pycom05g27000

No description available

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr5
Physical Location & Seq
Forward (+)
28087547 .. 28087839
293 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 207 bp
ATGGAAAGATATGTATCAGTAATATCATCATTTAGATTTTCCTCGTCTGGTTCTCATGCAAGTGGTCTTCGTGCTCCTCCGAAAGATGTCCAAAACACCGGTACCAATAGACCAACTGTTGATGATGACTTTATCAAATTTGAATATGTACCAAGTAATCGAAAAACTTTCCCAGCATCTCGCAAACGCTGTTTTAGACCGGTTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

69

Amino Acids

7.73

Weight (kDa)

10.27

Isoelectric Point (pI)

44.48

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0028747)

Species Orthologous Gene IDs
malus_domestica MD00G1093000.v1.1
pyrus_communis pycom05g27000

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc65I GGTACC 1 cut(s) 101
AccB1I GGYRCC 1 cut(s) 101
AcsI RAATTY 1 cut(s) 137
AfaI GTAC 2 cut(s) 103, 150
AgeI ACCGGT 2 cut(s) 98, 199
AgsI TTSAA 1 cut(s) 143
Alw21I GWGCWC 1 cut(s) 76
ApoI RAATTY 1 cut(s) 137
AsiGI ACCGGT 2 cut(s) 98, 199
Asp718I GGTACC 1 cut(s) 101
BaeI ACNNNNGTAYC 2 cut(s) 85, 118
BanI GGYRCC 1 cut(s) 101
BbsI GAAGAC 1 cut(s) 59
Bbv12I GWGCWC 1 cut(s) 76
BmiI GGNNCC 1 cut(s) 103
BmsI GCATC 1 cut(s) 185
BpiI GAAGAC 1 cut(s) 59
BsaBI GATNNNNATC 1 cut(s) 13
BsaWI WCCGGW 2 cut(s) 98, 199
Bse118I RCCGGY 2 cut(s) 98, 199
Bse8I GATNNNNATC 1 cut(s) 13
BseJI GATNNNNATC 1 cut(s) 13
BseRI GAGGAG 1 cut(s) 66
BseYI CCCAGC 1 cut(s) 172
BshNI GGYRCC 1 cut(s) 101
BshTI ACCGGT 2 cut(s) 98, 199
BsiHKAI GWGCWC 1 cut(s) 76
BsiSI CCGG 2 cut(s) 99, 200
Bsp1286I GDGCHC 1 cut(s) 76
BspLI GGNNCC 1 cut(s) 103
BspT107I GGYRCC 1 cut(s) 101
BsrFI RCCGGY 2 cut(s) 98, 199
BssAI RCCGGY 2 cut(s) 98, 199
Bst4CI ACNGT 1 cut(s) 118
BstV2I GAAGAC 1 cut(s) 59
Cfr10I RCCGGY 2 cut(s) 98, 199
Csp6I GTAC 2 cut(s) 102, 149
CspAI ACCGGT 2 cut(s) 98, 199
CviAII CATG 1 cut(s) 56
CviQI GTAC 2 cut(s) 102, 149
FaeI CATG 1 cut(s) 59
FaiI YATR 3 cut(s) 12, 57, 147
FatI CATG 1 cut(s) 55
GsaI CCCAGC 1 cut(s) 176
HapII CCGG 2 cut(s) 99, 200
Hin1II CATG 1 cut(s) 59
HpaII CCGG 2 cut(s) 99, 200
Hpy188I TCNGA 1 cut(s) 81
HpyCH4III ACNGT 1 cut(s) 118
HpyCH4V TGCA 1 cut(s) 59
Hsp92II CATG 1 cut(s) 59
KpnI GGTACC 1 cut(s) 105
LmnI GCTCC 1 cut(s) 79
LpnPI CCDG 3 cut(s) 33, 112, 186
LweI GCATC 1 cut(s) 185
MboII GAAGA 1 cut(s) 59
MhlI GDGCHC 1 cut(s) 76
MluCI AATT 1 cut(s) 137
MnlI CCTC 2 cut(s) 52, 87
MseI TTAA 1 cut(s) 205
MslI CAYNNNNRTG 1 cut(s) 60
MspI CCGG 2 cut(s) 99, 200
NlaIII CATG 1 cut(s) 59
NlaIV GGNNCC 1 cut(s) 103
PinAI ACCGGT 2 cut(s) 98, 199
PspFI CCCAGC 1 cut(s) 172
PspN4I GGNNCC 1 cut(s) 103
RsaI GTAC 2 cut(s) 103, 150
RsaNI GTAC 2 cut(s) 102, 149
RseI CAYNNNNRTG 1 cut(s) 60
SaqAI TTAA 1 cut(s) 205
SduI GDGCHC 1 cut(s) 76
SfaNI GCATC 1 cut(s) 185
SgeI CNNG 9 cut(s) 55, 60, 68, 72, 83, 111, 165, 185, 192
SmiMI CAYNNNNRTG 1 cut(s) 60
Sse9I AATT 1 cut(s) 137
TaaI ACNGT 1 cut(s) 118
TaqI TCGA 1 cut(s) 160
TasI AATT 1 cut(s) 137
Tru1I TTAA 1 cut(s) 205
Tru9I TTAA 1 cut(s) 205
XapI RAATTY 1 cut(s) 137
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.