Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr6

Orthogroup ID

OG0029309

Physical Location & Seq

Genomic Coordinates Reverse (-)

23814119 .. 23814886

Gene Structure 768 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom06g20950.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 423 bp

ATGGCAATGGCCGGTTTTCTGCCTTTCAGTGCTATATACATTGAACTGTACTACATATTTGCCAGTGTATGGGGTCACAGGATTTACACCATTTACAGCATCTTGTTTATTGTGTTTATCATTCTTCTGATCGTTACTGCTTTCATTACTGTGGCATTGACATATTTCCAACTTGCTGCCGAGGACCATGAGTGGTGGTGGAGGTCTTTCCTCTGTGGTGGGTCTACTGGACTATTTATCTATGCGTATTGTTTGTATTACTACTACGCACGCTCGGATATGTCAGGATTCATGCAAACGTCGTTCTTCTTTGGTTACATGGCATGCATCTGCTACGGTTTCTTCCTCATGCTTGGGACTGTAGGCTTCCGTGCAGCTTTGCTTTTTGTCCGTCACATATACCGGTCCATCAAGTGTGAATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0002790 GO:0003674 GO:0004888 GO:0005575 GO:0005623 GO:0005886 GO:0005887 GO:0006810 GO:0006897 GO:0006909 GO:0007154 GO:0007155 GO:0007165 GO:0008104 GO:0008150 GO:0008283 GO:0009306 GO:0009987 GO:0015031 GO:0015833 GO:0016020 GO:0016021 GO:0016192 GO:0022610 GO:0023052 GO:0030587 GO:0031224 GO:0031226 GO:0031589 GO:0032502 GO:0032940 GO:0033036 GO:0033299 GO:0034613 GO:0038023 GO:0042886 GO:0044425 GO:0044459 GO:0044464 GO:0045184 GO:0046903 GO:0048856 GO:0050789 GO:0050794 GO:0050896 GO:0051179 GO:0051234 GO:0051641 GO:0051703 GO:0051704 GO:0051716 GO:0060089 GO:0065007 GO:0070727 GO:0071702 GO:0071705 GO:0071944 GO:0072657 GO:0090702 GO:0098657 GO:0099120

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

EMP70

Protein Analysis

141

Amino Acids

16.45

Weight (kDa)

7.62

Isoelectric Point (pI)

45.48

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0029309)

Species	Orthologous Gene IDs
pyrus_communis	pycom06g20950 pycom14g20330

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	69
AccI	GTMKAC	1 cut(s)	224
AcoI	YGGCCR	1 cut(s)	9
AfaI	GTAC	1 cut(s)	50
AfiI	CCNNNNNNNGG	1 cut(s)	69
AgeI	ACCGGT	1 cut(s)	402
AgsI	TTSAA	1 cut(s)	44
AluBI	AGCT	1 cut(s)	377
AluI	AGCT	1 cut(s)	377
AoxI	GGCC	1 cut(s)	9
ApeKI	GCWGC	2 cut(s)	176, 374
AsiGI	ACCGGT	1 cut(s)	402
AspS9I	GGNCC	2 cut(s)	184, 405
AvaII	GGWCC	2 cut(s)	184, 405
BbvI	GCAGC	2 cut(s)	163, 386
BccI	CCATC	1 cut(s)	416
BfmI	CTRYAG	1 cut(s)	360
BisI	GCNGC	2 cut(s)	177, 375
BlsI	GCNGC	2 cut(s)	178, 376
Bme18I	GGWCC	2 cut(s)	184, 405
BmgT120I	GGNCC	2 cut(s)	184, 405
BmsI	GCATC	2 cut(s)	108, 336
BsaJI	CCNNGG	1 cut(s)	180
BsaWI	WCCGGW	1 cut(s)	402
Bsc4I	CCNNNNNNNGG	1 cut(s)	69
Bse118I	RCCGGY	2 cut(s)	11, 402
Bse1I	ACTGG	2 cut(s)	63, 232
Bse3DI	GCAATG	1 cut(s)	12
BseDI	CCNNGG	1 cut(s)	180
BseLI	CCNNNNNNNGG	1 cut(s)	69
BseMI	GCAATG	1 cut(s)	12
BseNI	ACTGG	2 cut(s)	63, 232
BseXI	GCAGC	2 cut(s)	163, 386
BsgI	GTGCAG	1 cut(s)	393
BshFI	GGCC	1 cut(s)	11
BshTI	ACCGGT	1 cut(s)	402
BsiSI	CCGG	2 cut(s)	12, 403
BslFI	GGGAC	1 cut(s)	370
BslI	CCNNNNNNNGG	1 cut(s)	69
BsmFI	GGGAC	1 cut(s)	370
BsnI	GGCC	1 cut(s)	11
Bsp143I	GATC	1 cut(s)	129
BspANI	GGCC	1 cut(s)	11
BsrDI	GCAATG	1 cut(s)	12
BsrFI	RCCGGY	2 cut(s)	11, 402
BsrI	ACTGG	2 cut(s)	63, 232
BssAI	RCCGGY	2 cut(s)	11, 402
BssECI	CCNNGG	1 cut(s)	180
BssMI	GATC	1 cut(s)	129
Bst4CI	ACNGT	4 cut(s)	48, 151, 338, 361
BstC8I	GCNNGC	2 cut(s)	271, 325
BstKTI	GATC	1 cut(s)	132
BstMBI	GATC	1 cut(s)	129
BstNSI	RCATGY	1 cut(s)	327
BstSFI	CTRYAG	1 cut(s)	360
BstV1I	GCAGC	2 cut(s)	163, 386
BsuRI	GGCC	1 cut(s)	11
BtsIMutI	CAGTG	2 cut(s)	34, 70
Cac8I	GCNNGC	2 cut(s)	271, 325
Cfr10I	RCCGGY	2 cut(s)	11, 402
Cfr13I	GGNCC	2 cut(s)	184, 405
Csp6I	GTAC	1 cut(s)	49
CspAI	ACCGGT	1 cut(s)	402
CviAII	CATG	5 cut(s)	188, 292, 319, 324, 349
CviJI	RGCY	3 cut(s)	11, 366, 377
CviKI_1	RGCY	3 cut(s)	11, 366, 377
CviQI	GTAC	1 cut(s)	49
DpnI	GATC	1 cut(s)	131
DpnII	GATC	1 cut(s)	129
EaeI	YGGCCR	1 cut(s)	9
Eco47I	GGWCC	2 cut(s)	184, 405
EcoT22I	ATGCAT	1 cut(s)	329
FaeI	CATG	5 cut(s)	191, 295, 322, 327, 352
FaqI	GGGAC	1 cut(s)	370
FatI	CATG	5 cut(s)	187, 291, 318, 323, 348
FblI	GTMKAC	1 cut(s)	224
Fnu4HI	GCNGC	2 cut(s)	177, 375
Fsp4HI	GCNGC	2 cut(s)	177, 375
GluI	GCNGC	2 cut(s)	177, 375
HaeIII	GGCC	1 cut(s)	11
HapII	CCGG	2 cut(s)	12, 403
Hin1II	CATG	5 cut(s)	191, 295, 322, 327, 352
HinfI	GANTC	1 cut(s)	288
HpaII	CCGG	2 cut(s)	12, 403
Hpy166II	GTNNAC	1 cut(s)	225
Hpy188I	TCNGA	2 cut(s)	129, 277
Hpy188III	TCNNGA	1 cut(s)	285
Hpy8I	GTNNAC	1 cut(s)	225
Hpy99I	CGWCG	1 cut(s)	304
HpyCH4III	ACNGT	4 cut(s)	48, 151, 338, 361
HpyCH4IV	ACGT	1 cut(s)	299
HpyCH4V	TGCA	3 cut(s)	295, 327, 374
HpySE526I	ACGT	1 cut(s)	299
Hsp92II	CATG	5 cut(s)	191, 295, 322, 327, 352
Kzo9I	GATC	1 cut(s)	129
LpnPI	CCDG	6 cut(s)	25, 64, 76, 213, 270, 416
Lsp1109I	GCAGC	2 cut(s)	163, 386
LweI	GCATC	2 cut(s)	108, 336
MaeII	ACGT	1 cut(s)	299
MaeIII	GTNAC	4 cut(s)	74, 133, 314, 392
MalI	GATC	1 cut(s)	131
MboI	GATC	1 cut(s)	129
MboII	GAAGA	3 cut(s)	116, 298, 334
MmeI	TCCRAC	1 cut(s)	193
MnlI	CCTC	4 cut(s)	175, 195, 221, 356
Mph1103I	ATGCAT	1 cut(s)	329
MslI	CAYNNNNRTG	1 cut(s)	149
MspI	CCGG	2 cut(s)	12, 403
NdeII	GATC	1 cut(s)	129
NlaIII	CATG	5 cut(s)	191, 295, 322, 327, 352
NmeAIII	GCCGAG	1 cut(s)	205
NmuCI	GTSAC	2 cut(s)	74, 392
NsiI	ATGCAT	1 cut(s)	329
NspI	RCATGY	1 cut(s)	327
PaeI	GCATGC	1 cut(s)	327
PfeI	GAWTC	1 cut(s)	288
PflMI	CCANNNNNTGG	1 cut(s)	69
PinAI	ACCGGT	1 cut(s)	402
PkrI	GCNGC	2 cut(s)	178, 376
PspPI	GGNCC	2 cut(s)	184, 405
RsaI	GTAC	1 cut(s)	50
RsaNI	GTAC	1 cut(s)	49
RseI	CAYNNNNRTG	1 cut(s)	149
SatI	GCNGC	2 cut(s)	177, 375
Sau3AI	GATC	1 cut(s)	129
Sau96I	GGNCC	2 cut(s)	184, 405
SetI	ASST	3 cut(s)	206, 302, 379
SfaNI	GCATC	2 cut(s)	108, 336
SfcI	CTRYAG	1 cut(s)	360
SinI	GGWCC	2 cut(s)	184, 405
SmiMI	CAYNNNNRTG	1 cut(s)	149
SphI	GCATGC	1 cut(s)	327
TaaI	ACNGT	4 cut(s)	48, 151, 338, 361
TaiI	ACGT	1 cut(s)	302
TatI	WGTACW	1 cut(s)	48
TfiI	GAWTC	1 cut(s)	288
TscAI	CASTG	2 cut(s)	34, 70
TseFI	GTSAC	2 cut(s)	74, 392
TseI	GCWGC	2 cut(s)	176, 374
Tsp45I	GTSAC	2 cut(s)	74, 392
TspDTI	ATGAA	2 cut(s)	133, 280
TspGWI	ACGGA	2 cut(s)	359, 380
TspRI	CASTG	2 cut(s)	34, 70
Van91I	CCANNNNNTGG	1 cut(s)	69
VpaK11BI	GGWCC	2 cut(s)	184, 405
XceI	RCATGY	1 cut(s)	327
XmiI	GTMKAC	1 cut(s)	224
Zsp2I	ATGCAT	1 cut(s)	329

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.