Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr5

Orthogroup ID

OG0028689

Physical Location & Seq

Genomic Coordinates Reverse (-)

25909686 .. 25910304

Gene Structure 619 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 456 bp

ATGCTGCCGTTTCTTGTCTACGAATTGTTGACTCCTCGCTTAACCTTTTGTCTTGCCAATATAATATTTTTTCTGTCTTTGTTGTGTAACATTCTCCCGTCACGATCTCTATATGTCAAGAACCTGAGCTTTAAGACATCGGACGAGAGTTTGAAAAAGCCTTTTAGTGAAAAAGTGAAGGAGGGAAAATTATTAAGTGTCAAGGTAAAGAAACACTTGAAGAATGGGAAGAACATTTCAATGGGGTTTGGTTTTCTGGAGTTTGATTCTGTGGAGACAGCTACAAATGTTTGCCGGGATTTACAGGGAATGATTTTGGACGGGCACTCTCTTATTTTGCAACCTTGTCATGCCAAGAAAGAAGAAGTGCCAAAGAAAGTTGACAAGAATAAAAGTTCTACAAAACTACTTGTGAAAAATGTAGCTTTTAAGGCCACAGAGAAAGAACTGAGATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000028 GO:0000447 GO:0000460 GO:0000462 GO:0000466 GO:0000469 GO:0000472 GO:0000478 GO:0000479 GO:0000480 GO:0000966 GO:0000967 GO:0003674 GO:0003676 GO:0003723 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005730 GO:0006139 GO:0006364 GO:0006396 GO:0006725 GO:0006807 GO:0006996 GO:0008150 GO:0008152 GO:0009987 GO:0010467 GO:0016043 GO:0016070 GO:0016072 GO:0019843 GO:0022607 GO:0022613 GO:0022618 GO:0030490 GO:0030684 GO:0030686 GO:0031974 GO:0031981 GO:0032991 GO:0034462 GO:0034470 GO:0034471 GO:0034622 GO:0034641 GO:0034660 GO:0042134 GO:0042254 GO:0042255 GO:0042274 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0043933 GO:0044085 GO:0044237 GO:0044238 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044464 GO:0046483 GO:0065003 GO:0070013 GO:0070925 GO:0071704 GO:0071826 GO:0071840 GO:0090304 GO:0090305 GO:0090501 GO:0090502 GO:0097159 GO:1901360 GO:1901363 GO:1990904

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

RRM_1

Protein Analysis

152

Amino Acids

17.12

Weight (kDa)

9.6

Isoelectric Point (pI)

42.32

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
RRM_1	PF00076	37 - 111	1.1e-10	RNA recognition motif

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Publication-ready

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Orthologous Genes (Group: OG0028689)

Species	Orthologous Gene IDs
malus_domestica	MD04G1088400.v1.1
pyrus_communis	pycom05g24330

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	18
AgsI	TTSAA	3 cut(s)	154, 220, 240
AluBI	AGCT	3 cut(s)	129, 281, 425
AluI	AGCT	3 cut(s)	129, 281, 425
Alw26I	GTCTC	1 cut(s)	269
AoxI	GGCC	1 cut(s)	432
ApeKI	GCWGC	1 cut(s)	4
AsuC2I	CCSGG	1 cut(s)	296
BaeGI	GKGCMC	1 cut(s)	327
BcnI	CCSGG	1 cut(s)	296
BcoDI	GTCTC	1 cut(s)	269
BisI	GCNGC	1 cut(s)	5
BlsI	GCNGC	1 cut(s)	6
Bme1390I	CCNGG	1 cut(s)	296
BmrFI	CCNGG	1 cut(s)	296
BpmI	CTGGAG	1 cut(s)	278
Bpu10I	CCTNAGC	1 cut(s)	125
BpuMI	CCSGG	1 cut(s)	296
BseMII	CTCAG	2 cut(s)	116, 440
BseRI	GAGGAG	1 cut(s)	24
BseSI	GKGCMC	1 cut(s)	327
BshFI	GGCC	1 cut(s)	434
BsiSI	CCGG	1 cut(s)	295
BsmAI	GTCTC	1 cut(s)	269
BsnI	GGCC	1 cut(s)	434
Bsp1286I	GDGCHC	1 cut(s)	327
Bsp143I	GATC	1 cut(s)	104
BspANI	GGCC	1 cut(s)	434
BspCNI	CTCAG	2 cut(s)	117, 441
BssMI	GATC	1 cut(s)	104
BstDEI	CTNAG	2 cut(s)	125, 449
BstKTI	GATC	1 cut(s)	107
BstMAI	GTCTC	1 cut(s)	269
BstMBI	GATC	1 cut(s)	104
BstMWI	GCNNNNNNNGC	1 cut(s)	431
BstSCI	CCNGG	1 cut(s)	294
BstSLI	GKGCMC	1 cut(s)	327
BsuRI	GGCC	1 cut(s)	434
CviAII	CATG	1 cut(s)	350
CviJI	RGCY	5 cut(s)	129, 160, 281, 425, 434
CviKI_1	RGCY	5 cut(s)	129, 160, 281, 425, 434
DdeI	CTNAG	2 cut(s)	125, 449
DpnI	GATC	1 cut(s)	106
DpnII	GATC	1 cut(s)	104
FaeI	CATG	1 cut(s)	353
FaiI	YATR	4 cut(s)	62, 112, 114, 351
FalI	AAGNNNNNCTT	2 cut(s)	200, 232
FatI	CATG	1 cut(s)	349
FblI	GTMKAC	1 cut(s)	18
Fnu4HI	GCNGC	1 cut(s)	5
Fsp4HI	GCNGC	1 cut(s)	5
GluI	GCNGC	1 cut(s)	5
GsuI	CTGGAG	1 cut(s)	278
HaeIII	GGCC	1 cut(s)	434
HapII	CCGG	1 cut(s)	295
Hin1II	CATG	1 cut(s)	353
HincII	GTYRAC	2 cut(s)	30, 382
HindII	GTYRAC	2 cut(s)	30, 382
HinfI	GANTC	2 cut(s)	31, 266
HpaII	CCGG	1 cut(s)	295
Hpy166II	GTNNAC	3 cut(s)	19, 30, 382
Hpy188I	TCNGA	1 cut(s)	142
Hpy188III	TCNNGA	3 cut(s)	102, 118, 257
Hpy8I	GTNNAC	3 cut(s)	19, 30, 382
HpyAV	CCTTC	1 cut(s)	172
HpyCH4V	TGCA	1 cut(s)	340
HpyF10VI	GCNNNNNNNGC	1 cut(s)	431
HpyF3I	CTNAG	2 cut(s)	125, 449
Hsp92II	CATG	1 cut(s)	353
Kzo9I	GATC	1 cut(s)	104
LpnPI	CCDG	4 cut(s)	137, 242, 290, 308
MaeIII	GTNAC	2 cut(s)	86, 99
MalI	GATC	1 cut(s)	106
MboI	GATC	1 cut(s)	104
MboII	GAAGA	3 cut(s)	232, 241, 374
MhlI	GDGCHC	1 cut(s)	327
MluCI	AATT	2 cut(s)	23, 188
MlyI	GAGTC	1 cut(s)	25
MnlI	CCTC	2 cut(s)	45, 175
MseI	TTAA	4 cut(s)	41, 132, 194, 429
MslI	CAYNNNNRTG	1 cut(s)	239
MspI	CCGG	1 cut(s)	295
MspR9I	CCNGG	1 cut(s)	296
MwoI	GCNNNNNNNGC	1 cut(s)	431
NciI	CCSGG	1 cut(s)	296
NdeII	GATC	1 cut(s)	104
NlaIII	CATG	1 cut(s)	353
NmuCI	GTSAC	1 cut(s)	99
PfeI	GAWTC	1 cut(s)	266
PkrI	GCNGC	1 cut(s)	6
PleI	GAGTC	1 cut(s)	25
PpsI	GAGTC	1 cut(s)	25
RseI	CAYNNNNRTG	1 cut(s)	239
SaqAI	TTAA	4 cut(s)	41, 132, 194, 429
SatI	GCNGC	1 cut(s)	5
Sau3AI	GATC	1 cut(s)	104
SchI	GAGTC	1 cut(s)	25
ScrFI	CCNGG	1 cut(s)	296
SduI	GDGCHC	1 cut(s)	327
SetI	ASST	7 cut(s)	47, 126, 131, 207, 283, 346, 427
SmiMI	CAYNNNNRTG	1 cut(s)	239
Sse9I	AATT	2 cut(s)	23, 188
SspI	AATATT	1 cut(s)	66
StyD4I	CCNGG	1 cut(s)	294
TasI	AATT	2 cut(s)	23, 188
TfiI	GAWTC	1 cut(s)	266
Tru1I	TTAA	4 cut(s)	41, 132, 194, 429
Tru9I	TTAA	4 cut(s)	41, 132, 194, 429
TseFI	GTSAC	1 cut(s)	99
TseI	GCWGC	1 cut(s)	4
Tsp45I	GTSAC	1 cut(s)	99
XmiI	GTMKAC	1 cut(s)	18

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.