Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr5

Orthogroup ID

OG0029283

Physical Location & Seq

Genomic Coordinates Forward (+)

26311074 .. 26311361

Gene Structure 288 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 288 bp

ATGATTGGGCAGGTAGCAGGTGGAGGAAGAACAGAAAAGCCAATGCTCAAGGCTGGCAATGCTTACCACAAGTTCAGAGTGAAGAGGAACTGCTGGCCCAAGGTTCGTGGTGTGGCTATGAACCCGGTCGAGCATCCTCACGGAGGAGGTAATCACCAGCATATTGGACATGCTAGCACAGTCAGGCGCGACGCTCCTCCTGGGCAGAAGGTTGGTCTCATTGCCGCTAGGAGGACTGGTCGTCTCAGAGGACAAGCTGCTGCCAACATATCTAAGGCAGACAAGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0002181 GO:0003674 GO:0003676 GO:0003723 GO:0003735 GO:0005198 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0005840 GO:0006412 GO:0006518 GO:0006807 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009987 GO:0010467 GO:0015934 GO:0019538 GO:0022625 GO:0022626 GO:0032991 GO:0034641 GO:0034645 GO:0043043 GO:0043170 GO:0043226 GO:0043228 GO:0043229 GO:0043232 GO:0043603 GO:0043604 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044267 GO:0044271 GO:0044391 GO:0044422 GO:0044424 GO:0044444 GO:0044445 GO:0044446 GO:0044464 GO:0071704 GO:0097159 GO:1901363 GO:1901564 GO:1901566 GO:1901576 GO:1990904

KEGG Pathways

Metabolic & Signaling

ko03010 map03010

Pfam Domains

Protein Families

Ribosomal_L2 Ribosomal_L2_C

Protein Analysis

96

Amino Acids

10.19

Weight (kDa)

11.67

Isoelectric Point (pI)

42.24

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Ribosomal_L2_C	PF03947	1 - 61	5.5e-19	Ribosomal Proteins L2, C-terminal domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Orthologous Genes (Group: OG0029283)

Species	Orthologous Gene IDs
pyrus_communis	pycom05g24800
rosa_roxburghii	Rroxscaffold_1G00059420

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	8
Acc36I	ACCTGC	1 cut(s)	8
AccII	CGCG	1 cut(s)	189
AciI	CCGC	1 cut(s)	225
AfiI	CCNNNNNNNGG	2 cut(s)	143, 231
AhdI	GACNNNNNGTC	1 cut(s)	240
AjnI	CCWGG	1 cut(s)	199
AluBI	AGCT	1 cut(s)	257
AluI	AGCT	1 cut(s)	257
Alw26I	GTCTC	2 cut(s)	221, 248
AoxI	GGCC	1 cut(s)	95
ApeKI	GCWGC	2 cut(s)	257, 260
AspLEI	GCGC	1 cut(s)	189
AspS9I	GGNCC	1 cut(s)	96
AsuC2I	CCSGG	1 cut(s)	125
AsuHPI	GGTGA	1 cut(s)	146
AsuNHI	GCTAGC	1 cut(s)	173
BbvI	GCAGC	2 cut(s)	244, 247
BciT130I	CCWGG	1 cut(s)	201
BcnI	CCSGG	1 cut(s)	125
BcoDI	GTCTC	2 cut(s)	221, 248
BfaI	CTAG	2 cut(s)	174, 228
BfuAI	ACCTGC	1 cut(s)	8
BisI	GCNGC	3 cut(s)	225, 258, 261
BlsI	GCNGC	3 cut(s)	226, 259, 262
Bme1390I	CCNGG	2 cut(s)	125, 201
BmeRI	GACNNNNNGTC	1 cut(s)	240
BmgT120I	GGNCC	1 cut(s)	96
BmrFI	CCNGG	2 cut(s)	125, 201
BmsI	GCATC	1 cut(s)	142
BmtI	GCTAGC	1 cut(s)	177
BpuEI	CTTGAG	1 cut(s)	32
BpuMI	CCSGG	1 cut(s)	125
BsaI	GGTCTC	1 cut(s)	221
BsaJI	CCNNGG	2 cut(s)	99, 200
BsaXI	ACNNNNNCTCC	2 cut(s)	223, 253
Bsc4I	CCNNNNNNNGG	2 cut(s)	143, 231
Bse1I	ACTGG	1 cut(s)	241
Bse3DI	GCAATG	2 cut(s)	64, 219
BseBI	CCWGG	1 cut(s)	201
BseDI	CCNNGG	2 cut(s)	99, 200
BseGI	GGATG	1 cut(s)	133
BseLI	CCNNNNNNNGG	2 cut(s)	143, 231
BseMI	GCAATG	2 cut(s)	64, 219
BseMII	CTCAG	1 cut(s)	259
BseNI	ACTGG	1 cut(s)	241
BseRI	GAGGAG	2 cut(s)	159, 186
BseXI	GCAGC	2 cut(s)	244, 247
Bsh1236I	CGCG	1 cut(s)	189
Bsh1285I	CGRYCG	1 cut(s)	129
BshFI	GGCC	1 cut(s)	97
BsiEI	CGRYCG	1 cut(s)	129
BsiSI	CCGG	1 cut(s)	125
BslI	CCNNNNNNNGG	2 cut(s)	143, 231
BsmAI	GTCTC	2 cut(s)	221, 248
BsmBI	CGTCTC	1 cut(s)	248
BsnI	GGCC	1 cut(s)	97
Bso31I	GGTCTC	1 cut(s)	221
BspACI	CCGC	1 cut(s)	225
BspANI	GGCC	1 cut(s)	97
BspCNI	CTCAG	1 cut(s)	258
BspFNI	CGCG	1 cut(s)	189
BspMI	ACCTGC	1 cut(s)	8
BspOI	GCTAGC	1 cut(s)	177
BspTNI	GGTCTC	1 cut(s)	221
BsrDI	GCAATG	2 cut(s)	64, 219
BsrI	ACTGG	1 cut(s)	241
BssECI	CCNNGG	2 cut(s)	99, 200
BssT1I	CCWWGG	1 cut(s)	99
Bst2UI	CCWGG	1 cut(s)	201
Bst4CI	ACNGT	1 cut(s)	181
Bst6I	CTCTTC	1 cut(s)	77
BstC8I	GCNNGC	3 cut(s)	55, 95, 175
BstDEI	CTNAG	2 cut(s)	245, 273
BstENI	CCTNNNNNAGG	1 cut(s)	141
BstF5I	GGATG	1 cut(s)	133
BstFNI	CGCG	1 cut(s)	189
BstHHI	GCGC	1 cut(s)	189
BstMAI	GTCTC	2 cut(s)	221, 248
BstMCI	CGRYCG	1 cut(s)	129
BstMWI	GCNNNNNNNGC	1 cut(s)	59
BstNI	CCWGG	1 cut(s)	201
BstNSI	RCATGY	1 cut(s)	173
BstSCI	CCNGG	2 cut(s)	123, 199
BstUI	CGCG	1 cut(s)	189
BstV1I	GCAGC	2 cut(s)	244, 247
BstXI	CCANNNNNNTGG	1 cut(s)	164
BsuRI	GGCC	1 cut(s)	97
BtsCI	GGATG	1 cut(s)	133
BveI	ACCTGC	1 cut(s)	8
Cac8I	GCNNGC	3 cut(s)	55, 95, 175
CfoI	GCGC	1 cut(s)	189
Cfr13I	GGNCC	1 cut(s)	96
CseI	GACGC	1 cut(s)	200
CspCI	CAANNNNNGTGG	2 cut(s)	88, 123
CviAII	CATG	1 cut(s)	170
CviJI	RGCY	5 cut(s)	40, 53, 97, 116, 257
CviKI_1	RGCY	5 cut(s)	40, 53, 97, 116, 257
DdeI	CTNAG	2 cut(s)	245, 273
DriI	GACNNNNNGTC	1 cut(s)	240
Eam1104I	CTCTTC	1 cut(s)	77
Eam1105I	GACNNNNNGTC	1 cut(s)	240
EarI	CTCTTC	1 cut(s)	77
Eco130I	CCWWGG	1 cut(s)	99
Eco31I	GGTCTC	1 cut(s)	221
EcoNI	CCTNNNNNAGG	1 cut(s)	141
EcoRII	CCWGG	1 cut(s)	199
EcoT14I	CCWWGG	1 cut(s)	99
ErhI	CCWWGG	1 cut(s)	99
Esp3I	CGTCTC	1 cut(s)	248
FaeI	CATG	1 cut(s)	173
FaiI	YATR	4 cut(s)	119, 162, 171, 269
FatI	CATG	1 cut(s)	169
Fnu4HI	GCNGC	3 cut(s)	225, 258, 261
FokI	GGATG	1 cut(s)	120
Fsp4HI	GCNGC	3 cut(s)	225, 258, 261
FspBI	CTAG	2 cut(s)	174, 228
GlaI	GCGC	1 cut(s)	188
GluI	GCNGC	3 cut(s)	225, 258, 261
HaeIII	GGCC	1 cut(s)	97
HapII	CCGG	1 cut(s)	125
HgaI	GACGC	1 cut(s)	200
HhaI	GCGC	1 cut(s)	189
Hin1II	CATG	1 cut(s)	173
Hin6I	GCGC	1 cut(s)	187
HinP1I	GCGC	1 cut(s)	187
HpaII	CCGG	1 cut(s)	125
HphI	GGTGA	1 cut(s)	146
Hpy188I	TCNGA	2 cut(s)	77, 248
Hpy99I	CGWCG	1 cut(s)	194
HpyAV	CCTTC	1 cut(s)	202
HpyCH4III	ACNGT	1 cut(s)	181
HpyF10VI	GCNNNNNNNGC	1 cut(s)	59
HpyF3I	CTNAG	2 cut(s)	245, 273
Hsp92II	CATG	1 cut(s)	173
HspAI	GCGC	1 cut(s)	187
LmnI	GCTCC	1 cut(s)	199
LpnPI	CCDG	9 cut(s)	3, 39, 79, 138, 169, 170, 186, 213, 222
Lsp1109I	GCAGC	2 cut(s)	244, 247
LweI	GCATC	1 cut(s)	142
MaeI	CTAG	2 cut(s)	174, 228
MboII	GAAGA	2 cut(s)	39, 94
MnlI	CCTC	8 cut(s)	17, 78, 137, 140, 147, 207, 225, 242
MspI	CCGG	1 cut(s)	125
MspR9I	CCNGG	2 cut(s)	125, 201
MvaI	CCWGG	1 cut(s)	201
MvnI	CGCG	1 cut(s)	189
MwoI	GCNNNNNNNGC	1 cut(s)	59
NciI	CCSGG	1 cut(s)	125
NheI	GCTAGC	1 cut(s)	173
NlaIII	CATG	1 cut(s)	173
NspI	RCATGY	1 cut(s)	173
PaqCI	CACCTGC	1 cut(s)	8
PkrI	GCNGC	3 cut(s)	226, 259, 262
Psp6I	CCWGG	1 cut(s)	199
PspGI	CCWGG	1 cut(s)	199
PspPI	GGNCC	1 cut(s)	96
SatI	GCNGC	3 cut(s)	225, 258, 261
Sau96I	GGNCC	1 cut(s)	96
ScrFI	CCNGG	2 cut(s)	125, 201
SetI	ASST	6 cut(s)	15, 22, 105, 151, 213, 259
SfaNI	GCATC	1 cut(s)	142
SmlI	CTYRAG	1 cut(s)	47
SmoI	CTYRAG	1 cut(s)	47
SsiI	CCGC	1 cut(s)	225
SspMI	CTAG	2 cut(s)	174, 228
StyD4I	CCNGG	2 cut(s)	123, 199
StyI	CCWWGG	1 cut(s)	99
TaaI	ACNGT	1 cut(s)	181
TaqI	TCGA	1 cut(s)	129
TauI	GCSGC	1 cut(s)	227
TseI	GCWGC	2 cut(s)	257, 260
TspDTI	ATGAA	1 cut(s)	134
TspGWI	ACGGA	1 cut(s)	156
XagI	CCTNNNNNAGG	1 cut(s)	141
XceI	RCATGY	1 cut(s)	173
XspI	CTAG	2 cut(s)	174, 228

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.