pycom06g02890

glycine-rich cell wall structural protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr6
OG0028316
Physical Location & Seq
Reverse (-)
3514592 .. 3515636
1045 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 600 bp
ATGAATAGTATGCAATTTAAGTTACACCGCCTTCATTTCTTACTCCACACTTGTGGGATTCGATCGAGTGGCAGTAACCTCTCAGTCCCAGTCATGGCTCCTCCTCAAAAGATTGCTAGCGTTGCTTTCCTTGTGATGTTAAGTTTAGGAATTTGTTGTGCCACCAGAGCCCTTTTTACTACTGAACAATTTGGAGCCCACACCCTGTCTACTACTGATGCTGTAGGAGGGGGATATGGTGGCGGTAGTGGAGAAGGGGGTGGTGCTGGCTACGGAACTGCTGGTGGGGGAGGACACGGTGGTGGAGGCGGTGGCGGTAGTGGTGGTGGCGGTGGTGCTGCAGCTGGAGGTGCTGGGTTTGGAAGTGGGGCTGGTGAAGGAGGAGGTGCAGGGTATGGTGCTGGAGGAGAACATGGGGCTGGATATGGTGGAGGTGGTGGTGGTGGTAGCGGTGGTGGTGGTGGAGGAGGTGTAGGTTCTGGAGTAGGAGGTGGTGAAGGAGGTGGTTCTGGAGGTGGTTATGGTGCTGGAGGAGGAGCAGCAGCAGGTGGTGGCCATGGAGGAGGAGGAGGTGGTGGGAAAAGGTGGAGGGGCTGGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

200

Amino Acids

17.36

Weight (kDa)

8.54

Isoelectric Point (pI)

37.43

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0028316)

Species Orthologous Gene IDs
malus_domestica MD06G1034900.v1.1
pyrus_communis pycom06g02890

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 536
Acc36I ACCTGC 1 cut(s) 536
AccI GTMKAC 1 cut(s) 209
AciI CCGC 6 cut(s) 28, 243, 309, 315, 330, 450
AcoI YGGCCR 1 cut(s) 553
AcsI RAATTY 1 cut(s) 150
AfiI CCNNNNNNNGG 1 cut(s) 94
AleI CACNNNNGTG 2 cut(s) 51, 300
AluBI AGCT 1 cut(s) 344
AluI AGCT 1 cut(s) 344
AoxI GGCC 1 cut(s) 553
ApeKI GCWGC 4 cut(s) 338, 341, 539, 542
ApoI RAATTY 1 cut(s) 150
AsuHPI GGTGA 2 cut(s) 386, 506
AsuNHI GCTAGC 1 cut(s) 116
BalI TGGCCA 1 cut(s) 555
BanII GRGCYC 2 cut(s) 172, 199
BbvI GCAGC 4 cut(s) 325, 353, 551, 554
BfaI CTAG 1 cut(s) 117
BfmI CTRYAG 2 cut(s) 222, 339
BfuAI ACCTGC 1 cut(s) 536
BisI GCNGC 4 cut(s) 339, 342, 540, 543
BlsI GCNGC 4 cut(s) 340, 343, 541, 544
BmiI GGNNCC 2 cut(s) 99, 196
BmrI ACTGGG 1 cut(s) 83
BmsI GCATC 1 cut(s) 208
BmtI GCTAGC 1 cut(s) 120
BmuI ACTGGG 1 cut(s) 83
BpmI CTGGAG 5 cut(s) 366, 423, 501, 531, 549
BsaJI CCNNGG 1 cut(s) 556
BsaXI ACNNNNNCTCC 2 cut(s) 456, 486
Bsc4I CCNNNNNNNGG 1 cut(s) 94
Bse1I ACTGG 1 cut(s) 89
BseDI CCNNGG 1 cut(s) 556
BseLI CCNNNNNNNGG 1 cut(s) 94
BseMII CTCAG 1 cut(s) 96
BseNI ACTGG 1 cut(s) 89
BseXI GCAGC 4 cut(s) 325, 353, 551, 554
BseYI CCCAGC 1 cut(s) 353
BsgI GTGCAG 1 cut(s) 408
Bsh1285I CGRYCG 1 cut(s) 65
BshFI GGCC 1 cut(s) 555
BsiEI CGRYCG 1 cut(s) 65
BslFI GGGAC 1 cut(s) 71
BslI CCNNNNNNNGG 1 cut(s) 94
BsmFI GGGAC 1 cut(s) 71
BsnI GGCC 1 cut(s) 555
Bsp1286I GDGCHC 2 cut(s) 172, 199
Bsp143I GATC 1 cut(s) 62
Bsp19I CCATGG 1 cut(s) 556
BspACI CCGC 6 cut(s) 28, 243, 309, 315, 330, 450
BspANI GGCC 1 cut(s) 555
BspCNI CTCAG 1 cut(s) 95
BspLI GGNNCC 2 cut(s) 99, 196
BspMAI CTGCAG 1 cut(s) 343
BspMI ACCTGC 1 cut(s) 536
BspOI GCTAGC 1 cut(s) 120
BsrI ACTGG 1 cut(s) 89
BssECI CCNNGG 1 cut(s) 556
BssMI GATC 1 cut(s) 62
BssT1I CCWWGG 1 cut(s) 556
Bst4CI ACNGT 1 cut(s) 299
BstC8I GCNNGC 2 cut(s) 118, 268
BstDEI CTNAG 1 cut(s) 82
BstDSI CCRYGG 1 cut(s) 556
BstKTI GATC 1 cut(s) 65
BstMBI GATC 1 cut(s) 62
BstMCI CGRYCG 1 cut(s) 65
BstMWI GCNNNNNNNGC 3 cut(s) 122, 167, 350
BstSFI CTRYAG 2 cut(s) 222, 339
BstV1I GCAGC 4 cut(s) 325, 353, 551, 554
BstXI CCANNNNNNTGG 1 cut(s) 53
BsuRI GGCC 1 cut(s) 555
BtgI CCRYGG 1 cut(s) 556
BveI ACCTGC 1 cut(s) 536
Cac8I GCNNGC 2 cut(s) 118, 268
CviAII CATG 3 cut(s) 94, 413, 557
CviJI RGCY 9 cut(s) 98, 170, 197, 270, 344, 371, 419, 555, 594
CviKI_1 RGCY 9 cut(s) 98, 170, 197, 270, 344, 371, 419, 555, 594
DdeI CTNAG 1 cut(s) 82
DpnI GATC 1 cut(s) 64
DpnII GATC 1 cut(s) 62
EaeI YGGCCR 1 cut(s) 553
Eco130I CCWWGG 1 cut(s) 556
Eco24I GRGCYC 2 cut(s) 172, 199
EcoT14I CCWWGG 1 cut(s) 556
EcoT38I GRGCYC 2 cut(s) 172, 199
ErhI CCWWGG 1 cut(s) 556
FaeI CATG 3 cut(s) 97, 416, 560
FaiI YATR 8 cut(s) 11, 95, 237, 396, 414, 426, 522, 558
FaqI GGGAC 1 cut(s) 71
FatI CATG 3 cut(s) 93, 412, 556
FblI GTMKAC 1 cut(s) 209
Fnu4HI GCNGC 4 cut(s) 339, 342, 540, 543
FriOI GRGCYC 2 cut(s) 172, 199
Fsp4HI GCNGC 4 cut(s) 339, 342, 540, 543
FspBI CTAG 1 cut(s) 117
GluI GCNGC 4 cut(s) 339, 342, 540, 543
GsaI CCCAGC 1 cut(s) 357
GsuI CTGGAG 5 cut(s) 366, 423, 501, 531, 549
HaeIII GGCC 1 cut(s) 555
Hin1II CATG 3 cut(s) 97, 416, 560
HinfI GANTC 1 cut(s) 58
HphI GGTGA 2 cut(s) 386, 506
Hpy166II GTNNAC 1 cut(s) 210
Hpy188III TCNNGA 2 cut(s) 480, 510
Hpy8I GTNNAC 1 cut(s) 210
HpyAV CCTTC 4 cut(s) 41, 248, 371, 491
HpyCH4III ACNGT 1 cut(s) 299
HpyCH4V TGCA 3 cut(s) 13, 341, 389
HpyF10VI GCNNNNNNNGC 3 cut(s) 122, 167, 350
HpyF3I CTNAG 1 cut(s) 82
Hsp92II CATG 3 cut(s) 97, 416, 560
Kzo9I GATC 1 cut(s) 62
LmnI GCTCC 3 cut(s) 103, 194, 536
Lsp1109I GCAGC 4 cut(s) 325, 353, 551, 554
LweI GCATC 1 cut(s) 208
MaeI CTAG 1 cut(s) 117
MaeIII GTNAC 2 cut(s) 21, 74
MalI GATC 1 cut(s) 64
MboI GATC 1 cut(s) 62
MhlI GDGCHC 2 cut(s) 172, 199
MlsI TGGCCA 1 cut(s) 555
MluCI AATT 3 cut(s) 14, 150, 188
MluNI TGGCCA 1 cut(s) 555
Mox20I TGGCCA 1 cut(s) 555
MscI TGGCCA 1 cut(s) 555
MseI TTAA 2 cut(s) 18, 140
MslI CAYNNNNRTG 2 cut(s) 51, 300
Msp20I TGGCCA 1 cut(s) 555
MspA1I CMGCKG 1 cut(s) 344
MwoI GCNNNNNNNGC 3 cut(s) 122, 167, 350
NcoI CCATGG 1 cut(s) 556
NdeII GATC 1 cut(s) 62
NheI GCTAGC 1 cut(s) 116
NlaIII CATG 3 cut(s) 97, 416, 560
NlaIV GGNNCC 2 cut(s) 99, 196
OliI CACNNNNGTG 2 cut(s) 51, 300
PaqCI CACCTGC 1 cut(s) 536
PfeI GAWTC 1 cut(s) 58
PkrI GCNGC 4 cut(s) 340, 343, 541, 544
Ple19I CGATCG 1 cut(s) 65
PspFI CCCAGC 1 cut(s) 353
PspN4I GGNNCC 2 cut(s) 99, 196
PstI CTGCAG 1 cut(s) 343
PvuI CGATCG 1 cut(s) 65
PvuII CAGCTG 1 cut(s) 344
RseI CAYNNNNRTG 2 cut(s) 51, 300
SaqAI TTAA 2 cut(s) 18, 140
SatI GCNGC 4 cut(s) 339, 342, 540, 543
Sau3AI GATC 1 cut(s) 62
SduI GDGCHC 2 cut(s) 172, 199
SfaNI GCATC 1 cut(s) 208
SfcI CTRYAG 2 cut(s) 222, 339
SmiMI CAYNNNNRTG 2 cut(s) 51, 300
Sse9I AATT 3 cut(s) 14, 150, 188
SsiI CCGC 6 cut(s) 28, 243, 309, 315, 330, 450
SspMI CTAG 1 cut(s) 117
StyI CCWWGG 1 cut(s) 556
TaaI ACNGT 1 cut(s) 299
TaqI TCGA 2 cut(s) 61, 65
TasI AATT 3 cut(s) 14, 150, 188
TfiI GAWTC 1 cut(s) 58
Tru1I TTAA 2 cut(s) 18, 140
Tru9I TTAA 2 cut(s) 18, 140
TseI GCWGC 4 cut(s) 338, 341, 539, 542
TspDTI ATGAA 2 cut(s) 17, 23
TspGWI ACGGA 1 cut(s) 288
XapI RAATTY 1 cut(s) 150
XmiI GTMKAC 1 cut(s) 209
XspI CTAG 1 cut(s) 117
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.