pycom06g06370

zinc finger

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr6
OG0021251
Physical Location & Seq
Reverse (-)
9960059 .. 9962684
2626 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom06g06370.2

Sequence Viewer

Length: 330 bp
ATGATTGACATGTGCTGTAAATTTGAAAAATGTTTCAAAAAGGACAGTGGGAGTGAGAATGCAAAAACAAGGAAAAGGTTACATAAGAAGAAGGCAAAGAAATCCAAAGGAACATGCTTTCATTGTGGAAAGGATGAACGTTGGAAGAAGAAATACAGGGTGCGCATTGCGAGCCTTATGACACGAACTTTTGAAGAGACTATTTCGGTCATAGAAAGTGCTTTTATAGTGAGCTCCAATTCCTGGATATTTGATTCAGGCGCTAGTCAACATATCTGTAATACGATGCAGGGACTACAGAGAGCAAGACACTGCGCAATGGGGAGATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

110

Amino Acids

12.61

Weight (kDa)

9.92

Isoelectric Point (pI)

40.44

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0021251)

Species Orthologous Gene IDs
pyrus_communis pycom01g00030 pycom03g10950 pycom06g06370 pycom06g08850 pycom07g11760

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc16I TGCGCA 2 cut(s) 164, 316
AccB7I CCANNNNNTGG 1 cut(s) 243
AclI AACGTT 1 cut(s) 139
AcsI RAATTY 1 cut(s) 20
AfiI CCNNNNNNNGG 1 cut(s) 243
AflIII ACRYGT 1 cut(s) 9
AgsI TTSAA 3 cut(s) 26, 37, 194
AjnI CCWGG 1 cut(s) 242
AluBI AGCT 1 cut(s) 234
AluI AGCT 1 cut(s) 234
Alw21I GWGCWC 1 cut(s) 236
Alw26I GTCTC 1 cut(s) 191
ApoI RAATTY 1 cut(s) 20
AspLEI GCGC 3 cut(s) 165, 263, 317
BanII GRGCYC 1 cut(s) 236
BarI GAAGNNNNNNTAC 2 cut(s) 137, 169
Bbv12I GWGCWC 1 cut(s) 236
BciT130I CCWGG 1 cut(s) 244
BcoDI GTCTC 1 cut(s) 191
BfaI CTAG 1 cut(s) 264
BfmI CTRYAG 1 cut(s) 296
BfoI RGCGCY 1 cut(s) 264
Bme1390I CCNGG 1 cut(s) 244
BmrFI CCNGG 1 cut(s) 244
BmsI GCATC 1 cut(s) 276
Bsc4I CCNNNNNNNGG 1 cut(s) 243
Bse3DI GCAATG 2 cut(s) 165, 324
BseBI CCWGG 1 cut(s) 244
BseGI GGATG 1 cut(s) 139
BseLI CCNNNNNNNGG 1 cut(s) 243
BseMI GCAATG 2 cut(s) 165, 324
BsiHKAI GWGCWC 1 cut(s) 236
BslFI GGGAC 1 cut(s) 306
BslI CCNNNNNNNGG 1 cut(s) 243
BsmAI GTCTC 1 cut(s) 191
BsmFI GGGAC 1 cut(s) 306
BsmI GAATGC 1 cut(s) 64
Bsp1286I GDGCHC 1 cut(s) 236
BsrDI GCAATG 2 cut(s) 165, 324
Bst2UI CCWGG 1 cut(s) 244
Bst4CI ACNGT 1 cut(s) 47
Bst6I CTCTTC 1 cut(s) 189
BstC8I GCNNGC 1 cut(s) 172
BstF5I GGATG 1 cut(s) 139
BstH2I RGCGCY 1 cut(s) 264
BstHHI GCGC 3 cut(s) 165, 263, 317
BstMAI GTCTC 1 cut(s) 191
BstMWI GCNNNNNNNGC 1 cut(s) 171
BstNI CCWGG 1 cut(s) 244
BstNSI RCATGY 2 cut(s) 13, 117
BstSCI CCNGG 1 cut(s) 242
BstSFI CTRYAG 1 cut(s) 296
BtsCI GGATG 1 cut(s) 139
BtsI GCAGTG 1 cut(s) 310
BtsIMutI CAGTG 2 cut(s) 52, 310
Cac8I GCNNGC 1 cut(s) 172
CfoI GCGC 3 cut(s) 165, 263, 317
CviAII CATG 2 cut(s) 10, 114
CviJI RGCY 2 cut(s) 174, 234
CviKI_1 RGCY 2 cut(s) 174, 234
Eam1104I CTCTTC 1 cut(s) 189
EarI CTCTTC 1 cut(s) 189
Ecl136II GAGCTC 1 cut(s) 234
Eco24I GRGCYC 1 cut(s) 236
Eco53kI GAGCTC 1 cut(s) 234
EcoICRI GAGCTC 1 cut(s) 234
EcoRII CCWGG 1 cut(s) 242
EcoT38I GRGCYC 1 cut(s) 236
FaeI CATG 2 cut(s) 13, 117
FaiI YATR 7 cut(s) 11, 84, 115, 179, 212, 227, 273
FaqI GGGAC 1 cut(s) 306
FatI CATG 2 cut(s) 9, 113
FokI GGATG 1 cut(s) 146
FriOI GRGCYC 1 cut(s) 236
FspAI RTGCGCAY 1 cut(s) 164
FspBI CTAG 1 cut(s) 264
FspI TGCGCA 2 cut(s) 164, 316
GlaI GCGC 3 cut(s) 164, 262, 316
HaeII RGCGCY 1 cut(s) 264
HhaI GCGC 3 cut(s) 165, 263, 317
Hin1II CATG 2 cut(s) 13, 117
Hin6I GCGC 3 cut(s) 163, 261, 315
HinP1I GCGC 3 cut(s) 163, 261, 315
HincII GTYRAC 1 cut(s) 269
HindII GTYRAC 1 cut(s) 269
HinfI GANTC 1 cut(s) 254
Hpy166II GTNNAC 1 cut(s) 269
Hpy8I GTNNAC 1 cut(s) 269
HpyAV CCTTC 1 cut(s) 85
HpyCH4III ACNGT 1 cut(s) 47
HpyCH4IV ACGT 1 cut(s) 139
HpyCH4V TGCA 2 cut(s) 62, 289
HpyF10VI GCNNNNNNNGC 1 cut(s) 171
HpySE526I ACGT 1 cut(s) 139
Hsp92II CATG 2 cut(s) 13, 117
HspAI GCGC 3 cut(s) 163, 261, 315
LmnI GCTCC 1 cut(s) 239
LpnPI CCDG 5 cut(s) 142, 229, 243, 256, 275
LweI GCATC 1 cut(s) 276
MaeI CTAG 1 cut(s) 264
MaeII ACGT 1 cut(s) 139
MaeIII GTNAC 1 cut(s) 78
MboII GAAGA 4 cut(s) 100, 157, 160, 206
MhlI GDGCHC 1 cut(s) 236
MluCI AATT 2 cut(s) 20, 238
MmeI TCCRAC 1 cut(s) 122
MspR9I CCNGG 1 cut(s) 244
Mva1269I GAATGC 1 cut(s) 64
MvaI CCWGG 1 cut(s) 244
MwoI GCNNNNNNNGC 1 cut(s) 171
NlaIII CATG 2 cut(s) 13, 117
NsbI TGCGCA 2 cut(s) 164, 316
NspI RCATGY 2 cut(s) 13, 117
PciI ACATGT 1 cut(s) 9
PctI GAATGC 1 cut(s) 64
PfeI GAWTC 1 cut(s) 254
PflMI CCANNNNNTGG 1 cut(s) 243
PfoI TCCNGGA 1 cut(s) 242
PscI ACATGT 1 cut(s) 9
Psp124BI GAGCTC 1 cut(s) 236
Psp1406I AACGTT 1 cut(s) 139
Psp6I CCWGG 1 cut(s) 242
PspGI CCWGG 1 cut(s) 242
SacI GAGCTC 1 cut(s) 236
ScrFI CCNGG 1 cut(s) 244
SduI GDGCHC 1 cut(s) 236
SetI ASST 3 cut(s) 80, 142, 236
SfaNI GCATC 1 cut(s) 276
SfcI CTRYAG 1 cut(s) 296
Sse9I AATT 2 cut(s) 20, 238
SspMI CTAG 1 cut(s) 264
SstI GAGCTC 1 cut(s) 236
StyD4I CCNGG 1 cut(s) 242
TaaI ACNGT 1 cut(s) 47
TaiI ACGT 1 cut(s) 142
TaqII GACCGA 1 cut(s) 196
TasI AATT 2 cut(s) 20, 238
TfiI GAWTC 1 cut(s) 254
TscAI CASTG 2 cut(s) 52, 317
TspDTI ATGAA 2 cut(s) 110, 150
TspRI CASTG 2 cut(s) 52, 317
Van91I CCANNNNNTGG 1 cut(s) 243
XapI RAATTY 1 cut(s) 20
XceI RCATGY 2 cut(s) 13, 117
XspI CTAG 1 cut(s) 264
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.