Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000001

Orthogroup ID

OG0029283

Physical Location & Seq

Genomic Coordinates Forward (+)

81409824 .. 81411504

Gene Structure 1681 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_1G00059420.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 288 bp

ATGATTGGGCAGGTTGCAGGTGGTGGAAGAACAGAGAAGCCTATGCTCAAGGCTGGTAATGCCTACCACAAGTTCAGGGTGAAGAGAAACTGCTGGCCTAAGGTGCGTGGTGTGGCTATGAATCCAGTTGAGCATCCCCACGGAGGAGGTAACCACCAGCATATTGGACATGCTAGCACAGTCAGGCGTGATGCTCCCCCTGGGCAGAAGGTTGGTCTCATTGCTGCCAGGAGAACTGGTAGACTCAGAGGACAGGCTGCAGCTTTTGCTTCCAAGGATAAGGCTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0002181 GO:0003674 GO:0003676 GO:0003723 GO:0003735 GO:0005198 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0005840 GO:0006412 GO:0006518 GO:0006807 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009987 GO:0010467 GO:0015934 GO:0019538 GO:0022625 GO:0022626 GO:0032991 GO:0034641 GO:0034645 GO:0043043 GO:0043170 GO:0043226 GO:0043228 GO:0043229 GO:0043232 GO:0043603 GO:0043604 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044267 GO:0044271 GO:0044391 GO:0044422 GO:0044424 GO:0044444 GO:0044445 GO:0044446 GO:0044464 GO:0071704 GO:0097159 GO:1901363 GO:1901564 GO:1901566 GO:1901576 GO:1990904

KEGG Pathways

Metabolic & Signaling

ko03010 map03010

Pfam Domains

Protein Families

Ribosomal_L2 Ribosomal_L2_C

Protein Analysis

95

Amino Acids

10.18

Weight (kDa)

11.67

Isoelectric Point (pI)

38.51

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Ribosomal_L2_C	PF03947	1 - 61	5.5e-19	Ribosomal Proteins L2, C-terminal domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

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Genomic Context

Gene Family Tree

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Orthologous Genes (Group: OG0029283)

Species	Orthologous Gene IDs
pyrus_communis	pycom05g24800
rosa_roxburghii	Rroxscaffold_1G00059420

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	8
Acc36I	ACCTGC	1 cut(s)	8
AccI	GTMKAC	1 cut(s)	241
AfiI	CCNNNNNNNGG	1 cut(s)	143
AjnI	CCWGG	2 cut(s)	199, 227
AluBI	AGCT	1 cut(s)	263
AluI	AGCT	1 cut(s)	263
Alw26I	GTCTC	1 cut(s)	221
AoxI	GGCC	1 cut(s)	95
ApeKI	GCWGC	3 cut(s)	224, 257, 260
AsuHPI	GGTGA	1 cut(s)	91
AsuNHI	GCTAGC	1 cut(s)	173
AxyI	CCTNAGG	1 cut(s)	99
BbvI	GCAGC	3 cut(s)	211, 244, 272
BciT130I	CCWGG	2 cut(s)	201, 229
BcoDI	GTCTC	1 cut(s)	221
BfaI	CTAG	1 cut(s)	174
BfmI	CTRYAG	1 cut(s)	258
BfuAI	ACCTGC	1 cut(s)	8
BisI	GCNGC	3 cut(s)	225, 258, 261
BlsI	GCNGC	3 cut(s)	226, 259, 262
Bme1390I	CCNGG	2 cut(s)	201, 229
BmrFI	CCNGG	2 cut(s)	201, 229
BmsI	GCATC	2 cut(s)	142, 181
BmtI	GCTAGC	1 cut(s)	177
BpuEI	CTTGAG	1 cut(s)	32
BsaI	GGTCTC	1 cut(s)	221
BsaJI	CCNNGG	4 cut(s)	139, 199, 200, 273
BsaXI	ACNNNNNCTCC	2 cut(s)	223, 253
Bsc4I	CCNNNNNNNGG	1 cut(s)	143
Bse1I	ACTGG	2 cut(s)	125, 241
Bse21I	CCTNAGG	1 cut(s)	99
Bse3DI	GCAATG	1 cut(s)	219
BseBI	CCWGG	2 cut(s)	201, 229
BseDI	CCNNGG	4 cut(s)	139, 199, 200, 273
BseGI	GGATG	1 cut(s)	133
BseLI	CCNNNNNNNGG	1 cut(s)	143
BseMI	GCAATG	1 cut(s)	219
BseMII	CTCAG	1 cut(s)	259
BseNI	ACTGG	2 cut(s)	125, 241
BseRI	GAGGAG	1 cut(s)	159
BseXI	GCAGC	3 cut(s)	211, 244, 272
BshFI	GGCC	1 cut(s)	97
BslI	CCNNNNNNNGG	1 cut(s)	143
BsmAI	GTCTC	1 cut(s)	221
BsnI	GGCC	1 cut(s)	97
Bso31I	GGTCTC	1 cut(s)	221
BspANI	GGCC	1 cut(s)	97
BspCNI	CTCAG	1 cut(s)	258
BspMAI	CTGCAG	1 cut(s)	262
BspMI	ACCTGC	1 cut(s)	8
BspOI	GCTAGC	1 cut(s)	177
BspTNI	GGTCTC	1 cut(s)	221
BsrDI	GCAATG	1 cut(s)	219
BsrI	ACTGG	2 cut(s)	125, 241
BssECI	CCNNGG	4 cut(s)	139, 199, 200, 273
BssT1I	CCWWGG	1 cut(s)	273
Bst2UI	CCWGG	2 cut(s)	201, 229
Bst4CI	ACNGT	1 cut(s)	181
Bst6I	CTCTTC	1 cut(s)	77
BstAPI	GCANNNNNTGC	1 cut(s)	266
BstC8I	GCNNGC	2 cut(s)	95, 175
BstDEI	CTNAG	2 cut(s)	99, 245
BstDSI	CCRYGG	1 cut(s)	139
BstEII	GGTNACC	1 cut(s)	149
BstF5I	GGATG	1 cut(s)	133
BstMAI	GTCTC	1 cut(s)	221
BstMWI	GCNNNNNNNGC	3 cut(s)	59, 103, 266
BstNI	CCWGG	2 cut(s)	201, 229
BstNSI	RCATGY	1 cut(s)	173
BstPI	GGTNACC	1 cut(s)	149
BstSCI	CCNGG	2 cut(s)	199, 227
BstSFI	CTRYAG	1 cut(s)	258
BstV1I	GCAGC	3 cut(s)	211, 244, 272
BstXI	CCANNNNNNTGG	1 cut(s)	164
Bsu36I	CCTNAGG	1 cut(s)	99
BsuRI	GGCC	1 cut(s)	97
BtgI	CCRYGG	1 cut(s)	139
BtsCI	GGATG	1 cut(s)	133
BveI	ACCTGC	1 cut(s)	8
Cac8I	GCNNGC	2 cut(s)	95, 175
CviAII	CATG	1 cut(s)	170
CviJI	RGCY	7 cut(s)	40, 53, 97, 116, 257, 263, 284
CviKI_1	RGCY	7 cut(s)	40, 53, 97, 116, 257, 263, 284
DdeI	CTNAG	2 cut(s)	99, 245
Eam1104I	CTCTTC	1 cut(s)	77
EarI	CTCTTC	1 cut(s)	77
Eco130I	CCWWGG	1 cut(s)	273
Eco31I	GGTCTC	1 cut(s)	221
Eco81I	CCTNAGG	1 cut(s)	99
Eco91I	GGTNACC	1 cut(s)	149
EcoO65I	GGTNACC	1 cut(s)	149
EcoRII	CCWGG	2 cut(s)	199, 227
EcoT14I	CCWWGG	1 cut(s)	273
ErhI	CCWWGG	1 cut(s)	273
FaeI	CATG	1 cut(s)	173
FaiI	YATR	4 cut(s)	44, 119, 162, 171
FatI	CATG	1 cut(s)	169
FblI	GTMKAC	1 cut(s)	241
Fnu4HI	GCNGC	3 cut(s)	225, 258, 261
FokI	GGATG	1 cut(s)	120
Fsp4HI	GCNGC	3 cut(s)	225, 258, 261
FspBI	CTAG	1 cut(s)	174
GluI	GCNGC	3 cut(s)	225, 258, 261
HaeIII	GGCC	1 cut(s)	97
Hin1II	CATG	1 cut(s)	173
HinfI	GANTC	2 cut(s)	121, 243
HphI	GGTGA	1 cut(s)	91
Hpy166II	GTNNAC	1 cut(s)	242
Hpy188I	TCNGA	1 cut(s)	248
Hpy8I	GTNNAC	1 cut(s)	242
HpyAV	CCTTC	1 cut(s)	202
HpyCH4III	ACNGT	1 cut(s)	181
HpyCH4V	TGCA	2 cut(s)	17, 260
HpyF10VI	GCNNNNNNNGC	3 cut(s)	59, 103, 266
HpyF3I	CTNAG	2 cut(s)	99, 245
Hsp92II	CATG	1 cut(s)	173
LmnI	GCTCC	1 cut(s)	199
Lsp1109I	GCAGC	3 cut(s)	211, 244, 272
LweI	GCATC	2 cut(s)	142, 181
MaeI	CTAG	1 cut(s)	174
MaeIII	GTNAC	1 cut(s)	149
MboII	GAAGA	2 cut(s)	39, 94
MlyI	GAGTC	1 cut(s)	237
MnlI	CCTC	3 cut(s)	137, 140, 242
MseI	TTAA	1 cut(s)	286
MspR9I	CCNGG	2 cut(s)	201, 229
MvaI	CCWGG	2 cut(s)	201, 229
MwoI	GCNNNNNNNGC	3 cut(s)	59, 103, 266
NheI	GCTAGC	1 cut(s)	173
NlaIII	CATG	1 cut(s)	173
NspI	RCATGY	1 cut(s)	173
PaqCI	CACCTGC	1 cut(s)	8
PasI	CCCWGGG	1 cut(s)	200
PfeI	GAWTC	1 cut(s)	121
PkrI	GCNGC	3 cut(s)	226, 259, 262
PleI	GAGTC	1 cut(s)	237
PpsI	GAGTC	1 cut(s)	237
Psp6I	CCWGG	2 cut(s)	199, 227
PspEI	GGTNACC	1 cut(s)	149
PspGI	CCWGG	2 cut(s)	199, 227
PstI	CTGCAG	1 cut(s)	262
SaqAI	TTAA	1 cut(s)	286
SatI	GCNGC	3 cut(s)	225, 258, 261
SchI	GAGTC	1 cut(s)	237
ScrFI	CCNGG	2 cut(s)	201, 229
SetI	ASST	6 cut(s)	15, 22, 105, 151, 213, 265
SfaNI	GCATC	2 cut(s)	142, 181
SfcI	CTRYAG	1 cut(s)	258
SmlI	CTYRAG	1 cut(s)	47
SmoI	CTYRAG	1 cut(s)	47
SspMI	CTAG	1 cut(s)	174
StyD4I	CCNGG	2 cut(s)	199, 227
StyI	CCWWGG	1 cut(s)	273
TaaI	ACNGT	1 cut(s)	181
TfiI	GAWTC	1 cut(s)	121
Tru1I	TTAA	1 cut(s)	286
Tru9I	TTAA	1 cut(s)	286
TseI	GCWGC	3 cut(s)	224, 257, 260
TspDTI	ATGAA	1 cut(s)	134
TspGWI	ACGGA	1 cut(s)	156
XceI	RCATGY	1 cut(s)	173
XcmI	CCANNNNNNNNNTGG	1 cut(s)	161
XmiI	GTMKAC	1 cut(s)	241
XspI	CTAG	1 cut(s)	174

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.