pycom05g24000

The pyruvate dehydrogenase complex catalyzes the overall conversion of pyruvate to acetyl-CoA and CO(2)

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr5
Physical Location & Seq
Reverse (-)
25605216 .. 25606783
1568 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 225 bp
ATGTTGGGAATTTTAAGGCAAAAAGTGGGAGCTGGAAGCTCATCAGCTATGATTTTGGGGCGGAGGATCCGCCCCGCCACGTCGGCAATGAGGGGTTTCGCATCTTCGGCGAAAGAGCGGGCGATTCCAGAGGCCCTGCCATTGAGGTACCTAAAAGCTGCCAATTGGATTTGTTCCCCAGATGATAATGGTTGTTCTTTTGCTTTGATGTTGGTTGGTTGTTAA

Protein Analysis

75

Amino Acids

7.86

Weight (kDa)

10.07

Isoelectric Point (pI)

39.61

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0028756)

Species Orthologous Gene IDs
malus_domestica MD00G1047300.v1.1
pyrus_communis pycom05g24000

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc65I GGTACC 1 cut(s) 147
AccB1I GGYRCC 1 cut(s) 147
AccBSI CCGCTC 1 cut(s) 118
AciI CCGC 4 cut(s) 61, 70, 75, 118
AclWI GGATC 2 cut(s) 61, 74
AcsI RAATTY 1 cut(s) 9
AfaI GTAC 1 cut(s) 149
AjiI CACGTC 1 cut(s) 81
AluBI AGCT 4 cut(s) 32, 39, 47, 158
AluI AGCT 4 cut(s) 32, 39, 47, 158
AlwI GGATC 2 cut(s) 61, 74
AoxI GGCC 1 cut(s) 132
ApeKI GCWGC 1 cut(s) 158
ApoI RAATTY 1 cut(s) 9
Asp718I GGTACC 1 cut(s) 147
AspS9I GGNCC 1 cut(s) 133
BamHI GGATCC 1 cut(s) 66
BanI GGYRCC 1 cut(s) 147
BbvI GCAGC 1 cut(s) 145
BglI GCCNNNNNGGC 1 cut(s) 83
BisI GCNGC 1 cut(s) 159
BlsI GCNGC 1 cut(s) 160
BmgBI CACGTC 1 cut(s) 81
BmgT120I GGNCC 1 cut(s) 133
BmiI GGNNCC 2 cut(s) 68, 149
BmsI GCATC 1 cut(s) 110
Bse3DI GCAATG 1 cut(s) 93
BseMI GCAATG 1 cut(s) 93
BseXI GCAGC 1 cut(s) 145
BshFI GGCC 1 cut(s) 134
BshNI GGYRCC 1 cut(s) 147
BsnI GGCC 1 cut(s) 134
Bsp143I GATC 1 cut(s) 66
BspACI CCGC 4 cut(s) 61, 70, 75, 118
BspANI GGCC 1 cut(s) 134
BspLI GGNNCC 2 cut(s) 68, 149
BspPI GGATC 2 cut(s) 61, 74
BspT107I GGYRCC 1 cut(s) 147
BsrBI CCGCTC 1 cut(s) 118
BsrDI GCAATG 1 cut(s) 93
BssMI GATC 1 cut(s) 66
BstC8I GCNNGC 1 cut(s) 120
BstKTI GATC 1 cut(s) 69
BstMBI GATC 1 cut(s) 66
BstMWI GCNNNNNNNGC 2 cut(s) 83, 107
BstV1I GCAGC 1 cut(s) 145
BstX2I RGATCY 1 cut(s) 66
BstYI RGATCY 1 cut(s) 66
BsuRI GGCC 1 cut(s) 134
BtrI CACGTC 1 cut(s) 81
Cac8I GCNNGC 1 cut(s) 120
Cfr13I GGNCC 1 cut(s) 133
Csp6I GTAC 1 cut(s) 148
CviJI RGCY 5 cut(s) 32, 39, 47, 134, 158
CviKI_1 RGCY 5 cut(s) 32, 39, 47, 134, 158
CviQI GTAC 1 cut(s) 148
DpnI GATC 1 cut(s) 68
DpnII GATC 1 cut(s) 66
EciI GGCGGA 2 cut(s) 59, 76
EcoO109I RGGNCCY 1 cut(s) 133
FaiI YATR 1 cut(s) 50
FauI CCCGC 2 cut(s) 82, 111
Fnu4HI GCNGC 1 cut(s) 159
Fsp4HI GCNGC 1 cut(s) 159
GluI GCNGC 1 cut(s) 159
HaeIII GGCC 1 cut(s) 134
HinfI GANTC 1 cut(s) 124
Hpy188III TCNNGA 1 cut(s) 128
Hpy99I CGWCG 1 cut(s) 85
HpyCH4IV ACGT 1 cut(s) 80
HpyF10VI GCNNNNNNNGC 2 cut(s) 83, 107
HpySE526I ACGT 1 cut(s) 80
KpnI GGTACC 1 cut(s) 151
Kzo9I GATC 1 cut(s) 66
LmnI GCTCC 1 cut(s) 29
LpnPI CCDG 4 cut(s) 18, 141, 149, 192
Lsp1109I GCAGC 1 cut(s) 145
LweI GCATC 1 cut(s) 110
MaeII ACGT 1 cut(s) 80
MalI GATC 1 cut(s) 68
MbiI CCGCTC 1 cut(s) 118
MboI GATC 1 cut(s) 66
MboII GAAGA 1 cut(s) 96
MfeI CAATTG 1 cut(s) 163
MflI RGATCY 1 cut(s) 66
MluCI AATT 2 cut(s) 9, 163
MnlI CCTC 4 cut(s) 57, 84, 124, 138
MseI TTAA 2 cut(s) 14, 223
MunI CAATTG 1 cut(s) 163
MwoI GCNNNNNNNGC 2 cut(s) 83, 107
NdeII GATC 1 cut(s) 66
NlaIV GGNNCC 2 cut(s) 68, 149
PfeI GAWTC 1 cut(s) 124
PkrI GCNGC 1 cut(s) 160
PspN4I GGNNCC 2 cut(s) 68, 149
PspPI GGNCC 1 cut(s) 133
PsuI RGATCY 1 cut(s) 66
RsaI GTAC 1 cut(s) 149
RsaNI GTAC 1 cut(s) 148
SaqAI TTAA 2 cut(s) 14, 223
SatI GCNGC 1 cut(s) 159
Sau3AI GATC 1 cut(s) 66
Sau96I GGNCC 1 cut(s) 133
SetI ASST 7 cut(s) 34, 41, 49, 83, 149, 153, 160
SfaNI GCATC 1 cut(s) 110
SgeI CNNG 7 cut(s) 45, 86, 91, 131, 140, 148, 191
Sse9I AATT 2 cut(s) 9, 163
SsiI CCGC 4 cut(s) 61, 70, 75, 118
TaiI ACGT 1 cut(s) 83
TasI AATT 2 cut(s) 9, 163
TfiI GAWTC 1 cut(s) 124
Tru1I TTAA 2 cut(s) 14, 223
Tru9I TTAA 2 cut(s) 14, 223
TseI GCWGC 1 cut(s) 158
XapI RAATTY 1 cut(s) 9
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.