Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr6

Orthogroup ID

OG0015634

Physical Location & Seq

Genomic Coordinates Forward (+)

1644022 .. 1645106

Gene Structure 1085 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 876 bp

ATGTATGGTGGAGGCGGAGATGAGGAAGCGAGCGTGGGACTTAGAGGCGGCGGCGGAGGAGGTGGAGGAGGAGGAGGGGGGATGATGAAGATGATGATTAGCAGTCCGACCGGGGCAGGGCAGTGGGCCCCGGACGAGACAAGGGAGCTGATCGCGATCCGTGGGGAGCTGGAGATTAGGGACTCCGTTGTATCGAAGCGCAGCAAGCCGCAGTGGGAGGCAGTGAGCTCTAAGATGACTGAGAGAGGCTTCAATCGAACCCCCGAGCAGTGCAAGTGCAAGTGGAAGAACCTCCTCATTCGCTACAAGGGGAAGGAGACGTCTGATCCAGAGAGTGGGCGGGAATGTCCTTTCTTTGAGGAGTTGCACGCAGTGTTTACTGAAAGAGCCAAGAATATGCAGAGATTGCTTCTTGAATCCGAGGCGGGTTCTGCCCGACCAAAGAAACTGGTTAAGAGGAAATCGAGGTCAGGGCAGTGGTCGGATGAGTTGTCAGAAGACGCAGAGGAGGAGGATAGCAATGGGAAAGGTAAGAAAAGGAAGGGGGAAGGAGTAGTATTGGCAAGAGCAATCAATGCTGCAAGTGGAAGTAGTACTAGCAGTGTGCAGGAATTACTTAAGGAGTTTTTTCAGCATCAGCAGAGGATGGAGATGGAGTGGAGGCAAATGATGGAGACGCGGGCGCTGGAGCGGCGGCTGTTTGAGGAGGAATGGCGGCAAAAGATGGAGAAGACGGAGAGGGAGAGGTTAATGGTTGAGCAGGCTTGGAGAGAGAGGGAAGAAGAGAGAAGGATTAGAGAAGAGAGCAGAGCTGAGAGGAGGGATGCCCTGTTGACCACTCTCTTGAACAGGCTGATCAATCAAAATAACTTCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000981 GO:0003674 GO:0003700 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005730 GO:0006355 GO:0006357 GO:0008150 GO:0009889 GO:0010468 GO:0010556 GO:0016592 GO:0019219 GO:0019222 GO:0031323 GO:0031326 GO:0031974 GO:0031981 GO:0032991 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044451 GO:0044464 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0060255 GO:0065007 GO:0070013 GO:0080090 GO:0140110 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Myb_DNA-bind_4

Protein Analysis

292

Amino Acids

33.3

Weight (kDa)

8.68

Isoelectric Point (pI)

57.65

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Myb_DNA-bind_4	PF13837	41 - 124	6.5e-23	Myb/SANT-like DNA-binding domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0015634)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_5g24280 FvH4_5g24280 FvH4_5g24280
malus_domestica	MD06G1021000.v1.1
prunus_persica	Prupe.5G017700_v2.0.a1
pyrus_communis	pycom06g01530
rosa_chinensis	RchiOBHm_Chr7g0214511
rosa_laevigata	RLG00000002743
rosa_multiflora	Rmu_sc0004199.1_g000042
rosa_roxburghii	Rroxscaffold_3G00245280
rosa_rugosa	Rorug07G0145800
rosa_samantha	Rh7AG281500 Rh7BG273100 Rh7CG300800 Rh7DG285600
rosa_wichuraiana	Rw7G024080

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	323
AccB7I	CCANNNNNTGG	1 cut(s)	335
AccBSI	CCGCTC	1 cut(s)	691
AccII	CGCG	2 cut(s)	155, 679
AclWI	GGATC	2 cut(s)	151, 320
AcyI	GRCGYC	1 cut(s)	320
AdeI	CACNNNGTG	1 cut(s)	373
AfaI	GTAC	1 cut(s)	595
AfiI	CCNNNNNNNGG	2 cut(s)	117, 335
AflII	CTTAAG	1 cut(s)	617
AgsI	TTSAA	3 cut(s)	253, 416, 847
AluBI	AGCT	4 cut(s)	148, 169, 228, 812
AluI	AGCT	4 cut(s)	148, 169, 228, 812
Alw21I	GWGCWC	1 cut(s)	230
Alw26I	GTCTC	3 cut(s)	131, 311, 668
AlwI	GGATC	2 cut(s)	151, 320
Ama87I	CYCGRG	1 cut(s)	263
AoxI	GGCC	1 cut(s)	126
ApaI	GGGCCC	1 cut(s)	130
ApeKI	GCWGC	2 cut(s)	201, 578
AspLEI	GCGC	2 cut(s)	201, 685
AspS9I	GGNCC	2 cut(s)	126, 127
AsuC2I	CCSGG	2 cut(s)	112, 131
AvaI	CYCGRG	1 cut(s)	263
BaeGI	GKGCMC	1 cut(s)	130
BanII	GRGCYC	2 cut(s)	130, 230
BbsI	GAAGAC	2 cut(s)	504, 737
Bbv12I	GWGCWC	1 cut(s)	230
BbvI	GCAGC	2 cut(s)	213, 565
BccI	CCATC	4 cut(s)	640, 646, 664, 718
BclI	TGATCA	1 cut(s)	855
BcnI	CCSGG	2 cut(s)	112, 131
BcoDI	GTCTC	3 cut(s)	131, 311, 668
BfaI	CTAG	1 cut(s)	597
BfoI	RGCGCY	1 cut(s)	686
BfrI	CTTAAG	1 cut(s)	617
BisI	GCNGC	8 cut(s)	49, 52, 202, 209, 579, 692, 695, 716
BlsI	GCNGC	8 cut(s)	50, 53, 203, 210, 580, 693, 696, 717
BmcAI	AGTACT	1 cut(s)	595
Bme1390I	CCNGG	2 cut(s)	112, 131
BmeT110I	CYCGRG	1 cut(s)	263
BmgT120I	GGNCC	2 cut(s)	126, 127
BmiI	GGNNCC	2 cut(s)	128, 129
BmrFI	CCNGG	2 cut(s)	112, 131
BmsI	GCATC	2 cut(s)	643, 814
BpiI	GAAGAC	2 cut(s)	504, 737
BpmI	CTGGAG	2 cut(s)	191, 707
BpuMI	CCSGG	2 cut(s)	112, 131
BsaBI	GATNNNNATC	1 cut(s)	155
BsaHI	GRCGYC	1 cut(s)	320
BsaJI	CCNNGG	4 cut(s)	111, 129, 160, 420
BsaXI	ACNNNNNCTCC	2 cut(s)	641, 671
Bsc4I	CCNNNNNNNGG	2 cut(s)	117, 335
Bse1I	ACTGG	1 cut(s)	453
Bse3DI	GCAATG	1 cut(s)	526
Bse8I	GATNNNNATC	1 cut(s)	155
BseDI	CCNNGG	4 cut(s)	111, 129, 160, 420
BseGI	GGATG	4 cut(s)	87, 490, 651, 829
BseJI	GATNNNNATC	1 cut(s)	155
BseLI	CCNNNNNNNGG	2 cut(s)	117, 335
BseMI	GCAATG	1 cut(s)	526
BseMII	CTCAG	2 cut(s)	231, 804
BseNI	ACTGG	1 cut(s)	453
BseSI	GKGCMC	1 cut(s)	130
BseXI	GCAGC	2 cut(s)	213, 565
BsgI	GTGCAG	1 cut(s)	626
Bsh1236I	CGCG	2 cut(s)	155, 679
Bsh1285I	CGRYCG	1 cut(s)	111
BshFI	GGCC	1 cut(s)	128
BsiEI	CGRYCG	1 cut(s)	111
BsiHKAI	GWGCWC	1 cut(s)	230
BsiHKCI	CYCGRG	1 cut(s)	263
BsiSI	CCGG	2 cut(s)	111, 131
BslFI	GGGAC	2 cut(s)	51, 194
BslI	CCNNNNNNNGG	2 cut(s)	117, 335
BsmAI	GTCTC	3 cut(s)	131, 311, 668
BsmBI	CGTCTC	2 cut(s)	311, 668
BsmFI	GGGAC	2 cut(s)	51, 194
BsnI	GGCC	1 cut(s)	128
BsoBI	CYCGRG	1 cut(s)	263
Bsp120I	GGGCCC	1 cut(s)	126
Bsp1286I	GDGCHC	2 cut(s)	130, 230
Bsp143I	GATC	4 cut(s)	150, 156, 325, 855
Bsp68I	TCGCGA	1 cut(s)	155
BspANI	GGCC	1 cut(s)	128
BspCNI	CTCAG	2 cut(s)	232, 805
BspFNI	CGCG	2 cut(s)	155, 679
BspLI	GGNNCC	2 cut(s)	128, 129
BspPI	GGATC	2 cut(s)	151, 320
BspTI	CTTAAG	1 cut(s)	617
BsrBI	CCGCTC	1 cut(s)	691
BsrDI	GCAATG	1 cut(s)	526
BsrI	ACTGG	1 cut(s)	453
BssECI	CCNNGG	4 cut(s)	111, 129, 160, 420
BssMI	GATC	4 cut(s)	150, 156, 325, 855
BssNI	GRCGYC	1 cut(s)	320
Bst6I	CTCTTC	2 cut(s)	777, 795
BstACI	GRCGYC	1 cut(s)	320
BstAFI	CTTAAG	1 cut(s)	617
BstAPI	GCANNNNNTGC	2 cut(s)	406, 575
BstC8I	GCNNGC	5 cut(s)	31, 206, 369, 681, 762
BstDEI	CTNAG	4 cut(s)	41, 231, 240, 813
BstDSI	CCRYGG	1 cut(s)	160
BstF5I	GGATG	4 cut(s)	87, 490, 651, 829
BstFNI	CGCG	2 cut(s)	155, 679
BstH2I	RGCGCY	1 cut(s)	686
BstHHI	GCGC	2 cut(s)	201, 685
BstKTI	GATC	4 cut(s)	153, 159, 328, 858
BstMAI	GTCTC	3 cut(s)	131, 311, 668
BstMBI	GATC	4 cut(s)	150, 156, 325, 855
BstMCI	CGRYCG	1 cut(s)	111
BstMWI	GCNNNNNNNGC	5 cut(s)	205, 406, 431, 575, 691
BstSCI	CCNGG	2 cut(s)	110, 129
BstSLI	GKGCMC	1 cut(s)	130
BstUI	CGCG	2 cut(s)	155, 679
BstV1I	GCAGC	2 cut(s)	213, 565
BstV2I	GAAGAC	2 cut(s)	504, 737
BsuRI	GGCC	1 cut(s)	128
BtgI	CCRYGG	1 cut(s)	160
BtsCI	GGATG	4 cut(s)	87, 490, 651, 829
BtsI	GCAGTG	7 cut(s)	128, 218, 228, 275, 378, 482, 607
BtsIMutI	CAGTG	7 cut(s)	128, 218, 228, 275, 378, 482, 607
BtuMI	TCGCGA	1 cut(s)	155
Cac8I	GCNNGC	5 cut(s)	31, 206, 369, 681, 762
CfoI	GCGC	2 cut(s)	201, 685
Cfr13I	GGNCC	2 cut(s)	126, 127
CseI	GACGC	2 cut(s)	509, 685
Csp6I	GTAC	1 cut(s)	594
CviQI	GTAC	1 cut(s)	594
DdeI	CTNAG	4 cut(s)	41, 231, 240, 813
DpnI	GATC	4 cut(s)	152, 158, 327, 857
DpnII	GATC	4 cut(s)	150, 156, 325, 855
DraIII	CACNNNGTG	1 cut(s)	373
Eam1104I	CTCTTC	2 cut(s)	777, 795
EarI	CTCTTC	2 cut(s)	777, 795
EciI	GGCGGA	2 cut(s)	30, 69
Ecl136II	GAGCTC	1 cut(s)	228
Eco24I	GRGCYC	2 cut(s)	130, 230
Eco53kI	GAGCTC	1 cut(s)	228
Eco88I	CYCGRG	1 cut(s)	263
EcoICRI	GAGCTC	1 cut(s)	228
EcoO109I	RGGNCCY	1 cut(s)	127
EcoT38I	GRGCYC	2 cut(s)	130, 230
Esp3I	CGTCTC	2 cut(s)	311, 668
FaiI	YATR	2 cut(s)	6, 398
FaqI	GGGAC	2 cut(s)	51, 194
FauI	CCCGC	3 cut(s)	333, 418, 672
FbaI	TGATCA	1 cut(s)	855
Fnu4HI	GCNGC	8 cut(s)	49, 52, 202, 209, 579, 692, 695, 716
FokI	GGATG	4 cut(s)	94, 497, 658, 836
FriOI	GRGCYC	2 cut(s)	130, 230
Fsp4HI	GCNGC	8 cut(s)	49, 52, 202, 209, 579, 692, 695, 716
FspBI	CTAG	1 cut(s)	597
GlaI	GCGC	2 cut(s)	200, 684
GluI	GCNGC	8 cut(s)	49, 52, 202, 209, 579, 692, 695, 716
GsuI	CTGGAG	2 cut(s)	191, 707
HaeII	RGCGCY	1 cut(s)	686
HaeIII	GGCC	1 cut(s)	128
HapII	CCGG	2 cut(s)	111, 131
HgaI	GACGC	2 cut(s)	509, 685
HhaI	GCGC	2 cut(s)	201, 685
Hin1I	GRCGYC	1 cut(s)	320
Hin6I	GCGC	2 cut(s)	199, 683
HinP1I	GCGC	2 cut(s)	199, 683
HincII	GTYRAC	1 cut(s)	834
HindII	GTYRAC	1 cut(s)	834
HinfI	GANTC	2 cut(s)	182, 416
HpaII	CCGG	2 cut(s)	111, 131
Hpy166II	GTNNAC	2 cut(s)	378, 834
Hpy188I	TCNGA	6 cut(s)	108, 325, 421, 484, 496, 875
Hpy188III	TCNNGA	4 cut(s)	154, 329, 413, 844
Hpy8I	GTNNAC	2 cut(s)	378, 834
HpyAV	CCTTC	4 cut(s)	307, 535, 542, 783
HpyCH4IV	ACGT	1 cut(s)	320
HpyCH4V	TGCA	6 cut(s)	273, 279, 367, 400, 581, 607
HpyF10VI	GCNNNNNNNGC	5 cut(s)	205, 406, 431, 575, 691
HpyF3I	CTNAG	4 cut(s)	41, 231, 240, 813
HpySE526I	ACGT	1 cut(s)	320
Hsp92I	GRCGYC	1 cut(s)	320
HspAI	GCGC	2 cut(s)	199, 683
Ksp22I	TGATCA	1 cut(s)	855
Kzo9I	GATC	4 cut(s)	150, 156, 325, 855
LmnI	GCTCC	3 cut(s)	145, 166, 688
Lsp1109I	GCAGC	2 cut(s)	213, 565
LweI	GCATC	2 cut(s)	643, 814
MaeI	CTAG	1 cut(s)	597
MaeII	ACGT	1 cut(s)	320
MalI	GATC	4 cut(s)	152, 158, 327, 857
MbiI	CCGCTC	1 cut(s)	691
MboI	GATC	4 cut(s)	150, 156, 325, 855
MboII	GAAGA	7 cut(s)	100, 298, 509, 742, 791, 794, 812
MhlI	GDGCHC	2 cut(s)	130, 230
MluCI	AATT	1 cut(s)	611
MlyI	GAGTC	1 cut(s)	176
MmeI	TCCRAC	2 cut(s)	131, 462
MseI	TTAA	3 cut(s)	453, 618, 749
MspCI	CTTAAG	1 cut(s)	617
MspI	CCGG	2 cut(s)	111, 131
MspR9I	CCNGG	2 cut(s)	112, 131
MvnI	CGCG	2 cut(s)	155, 679
MwoI	GCNNNNNNNGC	5 cut(s)	205, 406, 431, 575, 691
NciI	CCSGG	2 cut(s)	112, 131
NdeII	GATC	4 cut(s)	150, 156, 325, 855
NlaIV	GGNNCC	2 cut(s)	128, 129
NruI	TCGCGA	1 cut(s)	155
PfeI	GAWTC	1 cut(s)	416
PflMI	CCANNNNNTGG	1 cut(s)	335
PkrI	GCNGC	8 cut(s)	50, 53, 203, 210, 580, 693, 696, 717
PleI	GAGTC	1 cut(s)	176
PpsI	GAGTC	1 cut(s)	176
Psp124BI	GAGCTC	1 cut(s)	230
PspN4I	GGNNCC	2 cut(s)	128, 129
PspOMI	GGGCCC	1 cut(s)	126
PspPI	GGNCC	2 cut(s)	126, 127
RruI	TCGCGA	1 cut(s)	155
RsaI	GTAC	1 cut(s)	595
RsaNI	GTAC	1 cut(s)	594
SacI	GAGCTC	1 cut(s)	230
SaqAI	TTAA	3 cut(s)	453, 618, 749
SatI	GCNGC	8 cut(s)	49, 52, 202, 209, 579, 692, 695, 716
Sau3AI	GATC	4 cut(s)	150, 156, 325, 855
Sau96I	GGNCC	2 cut(s)	126, 127
ScaI	AGTACT	1 cut(s)	595
SchI	GAGTC	1 cut(s)	176
ScrFI	CCNGG	2 cut(s)	112, 131
SduI	GDGCHC	2 cut(s)	130, 230
SfaNI	GCATC	2 cut(s)	643, 814
SmlI	CTYRAG	1 cut(s)	617
SmoI	CTYRAG	1 cut(s)	617
Sse9I	AATT	1 cut(s)	611
SspMI	CTAG	1 cut(s)	597
SstI	GAGCTC	1 cut(s)	230
StyD4I	CCNGG	2 cut(s)	110, 129
TaiI	ACGT	1 cut(s)	323
TaqI	TCGA	3 cut(s)	194, 256, 464
TasI	AATT	1 cut(s)	611
TatI	WGTACW	1 cut(s)	593
TauI	GCSGC	6 cut(s)	51, 54, 211, 694, 697, 718
TfiI	GAWTC	1 cut(s)	416
Tru1I	TTAA	3 cut(s)	453, 618, 749
Tru9I	TTAA	3 cut(s)	453, 618, 749
TscAI	CASTG	7 cut(s)	128, 218, 228, 275, 378, 482, 607
TseI	GCWGC	2 cut(s)	201, 578
TspDTI	ATGAA	1 cut(s)	101
TspGWI	ACGGA	3 cut(s)	149, 175, 749
TspRI	CASTG	7 cut(s)	128, 218, 228, 275, 378, 482, 607
Van91I	CCANNNNNTGG	1 cut(s)	335
Vha464I	CTTAAG	1 cut(s)	617
XspI	CTAG	1 cut(s)	597
ZraI	GACGTC	1 cut(s)	321
ZrmI	AGTACT	1 cut(s)	595

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.