Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr5

Orthogroup ID

OG0029286

Physical Location & Seq

Genomic Coordinates Forward (+)

29244013 .. 29245526

Gene Structure 1514 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom05g28590.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 534 bp

ATGAGGAGATTCTTCAGAGGCAAAGACGATTCTTCACCGCCGTCGCCGTCGCCGTCGCCGTCGTTCTCTCCCTCGCCTTCGCGATCGGTGACGGGTCCCCCGAGGCCGATACGGCTCGTCTACTGCGACGAGAATGGGAAGTTCCGGATGGATCAGGAGGCGGTCTCCATGCTGCAGCTCGTTAAGGAACCCATTGGTATCGTCGCGGTCTGCGGCCGTGCCCGCCAGGGCAAGAGCTTTATTCTGAACCAGCTTCTCGGAAGGAGTGGTGGATTTCAAGTAGCATCTACACATCGCCCATGTACGAAAGGGCTATGGTTGTGGAGTGCGCCCTTTAAGAGAACTGCATTAGATGGGACTGAATACAATCTATTACTGTTGGATACTGAAGGAATAGATGCTTTTGATCAGACGGAAACGTACAGCACACAGATATTTTCCTTAGCGGTTCTCCTATCTAGCATGTTTATTTACAACCAGATGGGTGGTATAGATGAAGGTTCACTTGATCGATCGCTCTTGTCACTCAAATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000166 GO:0001882 GO:0001883 GO:0002376 GO:0003674 GO:0005488 GO:0005515 GO:0005525 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005737 GO:0005794 GO:0005829 GO:0005856 GO:0006950 GO:0006952 GO:0006955 GO:0007154 GO:0007165 GO:0007166 GO:0008104 GO:0008150 GO:0009987 GO:0010033 GO:0012505 GO:0015629 GO:0017076 GO:0019001 GO:0019221 GO:0023052 GO:0031974 GO:0031981 GO:0032549 GO:0032550 GO:0032553 GO:0032555 GO:0032561 GO:0033036 GO:0033365 GO:0034097 GO:0034340 GO:0034341 GO:0034504 GO:0034612 GO:0034613 GO:0035639 GO:0036094 GO:0042221 GO:0042802 GO:0042803 GO:0043167 GO:0043168 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0044422 GO:0044424 GO:0044428 GO:0044444 GO:0044446 GO:0044464 GO:0045087 GO:0046983 GO:0048471 GO:0050789 GO:0050794 GO:0050896 GO:0051179 GO:0051641 GO:0051716 GO:0060333 GO:0060337 GO:0065007 GO:0070013 GO:0070555 GO:0070727 GO:0070887 GO:0071310 GO:0071345 GO:0071346 GO:0071347 GO:0071356 GO:0071357 GO:0097159 GO:0097367 GO:1901265 GO:1901363

KEGG Pathways

Metabolic & Signaling

ko04621 map04621

Pfam Domains

Protein Families

GBP GBP_C

Protein Analysis

178

Amino Acids

19.56

Weight (kDa)

8.86

Isoelectric Point (pI)

59.85

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
GBP	PF02263	46 - 171	1.3e-32	Guanylate-binding protein, N-terminal domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0029286)

Species	Orthologous Gene IDs
pyrus_communis	pycom05g28590 pycom10g24120

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	120
AccII	CGCG	2 cut(s)	82, 206
AccIII	TCCGGA	1 cut(s)	144
AciI	CCGC	6 cut(s)	38, 161, 206, 213, 223, 446
AclWI	GGATC	1 cut(s)	159
AcoI	YGGCCR	1 cut(s)	214
AcuI	CTGAAG	1 cut(s)	408
AfaI	GTAC	2 cut(s)	304, 422
AgsI	TTSAA	1 cut(s)	278
AjnI	CCWGG	1 cut(s)	225
AluBI	AGCT	3 cut(s)	178, 237, 253
AluI	AGCT	3 cut(s)	178, 237, 253
Alw26I	GTCTC	1 cut(s)	169
AlwI	GGATC	1 cut(s)	159
Ama87I	CYCGRG	1 cut(s)	100
Aor13HI	TCCGGA	1 cut(s)	144
AoxI	GGCC	2 cut(s)	104, 214
ApeKI	GCWGC	2 cut(s)	172, 175
AspLEI	GCGC	1 cut(s)	331
AspS9I	GGNCC	1 cut(s)	95
AsuHPI	GGTGA	2 cut(s)	27, 100
AvaI	CYCGRG	1 cut(s)	100
AvaII	GGWCC	1 cut(s)	95
BaeGI	GKGCMC	1 cut(s)	223
BbvI	GCAGC	2 cut(s)	159, 187
BccI	CCATC	3 cut(s)	142, 347, 475
BceAI	ACGGC	6 cut(s)	25, 31, 37, 43, 128, 201
BciT130I	CCWGG	1 cut(s)	227
BciVI	GTATCC	1 cut(s)	376
BclI	TGATCA	1 cut(s)	406
BcoDI	GTCTC	1 cut(s)	169
BfaI	CTAG	1 cut(s)	459
BfmI	CTRYAG	1 cut(s)	173
BfuI	GTATCC	1 cut(s)	376
BglI	GCCNNNNNGGC	1 cut(s)	112
BisI	GCNGC	3 cut(s)	173, 176, 214
BlsI	GCNGC	3 cut(s)	174, 177, 215
Bme1390I	CCNGG	1 cut(s)	227
Bme18I	GGWCC	1 cut(s)	95
BmeT110I	CYCGRG	1 cut(s)	100
BmgT120I	GGNCC	1 cut(s)	95
BmiI	GGNNCC	3 cut(s)	96, 97, 189
BmrFI	CCNGG	1 cut(s)	227
BmsI	GCATC	2 cut(s)	293, 388
BplI	GAGNNNNNCTC	2 cut(s)	149, 181
Bpu10I	CCTNAGC	1 cut(s)	442
Bsa29I	ATCGAT	1 cut(s)	511
BsaI	GGTCTC	1 cut(s)	169
BsaJI	CCNNGG	2 cut(s)	101, 226
BsaWI	WCCGGW	1 cut(s)	144
BseAI	TCCGGA	1 cut(s)	144
BseBI	CCWGG	1 cut(s)	227
BseCI	ATCGAT	1 cut(s)	511
BseDI	CCNNGG	2 cut(s)	101, 226
BseGI	GGATG	1 cut(s)	153
BseRI	GAGGAG	1 cut(s)	19
BseSI	GKGCMC	1 cut(s)	223
BseX3I	CGGCCG	1 cut(s)	214
BseXI	GCAGC	2 cut(s)	159, 187
Bsh1236I	CGCG	2 cut(s)	82, 206
Bsh1285I	CGRYCG	3 cut(s)	86, 217, 515
BshFI	GGCC	2 cut(s)	106, 216
BshVI	ATCGAT	1 cut(s)	511
BsiEI	CGRYCG	3 cut(s)	86, 217, 515
BsiHKCI	CYCGRG	1 cut(s)	100
BsiSI	CCGG	1 cut(s)	145
BslFI	GGGAC	2 cut(s)	81, 370
BsmAI	GTCTC	1 cut(s)	169
BsmFI	GGGAC	2 cut(s)	81, 370
BsnI	GGCC	2 cut(s)	106, 216
Bso31I	GGTCTC	1 cut(s)	169
BsoBI	CYCGRG	1 cut(s)	100
Bsp1286I	GDGCHC	1 cut(s)	223
Bsp13I	TCCGGA	1 cut(s)	144
Bsp143I	GATC	5 cut(s)	83, 151, 406, 508, 512
Bsp68I	TCGCGA	1 cut(s)	82
BspACI	CCGC	6 cut(s)	38, 161, 206, 213, 223, 446
BspANI	GGCC	2 cut(s)	106, 216
BspDI	ATCGAT	1 cut(s)	511
BspEI	TCCGGA	1 cut(s)	144
BspFNI	CGCG	2 cut(s)	82, 206
BspLI	GGNNCC	3 cut(s)	96, 97, 189
BspMAI	CTGCAG	1 cut(s)	177
BspPI	GGATC	1 cut(s)	159
BspTNI	GGTCTC	1 cut(s)	169
BssECI	CCNNGG	2 cut(s)	101, 226
BssMI	GATC	5 cut(s)	83, 151, 406, 508, 512
Bst2UI	CCWGG	1 cut(s)	227
Bst4CI	ACNGT	1 cut(s)	378
BstC8I	GCNNGC	1 cut(s)	223
BstDEI	CTNAG	1 cut(s)	442
BstF5I	GGATG	1 cut(s)	153
BstFNI	CGCG	2 cut(s)	82, 206
BstHHI	GCGC	1 cut(s)	331
BstKTI	GATC	5 cut(s)	86, 154, 409, 511, 515
BstMAI	GTCTC	1 cut(s)	169
BstMBI	GATC	5 cut(s)	83, 151, 406, 508, 512
BstMCI	CGRYCG	3 cut(s)	86, 217, 515
BstMWI	GCNNNNNNNGC	2 cut(s)	112, 222
BstNI	CCWGG	1 cut(s)	227
BstNSI	RCATGY	1 cut(s)	466
BstSCI	CCNGG	1 cut(s)	225
BstSFI	CTRYAG	1 cut(s)	173
BstSLI	GKGCMC	1 cut(s)	223
BstUI	CGCG	2 cut(s)	82, 206
BstV1I	GCAGC	2 cut(s)	159, 187
BstXI	CCANNNNNNTGG	1 cut(s)	485
BstZI	CGGCCG	1 cut(s)	214
Bsu15I	ATCGAT	1 cut(s)	511
BsuI	GTATCC	1 cut(s)	376
BsuRI	GGCC	2 cut(s)	106, 216
BsuTUI	ATCGAT	1 cut(s)	511
BtgZI	GCGATG	1 cut(s)	278
BtsCI	GGATG	1 cut(s)	153
BtuMI	TCGCGA	1 cut(s)	82
Cac8I	GCNNGC	1 cut(s)	223
CfoI	GCGC	1 cut(s)	331
Cfr13I	GGNCC	1 cut(s)	95
ClaI	ATCGAT	1 cut(s)	511
Csp6I	GTAC	2 cut(s)	303, 421
CviAII	CATG	3 cut(s)	169, 300, 463
CviJI	RGCY	7 cut(s)	106, 115, 178, 216, 237, 253, 313
CviKI_1	RGCY	7 cut(s)	106, 115, 178, 216, 237, 253, 313
CviQI	GTAC	2 cut(s)	303, 421
DdeI	CTNAG	1 cut(s)	442
DpnI	GATC	5 cut(s)	85, 153, 408, 510, 514
DpnII	GATC	5 cut(s)	83, 151, 406, 508, 512
EaeI	YGGCCR	1 cut(s)	214
EagI	CGGCCG	1 cut(s)	214
EclXI	CGGCCG	1 cut(s)	214
Eco31I	GGTCTC	1 cut(s)	169
Eco47I	GGWCC	1 cut(s)	95
Eco52I	CGGCCG	1 cut(s)	214
Eco57I	CTGAAG	1 cut(s)	408
Eco88I	CYCGRG	1 cut(s)	100
EcoO109I	RGGNCCY	1 cut(s)	95
EcoRII	CCWGG	1 cut(s)	225
FaeI	CATG	3 cut(s)	172, 303, 466
FaiI	YATR	5 cut(s)	170, 301, 316, 464, 491
FalI	AAGNNNNNCTT	2 cut(s)	489, 521
FaqI	GGGAC	2 cut(s)	81, 370
FatI	CATG	3 cut(s)	168, 299, 462
FauI	CCCGC	1 cut(s)	230
FbaI	TGATCA	1 cut(s)	406
FblI	GTMKAC	1 cut(s)	120
Fnu4HI	GCNGC	3 cut(s)	173, 176, 214
FokI	GGATG	1 cut(s)	160
Fsp4HI	GCNGC	3 cut(s)	173, 176, 214
FspBI	CTAG	1 cut(s)	459
GlaI	GCGC	1 cut(s)	330
GluI	GCNGC	3 cut(s)	173, 176, 214
HaeIII	GGCC	2 cut(s)	106, 216
HapII	CCGG	1 cut(s)	145
HhaI	GCGC	1 cut(s)	331
Hin1II	CATG	3 cut(s)	172, 303, 466
Hin6I	GCGC	1 cut(s)	329
HinP1I	GCGC	1 cut(s)	329
HinfI	GANTC	2 cut(s)	9, 29
HpaII	CCGG	1 cut(s)	145
HphI	GGTGA	2 cut(s)	27, 100
Hpy166II	GTNNAC	2 cut(s)	121, 503
Hpy188I	TCNGA	4 cut(s)	17, 246, 260, 411
Hpy188III	TCNNGA	3 cut(s)	81, 145, 155
Hpy8I	GTNNAC	2 cut(s)	121, 503
Hpy99I	CGWCG	6 cut(s)	46, 52, 58, 64, 131, 206
HpyAV	CCTTC	4 cut(s)	87, 255, 383, 491
HpyCH4III	ACNGT	1 cut(s)	378
HpyCH4IV	ACGT	1 cut(s)	419
HpyCH4V	TGCA	2 cut(s)	175, 347
HpyF10VI	GCNNNNNNNGC	2 cut(s)	112, 222
HpyF3I	CTNAG	1 cut(s)	442
HpySE526I	ACGT	1 cut(s)	419
Hsp92II	CATG	3 cut(s)	172, 303, 466
HspAI	GCGC	1 cut(s)	329
KflI	GGGWCCC	1 cut(s)	95
Kpn2I	TCCGGA	1 cut(s)	144
Ksp22I	TGATCA	1 cut(s)	406
Kzo9I	GATC	5 cut(s)	83, 151, 406, 508, 512
LpnPI	CCDG	6 cut(s)	140, 158, 212, 239, 263, 491
Lsp1109I	GCAGC	2 cut(s)	159, 187
LweI	GCATC	2 cut(s)	293, 388
MaeI	CTAG	1 cut(s)	459
MaeII	ACGT	1 cut(s)	419
MaeIII	GTNAC	2 cut(s)	88, 522
MalI	GATC	5 cut(s)	85, 153, 408, 510, 514
MboI	GATC	5 cut(s)	83, 151, 406, 508, 512
MboII	GAAGA	2 cut(s)	4, 24
MhlI	GDGCHC	1 cut(s)	223
MmeI	TCCRAC	1 cut(s)	360
MnlI	CCTC	4 cut(s)	11, 82, 96, 151
MroI	TCCGGA	1 cut(s)	144
MseI	TTAA	2 cut(s)	183, 336
MslI	CAYNNNNRTG	1 cut(s)	529
MspI	CCGG	1 cut(s)	145
MspR9I	CCNGG	1 cut(s)	227
MvaI	CCWGG	1 cut(s)	227
MvnI	CGCG	2 cut(s)	82, 206
MwoI	GCNNNNNNNGC	2 cut(s)	112, 222
NdeII	GATC	5 cut(s)	83, 151, 406, 508, 512
NlaIII	CATG	3 cut(s)	172, 303, 466
NlaIV	GGNNCC	3 cut(s)	96, 97, 189
NmuCI	GTSAC	2 cut(s)	88, 522
NruI	TCGCGA	1 cut(s)	82
NspI	RCATGY	1 cut(s)	466
PcsI	WCGNNNNNNNCGW	4 cut(s)	50, 56, 98, 123
PfeI	GAWTC	2 cut(s)	9, 29
PkrI	GCNGC	3 cut(s)	174, 177, 215
Ple19I	CGATCG	2 cut(s)	86, 515
PpuMI	RGGWCCY	1 cut(s)	95
Psp5II	RGGWCCY	1 cut(s)	95
Psp6I	CCWGG	1 cut(s)	225
PspGI	CCWGG	1 cut(s)	225
PspN4I	GGNNCC	3 cut(s)	96, 97, 189
PspPI	GGNCC	1 cut(s)	95
PspPPI	RGGWCCY	1 cut(s)	95
PstI	CTGCAG	1 cut(s)	177
PvuI	CGATCG	2 cut(s)	86, 515
RruI	TCGCGA	1 cut(s)	82
RsaI	GTAC	2 cut(s)	304, 422
RsaNI	GTAC	2 cut(s)	303, 421
RseI	CAYNNNNRTG	1 cut(s)	529
SaqAI	TTAA	2 cut(s)	183, 336
SatI	GCNGC	3 cut(s)	173, 176, 214
Sau3AI	GATC	5 cut(s)	83, 151, 406, 508, 512
Sau96I	GGNCC	1 cut(s)	95
ScrFI	CCNGG	1 cut(s)	227
SduI	GDGCHC	1 cut(s)	223
SetI	ASST	5 cut(s)	180, 239, 255, 422, 502
SfaNI	GCATC	2 cut(s)	293, 388
SfcI	CTRYAG	1 cut(s)	173
SinI	GGWCC	1 cut(s)	95
SmiMI	CAYNNNNRTG	1 cut(s)	529
SsiI	CCGC	6 cut(s)	38, 161, 206, 213, 223, 446
SspMI	CTAG	1 cut(s)	459
StyD4I	CCNGG	1 cut(s)	225
TaaI	ACNGT	1 cut(s)	378
TaiI	ACGT	1 cut(s)	422
TaqI	TCGA	1 cut(s)	511
TauI	GCSGC	1 cut(s)	216
TfiI	GAWTC	2 cut(s)	9, 29
Tru1I	TTAA	2 cut(s)	183, 336
Tru9I	TTAA	2 cut(s)	183, 336
TseFI	GTSAC	2 cut(s)	88, 522
TseI	GCWGC	2 cut(s)	172, 175
Tsp45I	GTSAC	2 cut(s)	88, 522
TspDTI	ATGAA	1 cut(s)	510
TspGWI	ACGGA	1 cut(s)	428
VpaK11BI	GGWCC	1 cut(s)	95
XceI	RCATGY	1 cut(s)	466
XmiI	GTMKAC	1 cut(s)	120
XspI	CTAG	1 cut(s)	459

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.