pycom06g15110

Galactinol--sucrose galactosyltransferase-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr6
OG0029068
Physical Location & Seq
Reverse (-)
19708830 .. 19710472
1643 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 1089 bp
ATGTGGACAAAATTTTGGATGTCTAACCAATTTCTTCGCATTGATACAAATGTCATAGGAGATGATTTTTGGTCTGAGACGACGGCGGAAGCAGATGGAACATATTGGCTGCAAGGGTGTCACACGGTGCACTGCGCCTACAATAGCCTTTGGATGGGCAACATCATACAGCCAGATTGGGACATGTTTCAGTCTACTCACCCTTGTGCTGAATTCCATGCTGCGTCAAGAGCTATATCGGGAGGACCAATCTACATTAGTGACTCTGTTGGAAAGCACAACTTCAAGCTTCTTAAGAGCCTGGTGCTGCCTGATGGGTCCGTACTGCGATGCCAACACTATGCCCTTCCTGCTAGGGATTGCCTATTTGAAGACCCTTTGCATGATGGCAAAACAATGCTCAAAATATGGAACCTCAACAAAGTAAGAAACTCTTTTAAAAGCACGGGAAGTGATTTTGATGCCCTTTTTAGTTTTAGTGCTAACTCAACGTTTTTCGACATGTACTTGCACCAGTGTACTGGAGTTTTGGGTGCTTTTAATTGTCAAGGCGGAGGATGGTGCTCGAAATCCAGGCGGAACAAAATCGCCCCCGACTGCTCAAAGTCTGTGACCTGTTTTGCTAGTCCAAAAGACGTGGAATGGAATCAAGGGAAGAACCCCATTTCAGTACAAGGAGTGACCATATTTGCTGTGTACACGTTCCAGCAGAACAAGCTGAAGTTCTTGAAGCCATCAGAGAAGGTAGAGATTCCACTTGAGCCTTTTAGTTTTGAGCTCCTCACTGTTTCTCCGGTGAGGGTCTTGCGGAAGAAACTGATCCAATTTGCTCCGATTGGATTGGTCAACATGCTCAACACTGGCGGTGCAATTGATTCAGTAGAAGCTGAGGAGCATGAGGGGAACCCTAGTTTGGTGAGAATTGGAGTGAAGGGTTGTGGAGAAATGAGAATGTTTGCTTCAGAAAGGCCAACTGCTTGTGAGATCGATGGAGATGGAGTGAAGTTTGATTATTTTGATAAGATGGTCAGAGTCCAAGTGCCATGGCTTACTTCTTCAAGATCAGTTCTAGTTGACTACTTGTTTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00052 map00052
Pfam Domains
Protein Families
Raffinose_syn

Protein Analysis

363

Amino Acids

40.72

Weight (kDa)

6.5

Isoelectric Point (pI)

37.97

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Raffinose_syn PF05691 18 - 142 9.3e-71 Raffinose synthase or seed imbibition protein Sip1
Raffinose_syn PF05691 170 - 345 1.4e-48 Raffinose synthase or seed imbibition protein Sip1
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0029068)

Species Orthologous Gene IDs
prunus_persica Prupe.5G169000_v2.0.a1
pyrus_communis pycom06g15110

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 194
AciI CCGC 5 cut(s) 86, 552, 577, 808, 864
AclI AACGTT 1 cut(s) 491
AclWI GGATC 1 cut(s) 814
AcsI RAATTY 2 cut(s) 11, 212
AcuI CTGAAG 2 cut(s) 740, 945
AdeI CACNNNGTG 1 cut(s) 127
AfaI GTAC 5 cut(s) 324, 506, 520, 672, 698
AfiI CCNNNNNNNGG 2 cut(s) 154, 913
AflII CTTAAG 1 cut(s) 293
AflIII ACRYGT 3 cut(s) 183, 501, 699
AgsI TTSAA 4 cut(s) 286, 371, 730, 1059
AjiI CACGTC 1 cut(s) 637
AjnI CCWGG 2 cut(s) 300, 572
AjuI GAANNNNNNNTTGG 2 cut(s) 896, 928
AleI CACNNNNGTG 1 cut(s) 204
AluBI AGCT 5 cut(s) 233, 289, 718, 778, 887
AluI AGCT 5 cut(s) 233, 289, 718, 778, 887
Alw21I GWGCWC 3 cut(s) 132, 566, 780
Alw26I GTCTC 1 cut(s) 71
Alw44I GTGCAC 1 cut(s) 128
AlwI GGATC 1 cut(s) 814
AoxI GGCC 1 cut(s) 968
ApaLI GTGCAC 1 cut(s) 128
ApeKI GCWGC 3 cut(s) 109, 221, 307
ApoI RAATTY 2 cut(s) 11, 212
AspLEI GCGC 1 cut(s) 137
AspS9I GGNCC 2 cut(s) 245, 318
AsuHPI GGTGA 3 cut(s) 191, 808, 928
AvaII GGWCC 2 cut(s) 245, 318
BaeGI GKGCMC 1 cut(s) 132
BaeI ACNNNNGTAYC 2 cut(s) 36, 69
BanII GRGCYC 1 cut(s) 780
BbsI GAAGAC 1 cut(s) 378
Bbv12I GWGCWC 3 cut(s) 132, 566, 780
BbvCI CCTCAGC 1 cut(s) 888
BbvI GCAGC 3 cut(s) 96, 208, 294
BccI CCATC 9 cut(s) 89, 148, 308, 380, 552, 742, 983, 989, 1018
BceAI ACGGC 1 cut(s) 99
BciT130I CCWGG 2 cut(s) 302, 574
BcoDI GTCTC 1 cut(s) 71
BfaI CTAG 4 cut(s) 354, 624, 909, 1070
BfrI CTTAAG 1 cut(s) 293
BisI GCNGC 3 cut(s) 110, 222, 308
BlsI GCNGC 3 cut(s) 111, 223, 309
Bme1390I CCNGG 2 cut(s) 302, 574
Bme18I GGWCC 2 cut(s) 245, 318
BmgBI CACGTC 1 cut(s) 637
BmgT120I GGNCC 2 cut(s) 245, 318
BmiI GGNNCC 3 cut(s) 319, 413, 905
BmrFI CCNGG 2 cut(s) 302, 574
BmsI GCATC 2 cut(s) 320, 451
BpiI GAAGAC 1 cut(s) 378
BpmI CTGGAG 1 cut(s) 543
Bpu10I CCTNAGC 1 cut(s) 888
BpuEI CTTGAG 1 cut(s) 779
Bsa29I ATCGAT 1 cut(s) 987
BsaJI CCNNGG 1 cut(s) 1043
BsaWI WCCGGW 1 cut(s) 793
BsaXI ACNNNNNCTCC 4 cut(s) 775, 805, 984, 1014
Bsc4I CCNNNNNNNGG 2 cut(s) 154, 913
Bse1I ACTGG 3 cut(s) 514, 526, 865
BseBI CCWGG 2 cut(s) 302, 574
BseCI ATCGAT 1 cut(s) 987
BseDI CCNNGG 1 cut(s) 1043
BseGI GGATG 3 cut(s) 24, 159, 563
BseLI CCNNNNNNNGG 2 cut(s) 154, 913
BseMII CTCAG 2 cut(s) 66, 879
BseNI ACTGG 3 cut(s) 514, 526, 865
BseRI GAGGAG 2 cut(s) 770, 905
BseSI GKGCMC 1 cut(s) 132
BseXI GCAGC 3 cut(s) 96, 208, 294
BshFI GGCC 1 cut(s) 970
BshVI ATCGAT 1 cut(s) 987
BsiHKAI GWGCWC 3 cut(s) 132, 566, 780
BsiSI CCGG 1 cut(s) 794
BslFI GGGAC 1 cut(s) 194
BslI CCNNNNNNNGG 2 cut(s) 154, 913
BsmAI GTCTC 1 cut(s) 71
BsmBI CGTCTC 1 cut(s) 71
BsmFI GGGAC 1 cut(s) 194
BsnI GGCC 1 cut(s) 970
Bsp1286I GDGCHC 3 cut(s) 132, 566, 780
Bsp1407I TGTACA 1 cut(s) 696
Bsp143I GATC 3 cut(s) 819, 984, 1061
Bsp19I CCATGG 1 cut(s) 1043
BspACI CCGC 5 cut(s) 86, 552, 577, 808, 864
BspANI GGCC 1 cut(s) 970
BspCNI CTCAG 2 cut(s) 67, 880
BspDI ATCGAT 1 cut(s) 987
BspLI GGNNCC 3 cut(s) 319, 413, 905
BspPI GGATC 1 cut(s) 814
BspTI CTTAAG 1 cut(s) 293
BsrGI TGTACA 1 cut(s) 696
BsrI ACTGG 3 cut(s) 514, 526, 865
BssECI CCNNGG 1 cut(s) 1043
BssMI GATC 3 cut(s) 819, 984, 1061
BssT1I CCWWGG 1 cut(s) 1043
Bst2UI CCWGG 2 cut(s) 302, 574
Bst4CI ACNGT 2 cut(s) 127, 787
BstAFI CTTAAG 1 cut(s) 293
BstAUI TGTACA 1 cut(s) 696
BstDEI CTNAG 2 cut(s) 75, 888
BstDSI CCRYGG 1 cut(s) 1043
BstF5I GGATG 3 cut(s) 24, 159, 563
BstHHI GCGC 1 cut(s) 137
BstKTI GATC 3 cut(s) 822, 987, 1064
BstMAI GTCTC 1 cut(s) 71
BstMBI GATC 3 cut(s) 819, 984, 1061
BstMWI GCNNNNNNNGC 3 cut(s) 230, 350, 715
BstNI CCWGG 2 cut(s) 302, 574
BstNSI RCATGY 3 cut(s) 187, 505, 853
BstSCI CCNGG 2 cut(s) 300, 572
BstSLI GKGCMC 1 cut(s) 132
BstV1I GCAGC 3 cut(s) 96, 208, 294
BstV2I GAAGAC 1 cut(s) 378
BstXI CCANNNNNNTGG 1 cut(s) 521
Bsu15I ATCGAT 1 cut(s) 987
BsuRI GGCC 1 cut(s) 970
BsuTUI ATCGAT 1 cut(s) 987
BtgI CCRYGG 1 cut(s) 1043
BtgZI GCGATG 1 cut(s) 343
BtrI CACGTC 1 cut(s) 637
BtsCI GGATG 3 cut(s) 24, 159, 563
BtsI GCAGTG 1 cut(s) 130
BtsIMutI CAGTG 4 cut(s) 130, 521, 783, 858
CfoI GCGC 1 cut(s) 137
Cfr13I GGNCC 2 cut(s) 245, 318
ClaI ATCGAT 1 cut(s) 987
CseI GACGC 1 cut(s) 213
Csp6I GTAC 5 cut(s) 323, 505, 519, 671, 697
CspCI CAANNNNNGTGG 2 cut(s) 618, 653
CviAII CATG 7 cut(s) 184, 218, 383, 502, 850, 896, 1044
CviQI GTAC 5 cut(s) 323, 505, 519, 671, 697
DdeI CTNAG 2 cut(s) 75, 888
DpnI GATC 3 cut(s) 821, 986, 1063
DpnII GATC 3 cut(s) 819, 984, 1061
DraI TTTAAA 1 cut(s) 439
DraIII CACNNNGTG 1 cut(s) 127
EciI GGCGGA 3 cut(s) 101, 567, 592
Ecl136II GAGCTC 1 cut(s) 778
Eco130I CCWWGG 1 cut(s) 1043
Eco24I GRGCYC 1 cut(s) 780
Eco47I GGWCC 2 cut(s) 245, 318
Eco53kI GAGCTC 1 cut(s) 778
Eco57I CTGAAG 2 cut(s) 740, 945
EcoICRI GAGCTC 1 cut(s) 778
EcoRI GAATTC 1 cut(s) 212
EcoRII CCWGG 2 cut(s) 300, 572
EcoT14I CCWWGG 1 cut(s) 1043
EcoT38I GRGCYC 1 cut(s) 780
ErhI CCWWGG 1 cut(s) 1043
Esp3I CGTCTC 1 cut(s) 71
FaeI CATG 7 cut(s) 187, 221, 386, 505, 853, 899, 1047
FalI AAGNNNNNCTT 4 cut(s) 266, 298, 418, 450
FaqI GGGAC 1 cut(s) 194
FatI CATG 7 cut(s) 183, 217, 382, 501, 849, 895, 1043
FblI GTMKAC 1 cut(s) 194
Fnu4HI GCNGC 3 cut(s) 110, 222, 308
FokI GGATG 3 cut(s) 31, 166, 570
FriOI GRGCYC 1 cut(s) 780
Fsp4HI GCNGC 3 cut(s) 110, 222, 308
FspBI CTAG 4 cut(s) 354, 624, 909, 1070
GlaI GCGC 1 cut(s) 136
GluI GCNGC 3 cut(s) 110, 222, 308
GsuI CTGGAG 1 cut(s) 543
HaeIII GGCC 1 cut(s) 970
HapII CCGG 1 cut(s) 794
HgaI GACGC 1 cut(s) 213
HhaI GCGC 1 cut(s) 137
Hin1II CATG 7 cut(s) 187, 221, 386, 505, 853, 899, 1047
Hin6I GCGC 1 cut(s) 135
HinP1I GCGC 1 cut(s) 135
HincII GTYRAC 2 cut(s) 847, 1075
HindII GTYRAC 2 cut(s) 847, 1075
HindIII AAGCTT 1 cut(s) 287
HinfI GANTC 5 cut(s) 263, 646, 751, 875, 1032
HpaII CCGG 1 cut(s) 794
HphI GGTGA 3 cut(s) 191, 808, 928
Hpy166II GTNNAC 8 cut(s) 6, 130, 195, 519, 697, 699, 847, 1075
Hpy188I TCNGA 5 cut(s) 76, 739, 834, 964, 1031
Hpy188III TCNNGA 4 cut(s) 228, 240, 727, 1059
Hpy8I GTNNAC 8 cut(s) 6, 130, 195, 519, 697, 699, 847, 1075
Hpy99I CGWCG 1 cut(s) 85
HpyAV CCTTC 3 cut(s) 356, 736, 925
HpyCH4III ACNGT 2 cut(s) 127, 787
HpyCH4IV ACGT 3 cut(s) 491, 636, 701
HpyCH4V TGCA 5 cut(s) 112, 130, 382, 511, 869
HpyF10VI GCNNNNNNNGC 3 cut(s) 230, 350, 715
HpyF3I CTNAG 2 cut(s) 75, 888
HpySE526I ACGT 3 cut(s) 491, 636, 701
Hsp92II CATG 7 cut(s) 187, 221, 386, 505, 853, 899, 1047
HspAI GCGC 1 cut(s) 135
Kzo9I GATC 3 cut(s) 819, 984, 1061
LmnI GCTCC 3 cut(s) 783, 835, 892
Lsp1109I GCAGC 3 cut(s) 96, 208, 294
LweI GCATC 2 cut(s) 320, 451
MaeI CTAG 4 cut(s) 354, 624, 909, 1070
MaeII ACGT 3 cut(s) 491, 636, 701
MaeIII GTNAC 4 cut(s) 119, 260, 610, 679
MalI GATC 3 cut(s) 821, 986, 1063
MboI GATC 3 cut(s) 819, 984, 1061
MboII GAAGA 5 cut(s) 26, 383, 667, 823, 1047
MfeI CAATTG 1 cut(s) 870
MhlI GDGCHC 3 cut(s) 132, 566, 780
MluCI AATT 7 cut(s) 11, 29, 212, 541, 824, 870, 921
MlyI GAGTC 2 cut(s) 257, 1041
MmeI TCCRAC 1 cut(s) 250
MnlI CCTC 7 cut(s) 236, 425, 548, 791, 792, 883, 892
MseI TTAA 3 cut(s) 294, 438, 540
MslI CAYNNNNRTG 1 cut(s) 204
MspCI CTTAAG 1 cut(s) 293
MspI CCGG 1 cut(s) 794
MspR9I CCNGG 2 cut(s) 302, 574
MunI CAATTG 1 cut(s) 870
MvaI CCWGG 2 cut(s) 302, 574
MwoI GCNNNNNNNGC 3 cut(s) 230, 350, 715
NcoI CCATGG 1 cut(s) 1043
NdeII GATC 3 cut(s) 819, 984, 1061
NlaIII CATG 7 cut(s) 187, 221, 386, 505, 853, 899, 1047
NlaIV GGNNCC 3 cut(s) 319, 413, 905
NmuCI GTSAC 4 cut(s) 119, 260, 610, 679
NspI RCATGY 3 cut(s) 187, 505, 853
OliI CACNNNNGTG 1 cut(s) 204
PciI ACATGT 2 cut(s) 183, 501
PfeI GAWTC 3 cut(s) 646, 751, 875
PkrI GCNGC 3 cut(s) 111, 223, 309
PleI GAGTC 2 cut(s) 257, 1040
PpsI GAGTC 2 cut(s) 257, 1040
PscI ACATGT 2 cut(s) 183, 501
Psp124BI GAGCTC 1 cut(s) 780
Psp1406I AACGTT 1 cut(s) 491
Psp6I CCWGG 2 cut(s) 300, 572
PspGI CCWGG 2 cut(s) 300, 572
PspN4I GGNNCC 3 cut(s) 319, 413, 905
PspPI GGNCC 2 cut(s) 245, 318
RsaI GTAC 5 cut(s) 324, 506, 520, 672, 698
RsaNI GTAC 5 cut(s) 323, 505, 519, 671, 697
RseI CAYNNNNRTG 1 cut(s) 204
SacI GAGCTC 1 cut(s) 780
SaqAI TTAA 3 cut(s) 294, 438, 540
SatI GCNGC 3 cut(s) 110, 222, 308
Sau3AI GATC 3 cut(s) 819, 984, 1061
Sau96I GGNCC 2 cut(s) 245, 318
SchI GAGTC 2 cut(s) 257, 1041
ScrFI CCNGG 2 cut(s) 302, 574
SduI GDGCHC 3 cut(s) 132, 566, 780
SfaNI GCATC 2 cut(s) 320, 451
SinI GGWCC 2 cut(s) 245, 318
SmiMI CAYNNNNRTG 1 cut(s) 204
SmlI CTYRAG 2 cut(s) 293, 758
SmoI CTYRAG 2 cut(s) 293, 758
Sse9I AATT 7 cut(s) 11, 29, 212, 541, 824, 870, 921
SsiI CCGC 5 cut(s) 86, 552, 577, 808, 864
SspMI CTAG 4 cut(s) 354, 624, 909, 1070
SstI GAGCTC 1 cut(s) 780
StyD4I CCNGG 2 cut(s) 300, 572
StyI CCWWGG 1 cut(s) 1043
TaaI ACNGT 2 cut(s) 127, 787
TaiI ACGT 3 cut(s) 494, 639, 704
TaqI TCGA 3 cut(s) 498, 566, 987
TasI AATT 7 cut(s) 11, 29, 212, 541, 824, 870, 921
TatI WGTACW 4 cut(s) 504, 518, 670, 696
TfiI GAWTC 3 cut(s) 646, 751, 875
Tru1I TTAA 3 cut(s) 294, 438, 540
Tru9I TTAA 3 cut(s) 294, 438, 540
TscAI CASTG 4 cut(s) 137, 521, 790, 865
TseFI GTSAC 4 cut(s) 119, 260, 610, 679
TseI GCWGC 3 cut(s) 109, 221, 307
Tsp45I GTSAC 4 cut(s) 119, 260, 610, 679
TspGWI ACGGA 1 cut(s) 310
TspRI CASTG 4 cut(s) 137, 521, 790, 865
Vha464I CTTAAG 1 cut(s) 293
VneI GTGCAC 1 cut(s) 128
VpaK11BI GGWCC 2 cut(s) 245, 318
XapI RAATTY 2 cut(s) 11, 212
XceI RCATGY 3 cut(s) 187, 505, 853
XmiI GTMKAC 1 cut(s) 194
XspI CTAG 4 cut(s) 354, 624, 909, 1070
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.