Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr7

Orthogroup ID

OG0028906

Physical Location & Seq

Genomic Coordinates Reverse (-)

85450 .. 85960

Gene Structure 511 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 303 bp

ATGAATGATTTGGTACGGTTAGAGAGGGAAAGGAACATAAGGCCGGATCCAGAAATTGATGCATTTATGAAGAGTTTGCAATTGGGGTGTGTATACGCGTGTTCTTTATGCTGTCCTGAAACATGTGATCATGTTTACCTTTTTGATAATGACCATGATGATGCAAAAGATATCTACAGGAAATCCATGCGTTGCAGATTCCCATATCGATCAGAGAGGTCGACTTATCTTGGAGGTAATGCTAATCTCTCTAATTCCACTAACCACCAGTCTCATCTCTCTAATTCCAGCATGTTTTTATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0003824 GO:0005488 GO:0006325 GO:0006338 GO:0006342 GO:0006355 GO:0006464 GO:0006479 GO:0006807 GO:0006996 GO:0008150 GO:0008152 GO:0008168 GO:0008170 GO:0008213 GO:0008276 GO:0008757 GO:0009889 GO:0009890 GO:0009892 GO:0009987 GO:0010468 GO:0010556 GO:0010558 GO:0010605 GO:0010629 GO:0016043 GO:0016278 GO:0016279 GO:0016458 GO:0016569 GO:0016570 GO:0016571 GO:0016740 GO:0016741 GO:0018022 GO:0018024 GO:0018193 GO:0018205 GO:0019219 GO:0019222 GO:0019538 GO:0031056 GO:0031060 GO:0031323 GO:0031324 GO:0031326 GO:0031327 GO:0031399 GO:0032259 GO:0032268 GO:0033043 GO:0033044 GO:0034968 GO:0036211 GO:0040029 GO:0042054 GO:0043170 GO:0043412 GO:0043414 GO:0043565 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0045814 GO:0045892 GO:0045934 GO:0048519 GO:0048523 GO:0050789 GO:0050794 GO:0051128 GO:0051171 GO:0051172 GO:0051246 GO:0051252 GO:0051253 GO:0051276 GO:0051570 GO:0060255 GO:0065007 GO:0071704 GO:0071840 GO:0080090 GO:0097159 GO:0140096 GO:0140110 GO:1900109 GO:1901363 GO:1901564 GO:1902275 GO:1902679 GO:1903506 GO:1903507 GO:2000112 GO:2000113 GO:2001141

KEGG Pathways

Metabolic & Signaling

ko00310 ko04211 map00310 map04211

Pfam Domains

Protein Families

Pre-SET SET zf-TRM13_CCCH

Protein Analysis

101

Amino Acids

11.63

Weight (kDa)

6.03

Isoelectric Point (pI)

48.65

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0028906)

Species	Orthologous Gene IDs
malus_domestica	MD11G1104100.v1.1
pyrus_communis	pycom07g00070

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	2 cut(s)	93, 221
AccII	CGCG	1 cut(s)	98
AclWI	GGATC	2 cut(s)	41, 54
AfaI	GTAC	1 cut(s)	15
AflIII	ACRYGT	2 cut(s)	96, 122
Alw26I	GTCTC	1 cut(s)	276
AlwI	GGATC	2 cut(s)	41, 54
AoxI	GGCC	1 cut(s)	41
BamHI	GGATCC	1 cut(s)	46
BclI	TGATCA	1 cut(s)	127
BcoDI	GTCTC	1 cut(s)	276
BfmI	CTRYAG	1 cut(s)	175
BmiI	GGNNCC	1 cut(s)	48
BmsI	GCATC	2 cut(s)	49, 151
Bsa29I	ATCGAT	1 cut(s)	208
Bse1I	ACTGG	1 cut(s)	268
BseCI	ATCGAT	1 cut(s)	208
BseNI	ACTGG	1 cut(s)	268
Bsh1236I	CGCG	1 cut(s)	98
BshFI	GGCC	1 cut(s)	43
BshVI	ATCGAT	1 cut(s)	208
BsiSI	CCGG	1 cut(s)	44
BsmAI	GTCTC	1 cut(s)	276
BsnI	GGCC	1 cut(s)	43
Bsp143I	GATC	3 cut(s)	46, 127, 209
BspANI	GGCC	1 cut(s)	43
BspDI	ATCGAT	1 cut(s)	208
BspFNI	CGCG	1 cut(s)	98
BspLI	GGNNCC	1 cut(s)	48
BspPI	GGATC	2 cut(s)	41, 54
BsrI	ACTGG	1 cut(s)	268
BssMI	GATC	3 cut(s)	46, 127, 209
BssNAI	GTATAC	1 cut(s)	94
Bst1107I	GTATAC	1 cut(s)	94
Bst4CI	ACNGT	1 cut(s)	18
Bst6I	CTCTTC	1 cut(s)	65
BstFNI	CGCG	1 cut(s)	98
BstKTI	GATC	3 cut(s)	49, 130, 212
BstMAI	GTCTC	1 cut(s)	276
BstMBI	GATC	3 cut(s)	46, 127, 209
BstNSI	RCATGY	2 cut(s)	126, 295
BstSFI	CTRYAG	1 cut(s)	175
BstUI	CGCG	1 cut(s)	98
BstX2I	RGATCY	1 cut(s)	46
BstYI	RGATCY	1 cut(s)	46
BstZ17I	GTATAC	1 cut(s)	94
Bsu15I	ATCGAT	1 cut(s)	208
BsuRI	GGCC	1 cut(s)	43
BsuTUI	ATCGAT	1 cut(s)	208
ClaI	ATCGAT	1 cut(s)	208
Csp6I	GTAC	1 cut(s)	14
CviAII	CATG	5 cut(s)	123, 131, 155, 187, 292
CviJI	RGCY	1 cut(s)	43
CviKI_1	RGCY	1 cut(s)	43
CviQI	GTAC	1 cut(s)	14
DpnI	GATC	3 cut(s)	48, 129, 211
DpnII	GATC	3 cut(s)	46, 127, 209
Eam1104I	CTCTTC	1 cut(s)	65
EarI	CTCTTC	1 cut(s)	65
Eco32I	GATATC	1 cut(s)	172
EcoRV	GATATC	1 cut(s)	172
EcoT22I	ATGCAT	1 cut(s)	64
FaeI	CATG	5 cut(s)	126, 134, 158, 190, 295
FatI	CATG	5 cut(s)	122, 130, 154, 186, 291
FbaI	TGATCA	1 cut(s)	127
FblI	GTMKAC	2 cut(s)	93, 221
HaeIII	GGCC	1 cut(s)	43
HapII	CCGG	1 cut(s)	44
Hin1II	CATG	5 cut(s)	126, 134, 158, 190, 295
HincII	GTYRAC	1 cut(s)	222
HindII	GTYRAC	1 cut(s)	222
HinfI	GANTC	1 cut(s)	198
HpaII	CCGG	1 cut(s)	44
Hpy166II	GTNNAC	3 cut(s)	94, 136, 222
Hpy188I	TCNGA	1 cut(s)	214
Hpy188III	TCNNGA	2 cut(s)	50, 116
Hpy8I	GTNNAC	3 cut(s)	94, 136, 222
HpyCH4III	ACNGT	1 cut(s)	18
HpyCH4V	TGCA	4 cut(s)	62, 79, 164, 195
Hsp92II	CATG	5 cut(s)	126, 134, 158, 190, 295
Ksp22I	TGATCA	1 cut(s)	127
Kzo9I	GATC	3 cut(s)	46, 127, 209
LpnPI	CCDG	5 cut(s)	57, 63, 129, 163, 281
LweI	GCATC	2 cut(s)	49, 151
MalI	GATC	3 cut(s)	48, 129, 211
MboI	GATC	3 cut(s)	46, 127, 209
MboII	GAAGA	1 cut(s)	82
MfeI	CAATTG	1 cut(s)	80
MflI	RGATCY	1 cut(s)	46
MluCI	AATT	4 cut(s)	54, 80, 253, 283
MluI	ACGCGT	1 cut(s)	96
MnlI	CCTC	3 cut(s)	18, 210, 227
Mph1103I	ATGCAT	1 cut(s)	64
MslI	CAYNNNNRTG	1 cut(s)	159
MspI	CCGG	1 cut(s)	44
MunI	CAATTG	1 cut(s)	80
MvnI	CGCG	1 cut(s)	98
NdeII	GATC	3 cut(s)	46, 127, 209
NlaIII	CATG	5 cut(s)	126, 134, 158, 190, 295
NlaIV	GGNNCC	1 cut(s)	48
NsiI	ATGCAT	1 cut(s)	64
NspI	RCATGY	2 cut(s)	126, 295
PciI	ACATGT	1 cut(s)	122
PfeI	GAWTC	1 cut(s)	198
PscI	ACATGT	1 cut(s)	122
PspN4I	GGNNCC	1 cut(s)	48
PsuI	RGATCY	1 cut(s)	46
RsaI	GTAC	1 cut(s)	15
RsaNI	GTAC	1 cut(s)	14
RseI	CAYNNNNRTG	1 cut(s)	159
SalI	GTCGAC	1 cut(s)	220
Sau3AI	GATC	3 cut(s)	46, 127, 209
SetI	ASST	3 cut(s)	141, 221, 238
SfaNI	GCATC	2 cut(s)	49, 151
SfcI	CTRYAG	1 cut(s)	175
SmiMI	CAYNNNNRTG	1 cut(s)	159
Sse9I	AATT	4 cut(s)	54, 80, 253, 283
TaaI	ACNGT	1 cut(s)	18
TaqI	TCGA	2 cut(s)	208, 221
TasI	AATT	4 cut(s)	54, 80, 253, 283
TfiI	GAWTC	1 cut(s)	198
TspDTI	ATGAA	2 cut(s)	17, 83
XceI	RCATGY	2 cut(s)	126, 295
XmiI	GTMKAC	2 cut(s)	93, 221
Zsp2I	ATGCAT	1 cut(s)	64

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.