Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr5

Orthogroup ID

OG0028828

Physical Location & Seq

Genomic Coordinates Reverse (-)

31398754 .. 31399299

Gene Structure 546 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 441 bp

ATGACACATTACTGTATAATTTTTATTTTTCAGTGGCAAAAACATCCAAGATTGGTTATTGAAGCATTTGTTTTGTTGCTCTCGCCATATGTACCTCATATGGCTGAGGAGCTTTGGTTTCGCTTGGGACACTCCGAATCTTTGGCATATGAGCCTTTTCCGAAGGCGGATCCTGCTTACTTGAAGGAATCTACTATTGTCCGCCCAGTTCAGATCAACGGCAAGATGAGGGGTACGATCCTGGTTGAACAGATCTGTTCGGAGGAGGATGCCCTCCAGCTTGCATCACAAGATGAAAAACTCTCCAAATACCTGGAGGGGAAGTCAATTAAAAAGAGAATTTTTGTTCCTAGCAAGATCTTGAATGTTATTCTGGACCGTGGAAACGTCAAGGCGGCTGGCCGAGGATCCCTTCAATCCCATGCCGGCATTGGTGATTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0003006 GO:0003674 GO:0003824 GO:0004812 GO:0004823 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0006082 GO:0006139 GO:0006399 GO:0006412 GO:0006418 GO:0006429 GO:0006518 GO:0006520 GO:0006725 GO:0006807 GO:0007275 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009507 GO:0009532 GO:0009536 GO:0009570 GO:0009790 GO:0009791 GO:0009793 GO:0009987 GO:0010154 GO:0010467 GO:0016070 GO:0016874 GO:0016875 GO:0019538 GO:0019752 GO:0022414 GO:0032501 GO:0032502 GO:0032543 GO:0034641 GO:0034645 GO:0034660 GO:0043038 GO:0043039 GO:0043043 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043436 GO:0043603 GO:0043604 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044267 GO:0044271 GO:0044281 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0046483 GO:0048316 GO:0048608 GO:0048731 GO:0048856 GO:0061458 GO:0071704 GO:0090304 GO:0140053 GO:0140098 GO:0140101 GO:1901360 GO:1901564 GO:1901566 GO:1901576

KEGG Pathways

Metabolic & Signaling

ko00970 map00970

Pfam Domains

Protein Families

Anticodon_1 tRNA-synt_1 tRNA-synt_1_2

Protein Analysis

147

Amino Acids

16.55

Weight (kDa)

8.54

Isoelectric Point (pI)

52.39

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Anticodon_1	PF08264	19 - 84	1.6e-12	Anticodon-binding domain of tRNA ligase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Tree File

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Orthologous Genes (Group: OG0028828)

Species	Orthologous Gene IDs
malus_domestica	MD05G1351000.v1.1
pyrus_communis	pycom05g31830

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	3 cut(s)	167, 202, 395
AclWI	GGATC	5 cut(s)	164, 177, 232, 402, 415
AcoI	YGGCCR	1 cut(s)	400
AcsI	RAATTY	1 cut(s)	339
AfaI	GTAC	2 cut(s)	93, 235
AgsI	TTSAA	5 cut(s)	62, 184, 248, 364, 416
AjnI	CCWGG	2 cut(s)	240, 312
AluBI	AGCT	2 cut(s)	112, 280
AluI	AGCT	2 cut(s)	112, 280
AlwI	GGATC	5 cut(s)	164, 177, 232, 402, 415
AoxI	GGCC	1 cut(s)	400
ApoI	RAATTY	1 cut(s)	339
AspS9I	GGNCC	1 cut(s)	376
AvaII	GGWCC	1 cut(s)	376
BamHI	GGATCC	2 cut(s)	169, 407
BbvCI	CCTCAGC	1 cut(s)	105
BceAI	ACGGC	1 cut(s)	235
BciT130I	CCWGG	2 cut(s)	242, 314
BfaI	CTAG	1 cut(s)	351
BglII	AGATCT	2 cut(s)	252, 357
BisI	GCNGC	1 cut(s)	396
BlsI	GCNGC	1 cut(s)	397
Bme1390I	CCNGG	2 cut(s)	242, 314
Bme18I	GGWCC	1 cut(s)	376
BmgT120I	GGNCC	1 cut(s)	376
BmiI	GGNNCC	2 cut(s)	171, 409
BmrFI	CCNGG	2 cut(s)	242, 314
BmrI	ACTGGG	1 cut(s)	200
BmsI	GCATC	2 cut(s)	259, 293
BmuI	ACTGGG	1 cut(s)	200
BpmI	CTGGAG	2 cut(s)	260, 335
Bpu10I	CCTNAGC	1 cut(s)	105
BsaJI	CCNNGG	2 cut(s)	379, 403
BsaXI	ACNNNNNCTCC	4 cut(s)	101, 131, 308, 338
Bse118I	RCCGGY	1 cut(s)	425
Bse1I	ACTGG	1 cut(s)	206
BseBI	CCWGG	2 cut(s)	242, 314
BseDI	CCNNGG	2 cut(s)	379, 403
BseGI	GGATG	2 cut(s)	43, 274
BseMII	CTCAG	1 cut(s)	96
BseNI	ACTGG	1 cut(s)	206
BseRI	GAGGAG	2 cut(s)	122, 278
BshFI	GGCC	1 cut(s)	402
BsiSI	CCGG	1 cut(s)	426
BslFI	GGGAC	1 cut(s)	141
BsmFI	GGGAC	1 cut(s)	141
BsnI	GGCC	1 cut(s)	402
Bsp143I	GATC	6 cut(s)	169, 213, 237, 252, 357, 407
BspACI	CCGC	3 cut(s)	167, 202, 395
BspANI	GGCC	1 cut(s)	402
BspCNI	CTCAG	1 cut(s)	97
BspLI	GGNNCC	2 cut(s)	171, 409
BspPI	GGATC	5 cut(s)	164, 177, 232, 402, 415
BsrFI	RCCGGY	1 cut(s)	425
BsrI	ACTGG	1 cut(s)	206
BssAI	RCCGGY	1 cut(s)	425
BssECI	CCNNGG	2 cut(s)	379, 403
BssMI	GATC	6 cut(s)	169, 213, 237, 252, 357, 407
Bst2UI	CCWGG	2 cut(s)	242, 314
Bst4CI	ACNGT	2 cut(s)	14, 380
BstC8I	GCNNGC	3 cut(s)	282, 400, 427
BstDEI	CTNAG	1 cut(s)	105
BstDSI	CCRYGG	1 cut(s)	379
BstF5I	GGATG	2 cut(s)	43, 274
BstKTI	GATC	6 cut(s)	172, 216, 240, 255, 360, 410
BstMBI	GATC	6 cut(s)	169, 213, 237, 252, 357, 407
BstMWI	GCNNNNNNNGC	1 cut(s)	173
BstNI	CCWGG	2 cut(s)	242, 314
BstSCI	CCNGG	2 cut(s)	240, 312
BstX2I	RGATCY	4 cut(s)	169, 252, 357, 407
BstXI	CCANNNNNNTGG	1 cut(s)	313
BstYI	RGATCY	4 cut(s)	169, 252, 357, 407
BsuRI	GGCC	1 cut(s)	402
BtgI	CCRYGG	1 cut(s)	379
BtsCI	GGATG	2 cut(s)	43, 274
BtsIMutI	CAGTG	1 cut(s)	38
Cac8I	GCNNGC	3 cut(s)	282, 400, 427
Cfr10I	RCCGGY	1 cut(s)	425
Cfr13I	GGNCC	1 cut(s)	376
Csp6I	GTAC	2 cut(s)	92, 234
CviAII	CATG	1 cut(s)	422
CviJI	RGCY	6 cut(s)	104, 112, 154, 280, 398, 402
CviKI_1	RGCY	6 cut(s)	104, 112, 154, 280, 398, 402
CviQI	GTAC	2 cut(s)	92, 234
DdeI	CTNAG	1 cut(s)	105
DpnI	GATC	6 cut(s)	171, 215, 239, 254, 359, 409
DpnII	GATC	6 cut(s)	169, 213, 237, 252, 357, 407
EaeI	YGGCCR	1 cut(s)	400
EciI	GGCGGA	2 cut(s)	182, 191
Eco47I	GGWCC	1 cut(s)	376
EcoRII	CCWGG	2 cut(s)	240, 312
FaeI	CATG	1 cut(s)	425
FaiI	YATR	8 cut(s)	17, 88, 90, 99, 101, 148, 150, 423
FaqI	GGGAC	1 cut(s)	141
FatI	CATG	1 cut(s)	421
FauNDI	CATATG	3 cut(s)	88, 99, 148
Fnu4HI	GCNGC	1 cut(s)	396
FokI	GGATG	2 cut(s)	30, 281
Fsp4HI	GCNGC	1 cut(s)	396
FspBI	CTAG	1 cut(s)	351
GluI	GCNGC	1 cut(s)	396
GsuI	CTGGAG	2 cut(s)	260, 335
HaeIII	GGCC	1 cut(s)	402
HapII	CCGG	1 cut(s)	426
Hin1II	CATG	1 cut(s)	425
HinfI	GANTC	2 cut(s)	137, 188
HpaII	CCGG	1 cut(s)	426
Hpy188I	TCNGA	4 cut(s)	136, 162, 213, 262
Hpy188III	TCNNGA	2 cut(s)	361, 374
HpyAV	CCTTC	3 cut(s)	157, 178, 422
HpyCH4III	ACNGT	2 cut(s)	14, 380
HpyCH4IV	ACGT	1 cut(s)	387
HpyCH4V	TGCA	1 cut(s)	284
HpyF10VI	GCNNNNNNNGC	1 cut(s)	173
HpyF3I	CTNAG	1 cut(s)	105
HpySE526I	ACGT	1 cut(s)	387
Hsp92II	CATG	1 cut(s)	425
KroI	GCCGGC	1 cut(s)	425
KroNI	GCCGGC	1 cut(s)	427
Kzo9I	GATC	6 cut(s)	169, 213, 237, 252, 357, 407
LmnI	GCTCC	1 cut(s)	109
LpnPI	CCDG	9 cut(s)	186, 219, 227, 254, 290, 299, 326, 359, 384
LweI	GCATC	2 cut(s)	259, 293
MaeI	CTAG	1 cut(s)	351
MaeII	ACGT	1 cut(s)	387
MalI	GATC	6 cut(s)	171, 215, 239, 254, 359, 409
MboI	GATC	6 cut(s)	169, 213, 237, 252, 357, 407
MflI	RGATCY	4 cut(s)	169, 252, 357, 407
MluCI	AATT	3 cut(s)	18, 327, 339
MnlI	CCTC	8 cut(s)	100, 105, 222, 256, 259, 284, 310, 398
MroNI	GCCGGC	1 cut(s)	425
MseI	TTAA	1 cut(s)	330
MspI	CCGG	1 cut(s)	426
MspR9I	CCNGG	2 cut(s)	242, 314
MvaI	CCWGG	2 cut(s)	242, 314
MwoI	GCNNNNNNNGC	1 cut(s)	173
NaeI	GCCGGC	1 cut(s)	427
NdeI	CATATG	3 cut(s)	88, 99, 148
NdeII	GATC	6 cut(s)	169, 213, 237, 252, 357, 407
NgoMIV	GCCGGC	1 cut(s)	425
NlaIII	CATG	1 cut(s)	425
NlaIV	GGNNCC	2 cut(s)	171, 409
NmeAIII	GCCGAG	1 cut(s)	428
PdiI	GCCGGC	1 cut(s)	427
PfeI	GAWTC	2 cut(s)	137, 188
PkrI	GCNGC	1 cut(s)	397
Psp6I	CCWGG	2 cut(s)	240, 312
PspGI	CCWGG	2 cut(s)	240, 312
PspN4I	GGNNCC	2 cut(s)	171, 409
PspPI	GGNCC	1 cut(s)	376
PsuI	RGATCY	4 cut(s)	169, 252, 357, 407
RsaI	GTAC	2 cut(s)	93, 235
RsaNI	GTAC	2 cut(s)	92, 234
SaqAI	TTAA	1 cut(s)	330
SatI	GCNGC	1 cut(s)	396
Sau3AI	GATC	6 cut(s)	169, 213, 237, 252, 357, 407
Sau96I	GGNCC	1 cut(s)	376
ScrFI	CCNGG	2 cut(s)	242, 314
SetI	ASST	5 cut(s)	97, 114, 282, 315, 390
SfaNI	GCATC	2 cut(s)	259, 293
SinI	GGWCC	1 cut(s)	376
Sse9I	AATT	3 cut(s)	18, 327, 339
SsiI	CCGC	3 cut(s)	167, 202, 395
SspMI	CTAG	1 cut(s)	351
StyD4I	CCNGG	2 cut(s)	240, 312
TaaI	ACNGT	2 cut(s)	14, 380
TaiI	ACGT	1 cut(s)	390
TasI	AATT	3 cut(s)	18, 327, 339
TauI	GCSGC	1 cut(s)	398
TfiI	GAWTC	2 cut(s)	137, 188
Tru1I	TTAA	1 cut(s)	330
Tru9I	TTAA	1 cut(s)	330
TscAI	CASTG	1 cut(s)	38
TspDTI	ATGAA	1 cut(s)	309
TspRI	CASTG	1 cut(s)	38
VpaK11BI	GGWCC	1 cut(s)	376
XapI	RAATTY	1 cut(s)	339
XcmI	CCANNNNNNNNNTGG	1 cut(s)	428
XspI	CTAG	1 cut(s)	351

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.