pycom06g06000

xyloglucan galactosyltransferase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr6
OG0029298
Physical Location & Seq
Forward (+)
9222318 .. 9223004
687 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom06g06000.2

Sequence Viewer

Length: 609 bp
ATGGTAGGAACACGCTATGCCTTTCCGACGTCGTTTCATCCGCCCAATTTGTCCTTATTGGAGACGTGGTTGCAGCGGGCGAGGTGGTTCCGCCACACCACGCTTATGATGTTCGCCGACGGCGGTGGTGTTGGAAATAATCCGAACATTAGGAGGAGTATCAGGAACGAGTGCAAAAAGAACACCAAAGCAAATAATGCGACGTCAAACAACAATTTGGGGAGGTTTGGAAGTGGGGGTGCTGGGTACACAAAGATATGTGACATTGTGGATTGCTCCCATGGGATATGTGAGCATGACCCAATTAGGTTCATGAGGCCAATGTTGCAGGCTAGTTTCTGCTTGCAGCCTCCAGGTGACACCCTGACAAGGCAGTCCACATTCAACAGCATTGTGGCTGGCTGCATCCCCGTATTCCTTGAGGACTCGTCCGCCAAAGCGCAGTACCAGTGCCACTTGCCGGAGGATTACATTCCTAGGGCTAGAGTGAGGAGGATGAGGGAGAAGGTGTTGGAGATGATGCCAAGAGTTATGTATAGAAGGCATGGGAGCTCAATGGGATTGAGAGCTAAGAAGGATGCTGTTGATCTTGCAATTGATGGTGTTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Exostosin

Protein Analysis

203

Amino Acids

22.75

Weight (kDa)

9.67

Isoelectric Point (pI)

47.35

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0029298)

Species Orthologous Gene IDs
pyrus_communis pycom06g06000 pycom08g11490

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 373
AatII GACGTC 2 cut(s) 32, 206
AciI CCGC 5 cut(s) 41, 76, 91, 123, 432
AcyI GRCGYC 2 cut(s) 29, 203
AfaI GTAC 2 cut(s) 248, 446
AfiI CCNNNNNNNGG 2 cut(s) 369, 460
AgsI TTSAA 1 cut(s) 385
AjiI CACGTC 1 cut(s) 66
AjnI CCWGG 1 cut(s) 352
AluBI AGCT 2 cut(s) 552, 569
AluI AGCT 2 cut(s) 552, 569
Alw21I GWGCWC 1 cut(s) 554
Alw26I GTCTC 1 cut(s) 56
AoxI GGCC 1 cut(s) 317
ApeKI GCWGC 3 cut(s) 73, 346, 402
AspA2I CCTAGG 1 cut(s) 476
AspLEI GCGC 1 cut(s) 442
AsuHPI GGTGA 1 cut(s) 368
AvrII CCTAGG 1 cut(s) 476
BanII GRGCYC 1 cut(s) 554
Bbv12I GWGCWC 1 cut(s) 554
BbvI GCAGC 3 cut(s) 85, 358, 389
BccI CCATC 1 cut(s) 593
BceAI ACGGC 1 cut(s) 136
BciT130I CCWGG 1 cut(s) 354
BcoDI GTCTC 1 cut(s) 56
BfaI CTAG 3 cut(s) 333, 477, 483
BisI GCNGC 3 cut(s) 74, 347, 403
BlnI CCTAGG 1 cut(s) 476
BlsI GCNGC 3 cut(s) 75, 348, 404
Bme1390I CCNGG 1 cut(s) 354
BmgBI CACGTC 1 cut(s) 66
BmiI GGNNCC 1 cut(s) 89
BmrFI CCNGG 1 cut(s) 354
BmsI GCATC 3 cut(s) 414, 510, 568
BpmI CTGGAG 1 cut(s) 336
BpuEI CTTGAG 1 cut(s) 440
BsaHI GRCGYC 2 cut(s) 29, 203
BsaJI CCNNGG 2 cut(s) 280, 476
BsaXI ACNNNNNCTCC 4 cut(s) 53, 83, 494, 524
Bsc4I CCNNNNNNNGG 2 cut(s) 369, 460
Bse1I ACTGG 1 cut(s) 448
BseBI CCWGG 1 cut(s) 354
BseDI CCNNGG 2 cut(s) 280, 476
BseGI GGATG 4 cut(s) 37, 405, 501, 583
BseLI CCNNNNNNNGG 2 cut(s) 369, 460
BseNI ACTGG 1 cut(s) 448
BseRI GAGGAG 2 cut(s) 169, 505
BseXI GCAGC 3 cut(s) 85, 358, 389
BseYI CCCAGC 1 cut(s) 242
BshFI GGCC 1 cut(s) 319
BsiHKAI GWGCWC 1 cut(s) 554
BsiSI CCGG 1 cut(s) 461
BslI CCNNNNNNNGG 2 cut(s) 369, 460
BsmAI GTCTC 1 cut(s) 56
BsmBI CGTCTC 1 cut(s) 56
BsnI GGCC 1 cut(s) 319
Bsp1286I GDGCHC 1 cut(s) 554
Bsp143I GATC 1 cut(s) 586
Bsp19I CCATGG 1 cut(s) 280
BspACI CCGC 5 cut(s) 41, 76, 91, 123, 432
BspANI GGCC 1 cut(s) 319
BspHI TCATGA 1 cut(s) 312
BspLI GGNNCC 1 cut(s) 89
BsrI ACTGG 1 cut(s) 448
BssECI CCNNGG 2 cut(s) 280, 476
BssMI GATC 1 cut(s) 586
BssNI GRCGYC 2 cut(s) 29, 203
BssT1I CCWWGG 2 cut(s) 280, 476
Bst2UI CCWGG 1 cut(s) 354
BstACI GRCGYC 2 cut(s) 29, 203
BstAPI GCANNNNNTGC 1 cut(s) 197
BstC8I GCNNGC 4 cut(s) 78, 330, 344, 400
BstDEI CTNAG 1 cut(s) 570
BstDSI CCRYGG 1 cut(s) 280
BstF5I GGATG 4 cut(s) 37, 405, 501, 583
BstHHI GCGC 1 cut(s) 442
BstKTI GATC 1 cut(s) 589
BstMAI GTCTC 1 cut(s) 56
BstMBI GATC 1 cut(s) 586
BstMWI GCNNNNNNNGC 2 cut(s) 197, 325
BstNI CCWGG 1 cut(s) 354
BstSCI CCNGG 1 cut(s) 352
BstV1I GCAGC 3 cut(s) 85, 358, 389
BsuRI GGCC 1 cut(s) 319
BtgI CCRYGG 1 cut(s) 280
BtrI CACGTC 1 cut(s) 66
BtsCI GGATG 4 cut(s) 37, 405, 501, 583
BtsIMutI CAGTG 1 cut(s) 455
Cac8I GCNNGC 4 cut(s) 78, 330, 344, 400
CciI TCATGA 1 cut(s) 312
CfoI GCGC 1 cut(s) 442
Csp6I GTAC 2 cut(s) 247, 445
CviAII CATG 4 cut(s) 281, 296, 313, 545
CviJI RGCY 8 cut(s) 319, 332, 349, 398, 402, 482, 552, 569
CviKI_1 RGCY 8 cut(s) 319, 332, 349, 398, 402, 482, 552, 569
CviQI GTAC 2 cut(s) 247, 445
DdeI CTNAG 1 cut(s) 570
DpnI GATC 1 cut(s) 588
DpnII GATC 1 cut(s) 586
DrdI GACNNNNNNGTC 1 cut(s) 373
DseDI GACNNNNNNGTC 1 cut(s) 373
EciI GGCGGA 3 cut(s) 30, 80, 421
Ecl136II GAGCTC 1 cut(s) 552
Eco130I CCWWGG 2 cut(s) 280, 476
Eco24I GRGCYC 1 cut(s) 554
Eco53kI GAGCTC 1 cut(s) 552
EcoICRI GAGCTC 1 cut(s) 552
EcoRII CCWGG 1 cut(s) 352
EcoT14I CCWWGG 2 cut(s) 280, 476
EcoT38I GRGCYC 1 cut(s) 554
ErhI CCWWGG 2 cut(s) 280, 476
Esp3I CGTCTC 1 cut(s) 56
FaeI CATG 4 cut(s) 284, 299, 316, 548
FatI CATG 4 cut(s) 280, 295, 312, 544
FauI CCCGC 1 cut(s) 69
Fnu4HI GCNGC 3 cut(s) 74, 347, 403
FokI GGATG 4 cut(s) 24, 392, 508, 590
FriOI GRGCYC 1 cut(s) 554
Fsp4HI GCNGC 3 cut(s) 74, 347, 403
FspBI CTAG 3 cut(s) 333, 477, 483
GlaI GCGC 1 cut(s) 441
GluI GCNGC 3 cut(s) 74, 347, 403
GsaI CCCAGC 1 cut(s) 246
GsuI CTGGAG 1 cut(s) 336
HaeIII GGCC 1 cut(s) 319
HapII CCGG 1 cut(s) 461
HhaI GCGC 1 cut(s) 442
Hin1I GRCGYC 2 cut(s) 29, 203
Hin1II CATG 4 cut(s) 284, 299, 316, 548
Hin6I GCGC 1 cut(s) 440
HinP1I GCGC 1 cut(s) 440
HinfI GANTC 1 cut(s) 425
HpaII CCGG 1 cut(s) 461
HphI GGTGA 1 cut(s) 368
Hpy166II GTNNAC 2 cut(s) 249, 378
Hpy188I TCNGA 2 cut(s) 27, 144
Hpy188III TCNNGA 2 cut(s) 163, 313
Hpy8I GTNNAC 2 cut(s) 249, 378
Hpy99I CGWCG 4 cut(s) 31, 34, 122, 205
HpyAV CCTTC 3 cut(s) 499, 534, 568
HpyCH4IV ACGT 3 cut(s) 29, 65, 203
HpyCH4V TGCA 6 cut(s) 73, 174, 328, 346, 405, 593
HpyF10VI GCNNNNNNNGC 2 cut(s) 197, 325
HpyF3I CTNAG 1 cut(s) 570
HpySE526I ACGT 3 cut(s) 29, 65, 203
Hsp92I GRCGYC 2 cut(s) 29, 203
Hsp92II CATG 4 cut(s) 284, 299, 316, 548
HspAI GCGC 1 cut(s) 440
Kzo9I GATC 1 cut(s) 586
LmnI GCTCC 2 cut(s) 281, 549
LpnPI CCDG 9 cut(s) 148, 228, 314, 339, 366, 377, 384, 461, 474
Lsp1109I GCAGC 3 cut(s) 85, 358, 389
LweI GCATC 3 cut(s) 414, 510, 568
MaeI CTAG 3 cut(s) 333, 477, 483
MaeII ACGT 3 cut(s) 29, 65, 203
MaeIII GTNAC 2 cut(s) 260, 356
MalI GATC 1 cut(s) 588
MboI GATC 1 cut(s) 586
MfeI CAATTG 1 cut(s) 594
MhlI GDGCHC 1 cut(s) 554
MluCI AATT 4 cut(s) 46, 214, 303, 594
MlyI GAGTC 1 cut(s) 419
MmeI TCCRAC 3 cut(s) 50, 112, 492
MslI CAYNNNNRTG 1 cut(s) 104
MspA1I CMGCKG 1 cut(s) 76
MspI CCGG 1 cut(s) 461
MspR9I CCNGG 1 cut(s) 354
MunI CAATTG 1 cut(s) 594
MvaI CCWGG 1 cut(s) 354
MwoI GCNNNNNNNGC 2 cut(s) 197, 325
NcoI CCATGG 1 cut(s) 280
NdeII GATC 1 cut(s) 586
NlaIII CATG 4 cut(s) 284, 299, 316, 548
NlaIV GGNNCC 1 cut(s) 89
NmuCI GTSAC 2 cut(s) 260, 356
PagI TCATGA 1 cut(s) 312
PkrI GCNGC 3 cut(s) 75, 348, 404
PleI GAGTC 1 cut(s) 419
PpsI GAGTC 1 cut(s) 419
Psp124BI GAGCTC 1 cut(s) 554
Psp6I CCWGG 1 cut(s) 352
PspFI CCCAGC 1 cut(s) 242
PspGI CCWGG 1 cut(s) 352
PspN4I GGNNCC 1 cut(s) 89
RsaI GTAC 2 cut(s) 248, 446
RsaNI GTAC 2 cut(s) 247, 445
RseI CAYNNNNRTG 1 cut(s) 104
SacI GAGCTC 1 cut(s) 554
SatI GCNGC 3 cut(s) 74, 347, 403
Sau3AI GATC 1 cut(s) 586
SchI GAGTC 1 cut(s) 419
ScrFI CCNGG 1 cut(s) 354
SduI GDGCHC 1 cut(s) 554
SfaNI GCATC 3 cut(s) 414, 510, 568
SmiMI CAYNNNNRTG 1 cut(s) 104
SmlI CTYRAG 1 cut(s) 419
SmoI CTYRAG 1 cut(s) 419
Sse9I AATT 4 cut(s) 46, 214, 303, 594
SsiI CCGC 5 cut(s) 41, 76, 91, 123, 432
SspMI CTAG 3 cut(s) 333, 477, 483
SstI GAGCTC 1 cut(s) 554
StyD4I CCNGG 1 cut(s) 352
StyI CCWWGG 2 cut(s) 280, 476
TaiI ACGT 3 cut(s) 32, 68, 206
TasI AATT 4 cut(s) 46, 214, 303, 594
TscAI CASTG 1 cut(s) 455
TseFI GTSAC 2 cut(s) 260, 356
TseI GCWGC 3 cut(s) 73, 346, 402
Tsp45I GTSAC 2 cut(s) 260, 356
TspDTI ATGAA 2 cut(s) 26, 301
TspRI CASTG 1 cut(s) 455
XmaJI CCTAGG 1 cut(s) 476
XspI CTAG 3 cut(s) 333, 477, 483
ZraI GACGTC 2 cut(s) 30, 204
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.