCGNNNNNNNCGW 1 cut(s) 548
PdmI GAANNNNTTC 2 cut(s) 72, 303
PfeI GAWTC 1 cut(s) 412
PkrI GCNGC 1 cut(s) 284
PleI GAGTC 1 cut(s) 340
PpsI GAGTC 1 cut(s) 340
PsuI RGATCY 1 cut(s) 673
RsaI GTAC 1 cut(s) 487
RsaNI GTAC 1 cut(s) 486
SaqAI TTAA 6 cut(s) 309, 366, 401, 512, 603, 648
SatI GCNGC 1 cut(s) 283
Sau3AI GATC 5 cut(s) 253, 371, 552, 658, 673
SchI GAGTC 1 cut(s) 341
SduI GDGCHC 3 cut(s) 170, 186, 744
SfaNI GCATC 3 cut(s) 600, 628, 815
SmiI ATTTAAAT 1 cut(s) 402
SmlI CTYRAG 4 cut(s) 458, 632, 690, 776
SmoI CTYRAG 4 cut(s) 458, 632, 690, 776
Sse9I AATT 4 cut(s) 45, 258, 299, 431
SsiI CCGC 2 cut(s) 595, 744
SspI AATATT 1 cut(s) 442
SspMI CTAG 1 cut(s) 492
StyI CCWWGG 1 cut(s) 696
SwaI ATTTAAAT 1 cut(s) 402
TaaI ACNGT 1 cut(s) 131
TaqI TCGA 3 cut(s) 192, 236, 759
TasI AATT 4 cut(s) 45, 258, 299, 431
TfiI GAWTC 1 cut(s) 412
Tru1I TTAA 6 cut(s) 309, 366, 401, 512, 603, 648
Tru9I TTAA 6 cut(s) 309, 366, 401, 512, 603, 648
TscAI CASTG 1 cut(s) 134
TseFI GTSAC 2 cut(s) 85, 377
TseI GCWGC 1 cut(s) 282
Tsp45I GTSAC 2 cut(s) 85, 377
TspDTI ATGAA 7 cut(s) 17, 65, 176, 261, 264, 669, 735
TspRI CASTG 1 cut(s) 134
VneI GTGCAC 1 cut(s) 166
XapI RAATTY 1 cut(s) 258
XmnI GAANNNNTTC 2 cut(s) 72, 303
XspI CTAG 1 cut(s) 492
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.