pycom06g08990

Zinc finger MYM-type protein 1-like

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr6
Physical Location & Seq
Forward (+)
14212426 .. 14213096
671 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom06g08990.2

Sequence Viewer

Length: 522 bp
ATGAAAGAAAAGGCTAAGTATTTGACTTCAAAAGGCTCAAACGCTCCAAACATGGCATTAATCATCTCCCTACAAGTTCTAGATAAAAATCCTATGGCCCTCTATTTATTCTATAAAATCCTAAAAATCCTTCTTGACTTGGGAAACACGGCATCTGATTTACATGCCAGATTTGGAGTCGATTTCCCTTCTGGAAAATTCTGTAAAAATATGGAAAACGTAGCTTTATCTCTTATCTTTTCAGGCATATATCACACATCACTTGGAAAAATCAGGAAAGCCTTCAAATCTTCATTCTCCTACAGCTGCGCAATTCTAACGGGAAAACAACTTTTGTGGGATTCATTTGTGAAACTGGAATGTATGGCTCCATGGAAAATTATAAAATTTGGACATAACGATCTTCAGCCTCTTAGCTTCCTTCTCCAATTAGTCTTGCATCAAAACGCCTCCGGAAAGTCGAATTATCACCAAAAATGTCCTAAGTGGACAGATTGGCTGAAACAGAGAAAAGGAAAGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

174

Amino Acids

19.66

Weight (kDa)

9.78

Isoelectric Point (pI)

31.12

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0024648)

Species Orthologous Gene IDs
pyrus_communis pycom06g08980 pycom06g08990 pycom13g23300

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 383
Acc16I TGCGCA 1 cut(s) 310
AccIII TCCGGA 1 cut(s) 452
AcsI RAATTY 2 cut(s) 197, 386
AcuI CTGAAG 1 cut(s) 389
AgsI TTSAA 2 cut(s) 30, 286
AluBI AGCT 3 cut(s) 224, 306, 417
AluI AGCT 3 cut(s) 224, 306, 417
Aor13HI TCCGGA 1 cut(s) 452
AoxI GGCC 1 cut(s) 96
ApeKI GCWGC 1 cut(s) 306
ApoI RAATTY 2 cut(s) 197, 386
AseI ATTAAT 1 cut(s) 59
Asp700I GAANNNNTTC 1 cut(s) 281
AspLEI GCGC 1 cut(s) 311
AspS9I GGNCC 1 cut(s) 97
AsuHPI GGTGA 1 cut(s) 461
BbvI GCAGC 1 cut(s) 293
BceAI ACGGC 1 cut(s) 165
BfaI CTAG 1 cut(s) 80
BfmI CTRYAG 1 cut(s) 301
BisI GCNGC 1 cut(s) 307
BlsI GCNGC 1 cut(s) 308
BmgT120I GGNCC 1 cut(s) 97
BmiI GGNNCC 1 cut(s) 369
BmsI GCATC 2 cut(s) 161, 448
BsaBI GATNNNNATC 1 cut(s) 87
BsaJI CCNNGG 1 cut(s) 371
BsaWI WCCGGW 1 cut(s) 452
Bse1I ACTGG 1 cut(s) 360
Bse8I GATNNNNATC 1 cut(s) 87
BseAI TCCGGA 1 cut(s) 452
BseDI CCNNGG 1 cut(s) 371
BseJI GATNNNNATC 1 cut(s) 87
BseNI ACTGG 1 cut(s) 360
BseXI GCAGC 1 cut(s) 293
BshFI GGCC 1 cut(s) 98
BsiSI CCGG 1 cut(s) 453
BsnI GGCC 1 cut(s) 98
Bsp13I TCCGGA 1 cut(s) 452
Bsp143I GATC 1 cut(s) 400
Bsp19I CCATGG 1 cut(s) 371
BspANI GGCC 1 cut(s) 98
BspEI TCCGGA 1 cut(s) 452
BspLI GGNNCC 1 cut(s) 369
BsrI ACTGG 1 cut(s) 360
BssECI CCNNGG 1 cut(s) 371
BssMI GATC 1 cut(s) 400
BssT1I CCWWGG 1 cut(s) 371
BstDEI CTNAG 3 cut(s) 15, 413, 483
BstDSI CCRYGG 1 cut(s) 371
BstHHI GCGC 1 cut(s) 311
BstKTI GATC 1 cut(s) 403
BstMBI GATC 1 cut(s) 400
BstNSI RCATGY 1 cut(s) 167
BstSFI CTRYAG 1 cut(s) 301
BstV1I GCAGC 1 cut(s) 293
BsuRI GGCC 1 cut(s) 98
BtgI CCRYGG 1 cut(s) 371
CfoI GCGC 1 cut(s) 311
Cfr13I GGNCC 1 cut(s) 97
CspCI CAANNNNNGTGG 2 cut(s) 317, 352
CviAII CATG 3 cut(s) 52, 164, 372
DdeI CTNAG 3 cut(s) 15, 413, 483
DpnI GATC 1 cut(s) 402
DpnII GATC 1 cut(s) 400
Eco130I CCWWGG 1 cut(s) 371
Eco57I CTGAAG 1 cut(s) 389
EcoT14I CCWWGG 1 cut(s) 371
ErhI CCWWGG 1 cut(s) 371
FaeI CATG 3 cut(s) 55, 167, 375
FatI CATG 3 cut(s) 51, 163, 371
Fnu4HI GCNGC 1 cut(s) 307
Fsp4HI GCNGC 1 cut(s) 307
FspBI CTAG 1 cut(s) 80
FspI TGCGCA 1 cut(s) 310
GlaI GCGC 1 cut(s) 310
GluI GCNGC 1 cut(s) 307
HaeIII GGCC 1 cut(s) 98
HapII CCGG 1 cut(s) 453
HhaI GCGC 1 cut(s) 311
Hin1II CATG 3 cut(s) 55, 167, 375
Hin6I GCGC 1 cut(s) 309
HinP1I GCGC 1 cut(s) 309
HinfI GANTC 2 cut(s) 177, 341
HpaII CCGG 1 cut(s) 453
HphI GGTGA 1 cut(s) 461
Hpy166II GTNNAC 1 cut(s) 489
Hpy188I TCNGA 1 cut(s) 157
Hpy188III TCNNGA 5 cut(s) 80, 134, 192, 274, 453
Hpy8I GTNNAC 1 cut(s) 489
HpyAV CCTTC 4 cut(s) 140, 198, 292, 431
HpyCH4IV ACGT 1 cut(s) 219
HpyCH4V TGCA 1 cut(s) 439
HpyF3I CTNAG 3 cut(s) 15, 413, 483
HpySE526I ACGT 1 cut(s) 219
Hsp92II CATG 3 cut(s) 55, 167, 375
HspAI GCGC 1 cut(s) 309
Kpn2I TCCGGA 1 cut(s) 452
Kzo9I GATC 1 cut(s) 400
LmnI GCTCC 2 cut(s) 49, 373
LpnPI CCDG 6 cut(s) 177, 181, 228, 259, 341, 466
Lsp1109I GCAGC 1 cut(s) 293
LweI GCATC 2 cut(s) 161, 448
MaeI CTAG 1 cut(s) 80
MaeII ACGT 1 cut(s) 219
MalI GATC 1 cut(s) 402
MboI GATC 1 cut(s) 400
MboII GAAGA 2 cut(s) 282, 395
MluCI AATT 6 cut(s) 197, 312, 378, 386, 428, 463
MlyI GAGTC 1 cut(s) 186
MnlI CCTC 3 cut(s) 110, 420, 460
MroI TCCGGA 1 cut(s) 452
MroXI GAANNNNTTC 1 cut(s) 281
MseI TTAA 1 cut(s) 59
MspA1I CMGCKG 1 cut(s) 306
MspI CCGG 1 cut(s) 453
NcoI CCATGG 1 cut(s) 371
NdeII GATC 1 cut(s) 400
NlaIII CATG 3 cut(s) 55, 167, 375
NlaIV GGNNCC 1 cut(s) 369
NsbI TGCGCA 1 cut(s) 310
NspI RCATGY 1 cut(s) 167
PdmI GAANNNNTTC 1 cut(s) 281
PfeI GAWTC 1 cut(s) 341
PkrI GCNGC 1 cut(s) 308
PleI GAGTC 1 cut(s) 185
PpsI GAGTC 1 cut(s) 185
PshBI ATTAAT 1 cut(s) 59
PsiI TTATAA 1 cut(s) 383
PspN4I GGNNCC 1 cut(s) 369
PspPI GGNCC 1 cut(s) 97
PvuII CAGCTG 1 cut(s) 306
SaqAI TTAA 1 cut(s) 59
SatI GCNGC 1 cut(s) 307
Sau3AI GATC 1 cut(s) 400
Sau96I GGNCC 1 cut(s) 97
SchI GAGTC 1 cut(s) 186
SetI ASST 4 cut(s) 222, 226, 308, 419
SfaNI GCATC 2 cut(s) 161, 448
SfcI CTRYAG 1 cut(s) 301
Sse9I AATT 6 cut(s) 197, 312, 378, 386, 428, 463
SspMI CTAG 1 cut(s) 80
StyI CCWWGG 1 cut(s) 371
TaiI ACGT 1 cut(s) 222
TaqI TCGA 2 cut(s) 180, 461
TasI AATT 6 cut(s) 197, 312, 378, 386, 428, 463
TfiI GAWTC 1 cut(s) 341
Tru1I TTAA 1 cut(s) 59
Tru9I TTAA 1 cut(s) 59
TseI GCWGC 1 cut(s) 306
TspDTI ATGAA 3 cut(s) 17, 282, 333
VspI ATTAAT 1 cut(s) 59
XapI RAATTY 2 cut(s) 197, 386
XbaI TCTAGA 1 cut(s) 79
XceI RCATGY 1 cut(s) 167
XmnI GAANNNNTTC 1 cut(s) 281
XspI CTAG 1 cut(s) 80
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.