pycom05g24340

Multiple RNA-binding domain-containing protein

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr5
Physical Location & Seq
Reverse (-)
25912743 .. 25913132
390 bp
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UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 390 bp
ATGAAAAGCGGGAGTCTTGAGGCTAAGTCGAAATTGTGGGCGAACGACACGGTGGTGGCTCCTGTGGCTGACAAAATTGGGAAGAGCAAAAAGGAAAGTGAGGAGAAATCAGGAGCTGAGAAAATTGGAAAAACGAAGAAGGAAAGTGAGCAGAAATCAGTTCTGGTGGATATGGAGGAGGCAGAGAAAGGTGCTAAGAAGAATGATAAACGCAATGTAGCTAAGGACGATGTTGTTTCGGATATGGATTACTTCAAGAGCAGAGTGAAGACTGAATGGTCGGATTCCAAAAGCAGTGAAGAAGATGATAATGAGGAGGAGGAGGAGGAGGAGAAAGAGTTTCGAAAAGTCAATGAGGAGGAGGAGGAAGTATGGTGTGAGCAAAGGTGA

Protein Analysis

130

Amino Acids

14.81

Weight (kDa)

4.74

Isoelectric Point (pI)

55.05

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0028841)

Species Orthologous Gene IDs
malus_domestica MD05G1258800.v1.1
pyrus_communis pycom05g24340

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 277
AciI CCGC 1 cut(s) 9
AgsI TTSAA 1 cut(s) 256
AleI CACNNNNGTG 1 cut(s) 53
AluBI AGCT 2 cut(s) 116, 221
AluI AGCT 2 cut(s) 116, 221
AlwNI CAGNNNCTG 1 cut(s) 116
AsuII TTCGAA 1 cut(s) 343
BbsI GAAGAC 1 cut(s) 275
BmiI GGNNCC 1 cut(s) 60
BpiI GAAGAC 1 cut(s) 275
Bpu10I CCTNAGC 1 cut(s) 222
Bpu14I TTCGAA 1 cut(s) 343
BpuEI CTTGAG 1 cut(s) 38
BsaXI ACNNNNNCTCC 2 cut(s) 323, 353
Bse3DI GCAATG 1 cut(s) 220
BseMI GCAATG 1 cut(s) 220
BseMII CTCAG 1 cut(s) 108
Bsp119I TTCGAA 1 cut(s) 343
BspACI CCGC 1 cut(s) 9
BspCNI CTCAG 1 cut(s) 109
BspLI GGNNCC 1 cut(s) 60
BspQI GCTCTTC 1 cut(s) 77
BspT104I TTCGAA 1 cut(s) 343
BsrDI GCAATG 1 cut(s) 220
Bst4CI ACNGT 1 cut(s) 52
Bst6I CTCTTC 1 cut(s) 77
BstBI TTCGAA 1 cut(s) 343
BstDEI CTNAG 4 cut(s) 24, 117, 195, 222
BstMWI GCNNNNNNNGC 1 cut(s) 65
BstV2I GAAGAC 1 cut(s) 275
BtsI GCAGTG 1 cut(s) 301
BtsIMutI CAGTG 1 cut(s) 301
CaiI CAGNNNCTG 1 cut(s) 116
CviJI RGCY 5 cut(s) 23, 59, 68, 116, 221
CviKI_1 RGCY 5 cut(s) 23, 59, 68, 116, 221
DdeI CTNAG 4 cut(s) 24, 117, 195, 222
DrdI GACNNNNNNGTC 1 cut(s) 277
DseDI GACNNNNNNGTC 1 cut(s) 277
Eam1104I CTCTTC 1 cut(s) 77
EarI CTCTTC 1 cut(s) 77
FaiI YATR 3 cut(s) 173, 245, 373
FauI CCCGC 1 cut(s) 2
HinfI GANTC 2 cut(s) 13, 284
Hpy188I TCNGA 2 cut(s) 241, 283
Hpy188III TCNNGA 3 cut(s) 17, 111, 256
HpyAV CCTTC 1 cut(s) 133
HpyCH4III ACNGT 1 cut(s) 52
HpyF10VI GCNNNNNNNGC 1 cut(s) 65
HpyF3I CTNAG 4 cut(s) 24, 117, 195, 222
LguI GCTCTTC 1 cut(s) 77
LmnI GCTCC 2 cut(s) 64, 113
LpnPI CCDG 3 cut(s) 75, 96, 149
MboII GAAGA 6 cut(s) 94, 148, 211, 280, 311, 314
MluCI AATT 3 cut(s) 32, 75, 123
MlyI GAGTC 1 cut(s) 22
MmeI TCCRAC 1 cut(s) 261
MslI CAYNNNNRTG 1 cut(s) 53
MwoI GCNNNNNNNGC 1 cut(s) 65
NlaIV GGNNCC 1 cut(s) 60
NspV TTCGAA 1 cut(s) 343
OliI CACNNNNGTG 1 cut(s) 53
PciSI GCTCTTC 1 cut(s) 77
PfeI GAWTC 1 cut(s) 284
PleI GAGTC 1 cut(s) 21
PpsI GAGTC 1 cut(s) 21
PspN4I GGNNCC 1 cut(s) 60
PstNI CAGNNNCTG 1 cut(s) 116
RseI CAYNNNNRTG 1 cut(s) 53
SapI GCTCTTC 1 cut(s) 77
SchI GAGTC 1 cut(s) 22
SetI ASST 4 cut(s) 118, 193, 223, 389
SfuI TTCGAA 1 cut(s) 343
SgeI CNNG 7 cut(s) 22, 29, 61, 74, 123, 176, 268
SmiMI CAYNNNNRTG 1 cut(s) 53
SmlI CTYRAG 1 cut(s) 17
SmoI CTYRAG 1 cut(s) 17
Sse9I AATT 3 cut(s) 32, 75, 123
SsiI CCGC 1 cut(s) 9
TaaI ACNGT 1 cut(s) 52
TaqI TCGA 2 cut(s) 29, 343
TasI AATT 3 cut(s) 32, 75, 123
TfiI GAWTC 1 cut(s) 284
TscAI CASTG 1 cut(s) 301
TspDTI ATGAA 1 cut(s) 17
TspRI CASTG 1 cut(s) 301
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.