Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr6

Orthogroup ID

OG0029296

Physical Location & Seq

Genomic Coordinates Forward (+)

3094321 .. 3094703

Gene Structure 383 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom06g02540.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 309 bp

ATGGAGTTTTTGGGTTTCTGGGGTTTTGTTTTCACAGCTTCAGTTGGTGGATTTGGTGCTCTACTTTTGATCCTAAAGAAAGCAAACGAATGGCTGTTCGTGAGAAAATTGGGTGAAAACAAGCACACTCTACCTCCGGGTGACCTGGGCTGGCCTTTCATTGGCAACACCTTGTCGTTCATCAAAGCTCTAAAATCCGATCATCCGGAGTCGTTCATCTCCAATCATGTCAAAAGGTTTGTTTGGCAGCACTGGAATTTACAAGGCCTGTTTGTTTGGAAAGCCAACCATAATTGTAACAACAGCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004497 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005783 GO:0006082 GO:0006629 GO:0006694 GO:0006720 GO:0006721 GO:0007275 GO:0008150 GO:0008152 GO:0008202 GO:0008299 GO:0008610 GO:0009058 GO:0009685 GO:0009686 GO:0009987 GO:0010268 GO:0010817 GO:0012505 GO:0016053 GO:0016101 GO:0016102 GO:0016114 GO:0016125 GO:0016128 GO:0016129 GO:0016131 GO:0016132 GO:0016491 GO:0016705 GO:0016709 GO:0019752 GO:0032501 GO:0032502 GO:0042445 GO:0042446 GO:0042592 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043436 GO:0044237 GO:0044238 GO:0044249 GO:0044255 GO:0044281 GO:0044283 GO:0044424 GO:0044444 GO:0044464 GO:0046394 GO:0048856 GO:0048878 GO:0051777 GO:0055088 GO:0055114 GO:0065007 GO:0065008 GO:0071704 GO:1901360 GO:1901362 GO:1901576 GO:1901615 GO:1901617

KEGG Pathways

Metabolic & Signaling

ko00904 ko01100 ko01110 map00904 map01100 map01110

Pfam Domains

Protein Families

p450

Protein Analysis

103

Amino Acids

11.7

Weight (kDa)

9.58

Isoelectric Point (pI)

25.16

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0029296)

Species	Orthologous Gene IDs
pyrus_communis	pycom06g02540
rosa_multiflora	Rmu_co7985212.1_g000001

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccIII	TCCGGA	1 cut(s)	205
AclWI	GGATC	1 cut(s)	64
AcsI	RAATTY	1 cut(s)	256
AcuI	CTGAAG	1 cut(s)	24
AfiI	CCNNNNNNNGG	1 cut(s)	161
AjnI	CCWGG	1 cut(s)	144
AluBI	AGCT	3 cut(s)	38, 188, 306
AluI	AGCT	3 cut(s)	38, 188, 306
Alw21I	GWGCWC	1 cut(s)	61
AlwI	GGATC	1 cut(s)	64
Aor13HI	TCCGGA	1 cut(s)	205
AoxI	GGCC	2 cut(s)	152, 265
ApeKI	GCWGC	1 cut(s)	247
ApoI	RAATTY	1 cut(s)	256
AsuC2I	CCSGG	1 cut(s)	138
AsuHPI	GGTGA	2 cut(s)	125, 152
Bbv12I	GWGCWC	1 cut(s)	61
BbvI	GCAGC	1 cut(s)	259
BciT130I	CCWGG	1 cut(s)	146
BcnI	CCSGG	1 cut(s)	138
BisI	GCNGC	1 cut(s)	248
BlsI	GCNGC	1 cut(s)	249
Bme1390I	CCNGG	2 cut(s)	138, 146
BmrFI	CCNGG	2 cut(s)	138, 146
BpuMI	CCSGG	1 cut(s)	138
BsaJI	CCNNGG	1 cut(s)	145
BsaWI	WCCGGW	1 cut(s)	205
BsaXI	ACNNNNNCTCC	2 cut(s)	118, 148
Bsc4I	CCNNNNNNNGG	1 cut(s)	161
Bse1I	ACTGG	1 cut(s)	257
BseAI	TCCGGA	1 cut(s)	205
BseBI	CCWGG	1 cut(s)	146
BseDI	CCNNGG	1 cut(s)	145
BseGI	GGATG	1 cut(s)	202
BseLI	CCNNNNNNNGG	1 cut(s)	161
BseNI	ACTGG	1 cut(s)	257
BseXI	GCAGC	1 cut(s)	259
BshFI	GGCC	2 cut(s)	154, 267
BsiHKAI	GWGCWC	1 cut(s)	61
BsiSI	CCGG	2 cut(s)	137, 206
BslI	CCNNNNNNNGG	1 cut(s)	161
BsnI	GGCC	2 cut(s)	154, 267
Bsp1286I	GDGCHC	1 cut(s)	61
Bsp13I	TCCGGA	1 cut(s)	205
Bsp143I	GATC	2 cut(s)	69, 199
BspANI	GGCC	2 cut(s)	154, 267
BspEI	TCCGGA	1 cut(s)	205
BspPI	GGATC	1 cut(s)	64
BsrI	ACTGG	1 cut(s)	257
BssECI	CCNNGG	1 cut(s)	145
BssMI	GATC	2 cut(s)	69, 199
Bst2UI	CCWGG	1 cut(s)	146
BstC8I	GCNNGC	1 cut(s)	152
BstEII	GGTNACC	1 cut(s)	140
BstF5I	GGATG	1 cut(s)	202
BstKTI	GATC	2 cut(s)	72, 202
BstMBI	GATC	2 cut(s)	69, 199
BstNI	CCWGG	1 cut(s)	146
BstPI	GGTNACC	1 cut(s)	140
BstSCI	CCNGG	2 cut(s)	136, 144
BstV1I	GCAGC	1 cut(s)	259
BsuRI	GGCC	2 cut(s)	154, 267
BtsCI	GGATG	1 cut(s)	202
BtsIMutI	CAGTG	1 cut(s)	250
Cac8I	GCNNGC	1 cut(s)	152
CviAII	CATG	1 cut(s)	227
CviJI	RGCY	8 cut(s)	38, 94, 150, 154, 188, 267, 284, 306
CviKI_1	RGCY	8 cut(s)	38, 94, 150, 154, 188, 267, 284, 306
DpnI	GATC	2 cut(s)	71, 201
DpnII	GATC	2 cut(s)	69, 199
Eco147I	AGGCCT	1 cut(s)	267
Eco57I	CTGAAG	1 cut(s)	24
Eco91I	GGTNACC	1 cut(s)	140
EcoO65I	GGTNACC	1 cut(s)	140
EcoRII	CCWGG	1 cut(s)	144
FaeI	CATG	1 cut(s)	230
FaiI	YATR	2 cut(s)	228, 291
FatI	CATG	1 cut(s)	226
Fnu4HI	GCNGC	1 cut(s)	248
FokI	GGATG	1 cut(s)	189
Fsp4HI	GCNGC	1 cut(s)	248
GluI	GCNGC	1 cut(s)	248
HaeIII	GGCC	2 cut(s)	154, 267
HapII	CCGG	2 cut(s)	137, 206
Hin1II	CATG	1 cut(s)	230
HinfI	GANTC	1 cut(s)	209
HpaII	CCGG	2 cut(s)	137, 206
HphI	GGTGA	2 cut(s)	125, 152
Hpy188I	TCNGA	1 cut(s)	199
Hpy188III	TCNNGA	2 cut(s)	100, 206
Hsp92II	CATG	1 cut(s)	230
Kpn2I	TCCGGA	1 cut(s)	205
Kzo9I	GATC	2 cut(s)	69, 199
LpnPI	CCDG	8 cut(s)	4, 131, 136, 150, 158, 219, 238, 281
Lsp1109I	GCAGC	1 cut(s)	259
MaeIII	GTNAC	2 cut(s)	140, 296
MalI	GATC	2 cut(s)	71, 201
MboI	GATC	2 cut(s)	69, 199
MhlI	GDGCHC	1 cut(s)	61
MluCI	AATT	3 cut(s)	107, 256, 292
MlyI	GAGTC	1 cut(s)	218
MnlI	CCTC	1 cut(s)	144
MroI	TCCGGA	1 cut(s)	205
MspA1I	CMGCKG	1 cut(s)	306
MspI	CCGG	2 cut(s)	137, 206
MspR9I	CCNGG	2 cut(s)	138, 146
MvaI	CCWGG	1 cut(s)	146
NciI	CCSGG	1 cut(s)	138
NdeII	GATC	2 cut(s)	69, 199
NlaIII	CATG	1 cut(s)	230
NmuCI	GTSAC	1 cut(s)	140
PceI	AGGCCT	1 cut(s)	267
PkrI	GCNGC	1 cut(s)	249
PleI	GAGTC	1 cut(s)	217
PpsI	GAGTC	1 cut(s)	217
Psp6I	CCWGG	1 cut(s)	144
PspEI	GGTNACC	1 cut(s)	140
PspGI	CCWGG	1 cut(s)	144
PvuII	CAGCTG	1 cut(s)	306
SatI	GCNGC	1 cut(s)	248
Sau3AI	GATC	2 cut(s)	69, 199
SchI	GAGTC	1 cut(s)	218
ScrFI	CCNGG	2 cut(s)	138, 146
SduI	GDGCHC	1 cut(s)	61
SetI	ASST	7 cut(s)	40, 136, 147, 173, 190, 239, 308
Sse9I	AATT	3 cut(s)	107, 256, 292
SseBI	AGGCCT	1 cut(s)	267
StuI	AGGCCT	1 cut(s)	267
StyD4I	CCNGG	2 cut(s)	136, 144
TasI	AATT	3 cut(s)	107, 256, 292
TscAI	CASTG	1 cut(s)	257
TseFI	GTSAC	1 cut(s)	140
TseI	GCWGC	1 cut(s)	247
Tsp45I	GTSAC	1 cut(s)	140
TspDTI	ATGAA	3 cut(s)	148, 169, 205
TspRI	CASTG	1 cut(s)	257
XapI	RAATTY	1 cut(s)	256

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.