pycom06g13170

LRR-repeat protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr6
OG0028337
Physical Location & Seq
Reverse (-)
18227288 .. 18228066
779 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom06g13170.1

Sequence Viewer

Length: 666 bp
ATGTTATCGGGGCGGCATCCCCTCCACCTTCTTCATATCTCTGCTGAGAAACTTGAGCATGTAAATATAGCCTGCGTGACTCGAGAACTTAGGGGCAGGAGAATGGAAATTTCTGCTCCAAATCTTAGGTATTTGAAGCTGCATTGGAGAGGAATCAAGGTGATGAGCATTCGGAATCCAGGGGAATTTAATTGTTTGGAGAAAGCAGACCATGAAGTTGACTCCATTGAGCACGGAGTTGATATGGATAACAGCACATCTCGCGACCAGTCCCTCCTCTCTAGGGTTATTCAGACTGTTAAAGTTCTTACTTTACGCTACAGATGGACTATAACAACTCTCTCCAAGGAAGGTTGCACTGCACCACCATTAAATAATAATGTTCGGTGCTTGCGAATTAGTACTTGGATTTGTTACGAATTTGACAACAACCTAGTCCCAACGGTGGCCTCTCTTTTCAGAAGACTTCCTAACTTGAATACCTTGGAGATTTACGTATCCTATTTATTTGGCATAAAAAAACATAGATTTGATAGGAGGTATTGGCAACTCCAAAACCTAGATTTTATATCTCAGCTCAAGGATGTAACCTTAGAGGTTTCTGAAGGGTCTAACGACTCTAATCTAATCGAGTTTGCAAGTTGTCTTTCTGGAAAAAGGCTCTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
F-box FBD

Protein Analysis

222

Amino Acids

25.65

Weight (kDa)

9.08

Isoelectric Point (pI)

45.1

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0028337)

Species Orthologous Gene IDs
malus_domestica MD14G1157200.v1.1
pyrus_communis pycom06g13170

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 1 cut(s) 264
AciI CCGC 1 cut(s) 13
AcsI RAATTY 3 cut(s) 108, 185, 419
AcuI CTGAAG 1 cut(s) 624
AfaI GTAC 1 cut(s) 403
AfiI CCNNNNNNNGG 2 cut(s) 283, 445
AgsI TTSAA 2 cut(s) 136, 478
AjnI CCWGG 1 cut(s) 178
AjuI GAANNNNNNNTTGG 2 cut(s) 388, 420
AluBI AGCT 2 cut(s) 139, 577
AluI AGCT 2 cut(s) 139, 577
Alw21I GWGCWC 1 cut(s) 234
Ama87I CYCGRG 1 cut(s) 81
AoxI GGCC 1 cut(s) 447
ApeKI GCWGC 1 cut(s) 139
ApoI RAATTY 3 cut(s) 108, 185, 419
AsuHPI GGTGA 1 cut(s) 172
AvaI CYCGRG 1 cut(s) 81
BbsI GAAGAC 1 cut(s) 469
Bbv12I GWGCWC 1 cut(s) 234
BbvI GCAGC 1 cut(s) 126
BccI CCATC 1 cut(s) 318
BciT130I CCWGG 1 cut(s) 180
BciVI GTATCC 1 cut(s) 508
BfaI CTAG 3 cut(s) 282, 434, 560
BfmI CTRYAG 1 cut(s) 319
BfuI GTATCC 1 cut(s) 508
BisI GCNGC 2 cut(s) 14, 140
BlsI GCNGC 2 cut(s) 15, 141
BmcAI AGTACT 1 cut(s) 403
Bme1390I CCNGG 1 cut(s) 180
BmeT110I CYCGRG 1 cut(s) 81
BmrFI CCNGG 1 cut(s) 180
BmsI GCATC 1 cut(s) 25
BpiI GAAGAC 1 cut(s) 469
BpuEI CTTGAG 2 cut(s) 74, 563
BsaAI YACGTR 1 cut(s) 496
BsaJI CCNNGG 3 cut(s) 179, 345, 483
Bsc4I CCNNNNNNNGG 2 cut(s) 283, 445
Bse1I ACTGG 1 cut(s) 268
BseBI CCWGG 1 cut(s) 180
BseDI CCNNGG 3 cut(s) 179, 345, 483
BseGI GGATG 2 cut(s) 16, 589
BseLI CCNNNNNNNGG 2 cut(s) 283, 445
BseMII CTCAG 2 cut(s) 36, 587
BseNI ACTGG 1 cut(s) 268
BseRI GAGGAG 1 cut(s) 266
BseXI GCAGC 1 cut(s) 126
BsgI GTGCAG 1 cut(s) 345
Bsh1236I CGCG 1 cut(s) 264
BshFI GGCC 1 cut(s) 449
BsiHKAI GWGCWC 1 cut(s) 234
BsiHKCI CYCGRG 1 cut(s) 81
BslFI GGGAC 2 cut(s) 256, 422
BslI CCNNNNNNNGG 2 cut(s) 283, 445
BsmFI GGGAC 2 cut(s) 256, 422
BsmI GAATGC 1 cut(s) 168
BsnI GGCC 1 cut(s) 449
BsoBI CYCGRG 1 cut(s) 81
Bsp1286I GDGCHC 1 cut(s) 234
Bsp68I TCGCGA 1 cut(s) 264
BspACI CCGC 1 cut(s) 13
BspANI GGCC 1 cut(s) 449
BspCNI CTCAG 2 cut(s) 37, 586
BspFNI CGCG 1 cut(s) 264
BsrI ACTGG 1 cut(s) 268
BssECI CCNNGG 3 cut(s) 179, 345, 483
BssT1I CCWWGG 2 cut(s) 345, 483
Bst2UI CCWGG 1 cut(s) 180
Bst4CI ACNGT 2 cut(s) 298, 445
BstBAI YACGTR 1 cut(s) 496
BstC8I GCNNGC 2 cut(s) 73, 392
BstDEI CTNAG 5 cut(s) 45, 89, 125, 573, 592
BstF5I GGATG 2 cut(s) 16, 589
BstFNI CGCG 1 cut(s) 264
BstMWI GCNNNNNNNGC 1 cut(s) 261
BstNI CCWGG 1 cut(s) 180
BstNSI RCATGY 1 cut(s) 62
BstSCI CCNGG 1 cut(s) 178
BstSFI CTRYAG 1 cut(s) 319
BstSNI TACGTA 1 cut(s) 496
BstUI CGCG 1 cut(s) 264
BstV1I GCAGC 1 cut(s) 126
BstV2I GAAGAC 1 cut(s) 469
BsuI GTATCC 1 cut(s) 508
BsuRI GGCC 1 cut(s) 449
BtsCI GGATG 2 cut(s) 16, 589
BtsI GCAGTG 1 cut(s) 357
BtsIMutI CAGTG 1 cut(s) 357
BtuMI TCGCGA 1 cut(s) 264
Cac8I GCNNGC 2 cut(s) 73, 392
Csp6I GTAC 1 cut(s) 402
CviAII CATG 2 cut(s) 59, 212
CviJI RGCY 5 cut(s) 71, 139, 449, 577, 661
CviKI_1 RGCY 5 cut(s) 71, 139, 449, 577, 661
CviQI GTAC 1 cut(s) 402
DdeI CTNAG 5 cut(s) 45, 89, 125, 573, 592
Eco105I TACGTA 1 cut(s) 496
Eco130I CCWWGG 2 cut(s) 345, 483
Eco57I CTGAAG 1 cut(s) 624
Eco88I CYCGRG 1 cut(s) 81
EcoRII CCWGG 1 cut(s) 178
EcoT14I CCWWGG 2 cut(s) 345, 483
ErhI CCWWGG 2 cut(s) 345, 483
FaeI CATG 2 cut(s) 62, 215
FaiI YATR 9 cut(s) 36, 60, 68, 213, 245, 332, 515, 525, 569
FaqI GGGAC 2 cut(s) 256, 422
FatI CATG 2 cut(s) 58, 211
Fnu4HI GCNGC 2 cut(s) 14, 140
FokI GGATG 2 cut(s) 3, 596
Fsp4HI GCNGC 2 cut(s) 14, 140
FspBI CTAG 3 cut(s) 282, 434, 560
GluI GCNGC 2 cut(s) 14, 140
HaeIII GGCC 1 cut(s) 449
Hin1II CATG 2 cut(s) 62, 215
HincII GTYRAC 1 cut(s) 220
HindII GTYRAC 1 cut(s) 220
HinfI GANTC 5 cut(s) 79, 153, 175, 221, 617
HphI GGTGA 1 cut(s) 172
Hpy166II GTNNAC 1 cut(s) 220
Hpy188I TCNGA 4 cut(s) 174, 294, 461, 604
Hpy188III TCNNGA 3 cut(s) 83, 263, 651
Hpy8I GTNNAC 1 cut(s) 220
HpyAV CCTTC 3 cut(s) 38, 344, 599
HpyCH4III ACNGT 2 cut(s) 298, 445
HpyCH4IV ACGT 1 cut(s) 495
HpyCH4V TGCA 4 cut(s) 142, 357, 362, 638
HpyF10VI GCNNNNNNNGC 1 cut(s) 261
HpyF3I CTNAG 5 cut(s) 45, 89, 125, 573, 592
HpySE526I ACGT 1 cut(s) 495
Hsp92II CATG 2 cut(s) 62, 215
LmnI GCTCC 1 cut(s) 121
LpnPI CCDG 6 cut(s) 82, 85, 165, 192, 281, 636
Lsp1109I GCAGC 1 cut(s) 126
LweI GCATC 1 cut(s) 25
MaeI CTAG 3 cut(s) 282, 434, 560
MaeII ACGT 1 cut(s) 495
MaeIII GTNAC 3 cut(s) 76, 413, 586
MboII GAAGA 2 cut(s) 23, 474
MhlI GDGCHC 1 cut(s) 234
MluCI AATT 5 cut(s) 108, 185, 190, 396, 419
MlyI GAGTC 3 cut(s) 73, 215, 611
MnlI CCTC 7 cut(s) 32, 143, 284, 287, 460, 531, 589
MseI TTAA 3 cut(s) 189, 300, 371
MspR9I CCNGG 1 cut(s) 180
Mva1269I GAATGC 1 cut(s) 168
MvaI CCWGG 1 cut(s) 180
MvnI CGCG 1 cut(s) 264
MwoI GCNNNNNNNGC 1 cut(s) 261
NlaIII CATG 2 cut(s) 62, 215
NmuCI GTSAC 1 cut(s) 76
NruI TCGCGA 1 cut(s) 264
NspI RCATGY 1 cut(s) 62
PaeR7I CTCGAG 1 cut(s) 81
PcsI WCGNNNNNNNCGW 1 cut(s) 391
PctI GAATGC 1 cut(s) 168
PfeI GAWTC 2 cut(s) 153, 175
PkrI GCNGC 2 cut(s) 15, 141
PleI GAGTC 3 cut(s) 73, 215, 611
PpsI GAGTC 3 cut(s) 73, 215, 611
Ppu21I YACGTR 1 cut(s) 496
Psp6I CCWGG 1 cut(s) 178
PspGI CCWGG 1 cut(s) 178
RruI TCGCGA 1 cut(s) 264
RsaI GTAC 1 cut(s) 403
RsaNI GTAC 1 cut(s) 402
SaqAI TTAA 3 cut(s) 189, 300, 371
SatI GCNGC 2 cut(s) 14, 140
ScaI AGTACT 1 cut(s) 403
SchI GAGTC 3 cut(s) 73, 215, 611
ScrFI CCNGG 1 cut(s) 180
SduI GDGCHC 1 cut(s) 234
SfaNI GCATC 1 cut(s) 25
SfcI CTRYAG 1 cut(s) 319
Sfr274I CTCGAG 1 cut(s) 81
SlaI CTCGAG 1 cut(s) 81
SmlI CTYRAG 3 cut(s) 53, 81, 578
SmoI CTYRAG 3 cut(s) 53, 81, 578
SnaBI TACGTA 1 cut(s) 496
Sse9I AATT 5 cut(s) 108, 185, 190, 396, 419
SsiI CCGC 1 cut(s) 13
SspMI CTAG 3 cut(s) 282, 434, 560
StyD4I CCNGG 1 cut(s) 178
StyI CCWWGG 2 cut(s) 345, 483
TaaI ACNGT 2 cut(s) 298, 445
TaiI ACGT 1 cut(s) 498
TaqI TCGA 2 cut(s) 82, 630
TasI AATT 5 cut(s) 108, 185, 190, 396, 419
TatI WGTACW 1 cut(s) 401
TauI GCSGC 1 cut(s) 16
TfiI GAWTC 2 cut(s) 153, 175
Tru1I TTAA 3 cut(s) 189, 300, 371
Tru9I TTAA 3 cut(s) 189, 300, 371
TscAI CASTG 1 cut(s) 364
TseFI GTSAC 1 cut(s) 76
TseI GCWGC 1 cut(s) 139
Tsp45I GTSAC 1 cut(s) 76
TspDTI ATGAA 2 cut(s) 23, 228
TspGWI ACGGA 1 cut(s) 249
TspRI CASTG 1 cut(s) 364
XapI RAATTY 3 cut(s) 108, 185, 419
XceI RCATGY 1 cut(s) 62
XhoI CTCGAG 1 cut(s) 81
XspI CTAG 3 cut(s) 282, 434, 560
ZrmI AGTACT 1 cut(s) 403
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.