Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr5

Orthogroup ID

OG0029217

Physical Location & Seq

Genomic Coordinates Forward (+)

30989457 .. 30990697

Gene Structure 1241 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 702 bp

ATGTTTCAGCCAAGCATGTTCGACAATCACCACATCCTAGATCACATGACGACGAGCAGTACCCACAAAACCTCGGATAGTACTGGCCGACTGCTGGAGGATGACTTCGAGACCAAATCCGGAACCGAAACGACTATGGACATTCCTTCTGGTGACGAGCAAGATCCCAACACCACGGGCCCGCGCCCCAAAAGAAAACGTTACCATCGCCACACCCAGCGCCAAATCCAGGAGATGGAAGCATTCTTCAAGGACTGTCCTCACCCAGATGACAAGCAAAGGAAGGAGCTGAGTCGTGAACTAGGGTTAGAGCCTTTGCAAGTCAAATTCTGGTTCCAAAACAAGCGCACCCAAATGAAGGCACAACATGAACGCCATGACAATTCAATTTTGAAATCTGAGAACGACAAGCTTCATGCTGAGAACAATAGGTACAAGGAAGCCCTTGGCAATGCCACATGCCCCAACTGTGGAGGACCAGCTGCAATTGGTGAGATGTCATTTGATGAGCAACATTTGCGGATTGAAAATGCTCGTTTACGTGAAGAGATTGATAGGATATCTTCGATTGCTGCTAAATATGTTGGGAAACCTTTGACAAGCTCATTTTCCTCTCACGTGCCTTCGCGCTCCCTTGATGTTGCGGTTGGGAATTTTGGTACTCAGCCAGGCTTCGTAGGAGAAATGTATGGATCGATCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0003006 GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0007275 GO:0008150 GO:0008544 GO:0009790 GO:0009791 GO:0009793 GO:0009845 GO:0009888 GO:0009889 GO:0009913 GO:0009987 GO:0010154 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0022414 GO:0030154 GO:0030855 GO:0031323 GO:0031326 GO:0032501 GO:0032502 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043565 GO:0044424 GO:0044464 GO:0048316 GO:0048366 GO:0048367 GO:0048608 GO:0048731 GO:0048825 GO:0048827 GO:0048856 GO:0048869 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0060255 GO:0060429 GO:0061458 GO:0065007 GO:0080090 GO:0090351 GO:0090627 GO:0097159 GO:0099402 GO:0140110 GO:1901363 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Homeobox START

Protein Analysis

234

Amino Acids

26.56

Weight (kDa)

6.31

Isoelectric Point (pI)

45.69

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Homeodomain	PF00046	65 - 120	1.1e-18	Homeodomain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0029217)

Species	Orthologous Gene IDs
pyrus_communis	pycom02g13600 pycom05g31140

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	235
AccII	CGCG	2 cut(s)	184, 628
AccIII	TCCGGA	1 cut(s)	119
AciI	CCGC	3 cut(s)	182, 520, 644
AclI	AACGTT	1 cut(s)	199
AclWI	GGATC	2 cut(s)	158, 700
AcoI	YGGCCR	1 cut(s)	85
AcsI	RAATTY	2 cut(s)	326, 652
AcvI	CACGTG	1 cut(s)	619
AfaI	GTAC	4 cut(s)	61, 82, 434, 661
AfiI	CCNNNNNNNGG	5 cut(s)	94, 229, 235, 358, 470
AgsI	TTSAA	4 cut(s)	250, 387, 394, 527
AjnI	CCWGG	2 cut(s)	228, 667
AluBI	AGCT	4 cut(s)	289, 412, 482, 603
AluI	AGCT	4 cut(s)	289, 412, 482, 603
Alw26I	GTCTC	1 cut(s)	104
AlwI	GGATC	2 cut(s)	158, 700
Aor13HI	TCCGGA	1 cut(s)	119
AoxI	GGCC	2 cut(s)	85, 178
ApaI	GGGCCC	1 cut(s)	182
ApeKI	GCWGC	2 cut(s)	482, 572
ApoI	RAATTY	2 cut(s)	326, 652
AspLEI	GCGC	4 cut(s)	186, 222, 348, 630
AspS9I	GGNCC	3 cut(s)	178, 179, 476
AsuHPI	GGTGA	4 cut(s)	20, 164, 254, 503
AvaII	GGWCC	1 cut(s)	476
BaeGI	GKGCMC	1 cut(s)	182
BanII	GRGCYC	1 cut(s)	182
BbrPI	CACGTG	1 cut(s)	619
BbvI	GCAGC	2 cut(s)	469, 559
BccI	CCATC	2 cut(s)	213, 229
BciT130I	CCWGG	2 cut(s)	230, 669
BcoDI	GTCTC	1 cut(s)	104
BfaI	CTAG	3 cut(s)	38, 302, 700
BfoI	RGCGCY	1 cut(s)	223
BisI	GCNGC	2 cut(s)	483, 573
BlsI	GCNGC	2 cut(s)	484, 574
BmcAI	AGTACT	1 cut(s)	82
Bme1390I	CCNGG	2 cut(s)	230, 669
Bme18I	GGWCC	1 cut(s)	476
BmgT120I	GGNCC	3 cut(s)	178, 179, 476
BmiI	GGNNCC	3 cut(s)	124, 180, 335
BmrFI	CCNGG	2 cut(s)	230, 669
BpmI	CTGGAG	1 cut(s)	116
Bsa29I	ATCGAT	1 cut(s)	695
BsaAI	YACGTR	2 cut(s)	542, 619
BsaI	GGTCTC	1 cut(s)	104
BsaJI	CCNNGG	3 cut(s)	72, 174, 445
BsaWI	WCCGGW	1 cut(s)	119
Bsc4I	CCNNNNNNNGG	5 cut(s)	94, 229, 235, 358, 470
Bse1I	ACTGG	1 cut(s)	88
Bse3DI	GCAATG	1 cut(s)	457
BseAI	TCCGGA	1 cut(s)	119
BseBI	CCWGG	2 cut(s)	230, 669
BseCI	ATCGAT	1 cut(s)	695
BseDI	CCNNGG	3 cut(s)	72, 174, 445
BseGI	GGATG	2 cut(s)	33, 106
BseLI	CCNNNNNNNGG	5 cut(s)	94, 229, 235, 358, 470
BseMI	GCAATG	1 cut(s)	457
BseMII	CTCAG	4 cut(s)	281, 390, 411, 677
BseNI	ACTGG	1 cut(s)	88
BseSI	GKGCMC	1 cut(s)	182
BseXI	GCAGC	2 cut(s)	469, 559
BseYI	CCCAGC	1 cut(s)	216
Bsh1236I	CGCG	2 cut(s)	184, 628
BshFI	GGCC	2 cut(s)	87, 180
BshVI	ATCGAT	1 cut(s)	695
BsiSI	CCGG	1 cut(s)	120
BslI	CCNNNNNNNGG	5 cut(s)	94, 229, 235, 358, 470
BsmAI	GTCTC	1 cut(s)	104
BsmI	GAATGC	1 cut(s)	242
BsnI	GGCC	2 cut(s)	87, 180
Bso31I	GGTCTC	1 cut(s)	104
Bsp120I	GGGCCC	1 cut(s)	178
Bsp1286I	GDGCHC	1 cut(s)	182
Bsp13I	TCCGGA	1 cut(s)	119
Bsp143I	GATC	4 cut(s)	40, 163, 692, 696
BspACI	CCGC	3 cut(s)	182, 520, 644
BspANI	GGCC	2 cut(s)	87, 180
BspCNI	CTCAG	4 cut(s)	282, 391, 412, 676
BspDI	ATCGAT	1 cut(s)	695
BspEI	TCCGGA	1 cut(s)	119
BspFNI	CGCG	2 cut(s)	184, 628
BspLI	GGNNCC	3 cut(s)	124, 180, 335
BspPI	GGATC	2 cut(s)	158, 700
BspTNI	GGTCTC	1 cut(s)	104
BsrDI	GCAATG	1 cut(s)	457
BsrI	ACTGG	1 cut(s)	88
BssECI	CCNNGG	3 cut(s)	72, 174, 445
BssMI	GATC	4 cut(s)	40, 163, 692, 696
BssT1I	CCWWGG	1 cut(s)	445
Bst2UI	CCWGG	2 cut(s)	230, 669
Bst4CI	ACNGT	2 cut(s)	257, 470
Bst6I	CTCTTC	1 cut(s)	540
BstAPI	GCANNNNNTGC	1 cut(s)	517
BstBAI	YACGTR	2 cut(s)	542, 619
BstC8I	GCNNGC	1 cut(s)	182
BstDEI	CTNAG	4 cut(s)	290, 399, 420, 663
BstDSI	CCRYGG	1 cut(s)	174
BstF5I	GGATG	2 cut(s)	33, 106
BstFNI	CGCG	2 cut(s)	184, 628
BstH2I	RGCGCY	1 cut(s)	223
BstHHI	GCGC	4 cut(s)	186, 222, 348, 630
BstKTI	GATC	4 cut(s)	43, 166, 695, 699
BstMAI	GTCTC	1 cut(s)	104
BstMBI	GATC	4 cut(s)	40, 163, 692, 696
BstMWI	GCNNNNNNNGC	1 cut(s)	517
BstNI	CCWGG	2 cut(s)	230, 669
BstNSI	RCATGY	2 cut(s)	19, 462
BstSCI	CCNGG	2 cut(s)	228, 667
BstSLI	GKGCMC	1 cut(s)	182
BstUI	CGCG	2 cut(s)	184, 628
BstV1I	GCAGC	2 cut(s)	469, 559
BstX2I	RGATCY	1 cut(s)	163
BstYI	RGATCY	1 cut(s)	163
Bsu15I	ATCGAT	1 cut(s)	695
BsuRI	GGCC	2 cut(s)	87, 180
BsuTUI	ATCGAT	1 cut(s)	695
BtgI	CCRYGG	1 cut(s)	174
BtgZI	GCGATG	1 cut(s)	191
BtsCI	GGATG	2 cut(s)	33, 106
Cac8I	GCNNGC	1 cut(s)	182
CfoI	GCGC	4 cut(s)	186, 222, 348, 630
Cfr13I	GGNCC	3 cut(s)	178, 179, 476
ClaI	ATCGAT	1 cut(s)	695
Csp6I	GTAC	4 cut(s)	60, 81, 433, 660
CviAII	CATG	6 cut(s)	16, 46, 368, 377, 416, 459
CviQI	GTAC	4 cut(s)	60, 81, 433, 660
DdeI	CTNAG	4 cut(s)	290, 399, 420, 663
DpnI	GATC	4 cut(s)	42, 165, 694, 698
DpnII	GATC	4 cut(s)	40, 163, 692, 696
EaeI	YGGCCR	1 cut(s)	85
Eam1104I	CTCTTC	1 cut(s)	540
EarI	CTCTTC	1 cut(s)	540
Eco130I	CCWWGG	1 cut(s)	445
Eco24I	GRGCYC	1 cut(s)	182
Eco31I	GGTCTC	1 cut(s)	104
Eco32I	GATATC	1 cut(s)	561
Eco47I	GGWCC	1 cut(s)	476
Eco72I	CACGTG	1 cut(s)	619
EcoRII	CCWGG	2 cut(s)	228, 667
EcoRV	GATATC	1 cut(s)	561
EcoT14I	CCWWGG	1 cut(s)	445
EcoT38I	GRGCYC	1 cut(s)	182
ErhI	CCWWGG	1 cut(s)	445
FaeI	CATG	6 cut(s)	19, 49, 371, 380, 419, 462
FaiI	YATR	9 cut(s)	17, 47, 137, 369, 378, 417, 460, 582, 690
FatI	CATG	6 cut(s)	15, 45, 367, 376, 415, 458
FauI	CCCGC	1 cut(s)	189
Fnu4HI	GCNGC	2 cut(s)	483, 573
FokI	GGATG	2 cut(s)	20, 113
FriOI	GRGCYC	1 cut(s)	182
Fsp4HI	GCNGC	2 cut(s)	483, 573
FspBI	CTAG	3 cut(s)	38, 302, 700
GlaI	GCGC	4 cut(s)	185, 221, 347, 629
GluI	GCNGC	2 cut(s)	483, 573
GsaI	CCCAGC	1 cut(s)	220
GsuI	CTGGAG	1 cut(s)	116
HaeII	RGCGCY	1 cut(s)	223
HaeIII	GGCC	2 cut(s)	87, 180
HapII	CCGG	1 cut(s)	120
HhaI	GCGC	4 cut(s)	186, 222, 348, 630
Hin1II	CATG	6 cut(s)	19, 49, 371, 380, 419, 462
Hin6I	GCGC	4 cut(s)	184, 220, 346, 628
HinP1I	GCGC	4 cut(s)	184, 220, 346, 628
HindIII	AAGCTT	1 cut(s)	410
HinfI	GANTC	1 cut(s)	292
HpaII	CCGG	1 cut(s)	120
HphI	GGTGA	4 cut(s)	20, 164, 254, 503
Hpy166II	GTNNAC	2 cut(s)	299, 539
Hpy188I	TCNGA	2 cut(s)	76, 400
Hpy188III	TCNNGA	3 cut(s)	109, 120, 296
Hpy8I	GTNNAC	2 cut(s)	299, 539
Hpy99I	CGWCG	1 cut(s)	55
HpyAV	CCTTC	4 cut(s)	156, 277, 352, 633
HpyCH4III	ACNGT	2 cut(s)	257, 470
HpyCH4IV	ACGT	3 cut(s)	199, 541, 618
HpyCH4V	TGCA	2 cut(s)	319, 485
HpyF10VI	GCNNNNNNNGC	1 cut(s)	517
HpyF3I	CTNAG	4 cut(s)	290, 399, 420, 663
HpySE526I	ACGT	3 cut(s)	199, 541, 618
Hsp92II	CATG	6 cut(s)	19, 49, 371, 380, 419, 462
HspAI	GCGC	4 cut(s)	184, 220, 346, 628
Kpn2I	TCCGGA	1 cut(s)	119
Kzo9I	GATC	4 cut(s)	40, 163, 692, 696
LmnI	GCTCC	2 cut(s)	286, 635
Lsp1109I	GCAGC	2 cut(s)	469, 559
MaeI	CTAG	3 cut(s)	38, 302, 700
MaeII	ACGT	3 cut(s)	199, 541, 618
MaeIII	GTNAC	2 cut(s)	152, 200
MalI	GATC	4 cut(s)	42, 165, 694, 698
MboI	GATC	4 cut(s)	40, 163, 692, 696
MboII	GAAGA	3 cut(s)	238, 555, 557
MfeI	CAATTG	1 cut(s)	486
MflI	RGATCY	1 cut(s)	163
MhlI	GDGCHC	1 cut(s)	182
MluCI	AATT	5 cut(s)	326, 382, 387, 486, 652
MlyI	GAGTC	1 cut(s)	301
MnlI	CCTC	5 cut(s)	82, 91, 270, 467, 622
MroI	TCCGGA	1 cut(s)	119
MslI	CAYNNNNRTG	2 cut(s)	267, 353
MspA1I	CMGCKG	1 cut(s)	482
MspI	CCGG	1 cut(s)	120
MspR9I	CCNGG	2 cut(s)	230, 669
MunI	CAATTG	1 cut(s)	486
Mva1269I	GAATGC	1 cut(s)	242
MvaI	CCWGG	2 cut(s)	230, 669
MvnI	CGCG	2 cut(s)	184, 628
MwoI	GCNNNNNNNGC	1 cut(s)	517
NdeII	GATC	4 cut(s)	40, 163, 692, 696
NlaIII	CATG	6 cut(s)	19, 49, 371, 380, 419, 462
NlaIV	GGNNCC	3 cut(s)	124, 180, 335
NmuCI	GTSAC	1 cut(s)	152
NspI	RCATGY	2 cut(s)	19, 462
PctI	GAATGC	1 cut(s)	242
PflMI	CCANNNNNTGG	1 cut(s)	235
PfoI	TCCNGGA	1 cut(s)	228
PkrI	GCNGC	2 cut(s)	484, 574
PleI	GAGTC	1 cut(s)	300
PmaCI	CACGTG	1 cut(s)	619
PmlI	CACGTG	1 cut(s)	619
PpsI	GAGTC	1 cut(s)	300
Ppu21I	YACGTR	2 cut(s)	542, 619
Psp1406I	AACGTT	1 cut(s)	199
Psp6I	CCWGG	2 cut(s)	228, 667
PspCI	CACGTG	1 cut(s)	619
PspFI	CCCAGC	1 cut(s)	216
PspGI	CCWGG	2 cut(s)	228, 667
PspN4I	GGNNCC	3 cut(s)	124, 180, 335
PspOMI	GGGCCC	1 cut(s)	178
PspPI	GGNCC	3 cut(s)	178, 179, 476
PsrI	GAACNNNNNNTAC	2 cut(s)	416, 448
PsuI	RGATCY	1 cut(s)	163
PvuII	CAGCTG	1 cut(s)	482
RsaI	GTAC	4 cut(s)	61, 82, 434, 661
RsaNI	GTAC	4 cut(s)	60, 81, 433, 660
RseI	CAYNNNNRTG	2 cut(s)	267, 353
SatI	GCNGC	2 cut(s)	483, 573
Sau3AI	GATC	4 cut(s)	40, 163, 692, 696
Sau96I	GGNCC	3 cut(s)	178, 179, 476
ScaI	AGTACT	1 cut(s)	82
SchI	GAGTC	1 cut(s)	301
ScrFI	CCNGG	2 cut(s)	230, 669
SduI	GDGCHC	1 cut(s)	182
SinI	GGWCC	1 cut(s)	476
SmiMI	CAYNNNNRTG	2 cut(s)	267, 353
Sse9I	AATT	5 cut(s)	326, 382, 387, 486, 652
SsiI	CCGC	3 cut(s)	182, 520, 644
SspMI	CTAG	3 cut(s)	38, 302, 700
StyD4I	CCNGG	2 cut(s)	228, 667
StyI	CCWWGG	1 cut(s)	445
TaaI	ACNGT	2 cut(s)	257, 470
TaiI	ACGT	3 cut(s)	202, 544, 621
TaqI	TCGA	4 cut(s)	21, 108, 566, 695
TasI	AATT	5 cut(s)	326, 382, 387, 486, 652
TatI	WGTACW	1 cut(s)	80
TseFI	GTSAC	1 cut(s)	152
TseI	GCWGC	2 cut(s)	482, 572
Tsp45I	GTSAC	1 cut(s)	152
TspDTI	ATGAA	3 cut(s)	371, 384, 404
Van91I	CCANNNNNTGG	1 cut(s)	235
VpaK11BI	GGWCC	1 cut(s)	476
XapI	RAATTY	2 cut(s)	326, 652
XceI	RCATGY	2 cut(s)	19, 462
XspI	CTAG	3 cut(s)	38, 302, 700
ZrmI	AGTACT	1 cut(s)	82

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.